Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_01g0040560 OGI:01110440 | 10/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr01:37433729-37438568
Gene Symbol C10501
DNA seq

atggcgagccgagctctcactcccatgcagctcattggcacggtcttcgtggcgctcctcgcgacgtgccacgccggcggcatcgccgtgtactggggccagaacgacggcgaggcatcgctggccgagacgtgcgcgtcgggcaactacgagttcgtcatcatcgccttcctccccaagttcggcaagggccagacgccgcgggtggacctcgccagccactgcgatcccgcgtcgggcggctgcaccggccagagcaaggacatccgcgcgtgccagcgccgcggggtgaaggtcctgctctccatcggcggcggcgacggcagctacggcctctcatcccccggtgacgcccggcaggtggccatgtacctctggaacaacttcctcggcggctcctcctcgtcccgtcccctcggcgacgccgtcctcgacggcatcgacttcgacatcgagctcggcggcgccaagttctgggacgacctcgccaggtacgtaaccaaaaccaaaccatctccggccatcttcctactcaccggccggccatcgtcacactcatcgtgatgaacagggatctgaagagcctggggaggagcggcgggaggagggtggtgctgagcgcggcgccgcagtgcccgttcccggacgagtgggacggcggcgcgatcagcacggggctgttcgacgccgtgtgggtgcagttctacaacaacccggagtgccagttcagcgcggggcggggcgcgttcatggacgcgtggaggaagtgggagtcggtgccggcggggcgactcttcctgggcctcccggcgtccaaggacgccgccggcaccgggttcgtgcccgccggcgagctcaactcccgcgtgctgccgctcatcaggggctcccccaagtacggcggcgtcatgctgtggtccaagtactacgacgatcaaaccggctacagctccgccatcaagagccacgtgtgatcacaattcacgtgttctataccattatacgttccagagcgcgtgtgcaccttacgtaatgtacgcatcactagctagagtgtgtgactgtgctgcgacgtatttataatacttcctccgttccataatgtacattatgttattctagcattttctatatccatataatatagatgtggaaaatgatagaatgacttacattatgaaacggatatttgagtatatatgtagcacagtgatgtgtaggagcatgtgttgattgctttcggttaccggtcagacgtttagaccgtagcttaccattgcccccagtttaatttcattcgttcgccactgtcgtttatatgaagaataaaaaaaggtgaccatttgttgcagcttaaattgatgttttttttgagagagagattagttgatgttttgagagaacataaatatgcgagcatttcctgcttgaaaataatattcatttctatatgaaaacaggacaataagatatctaagctcttcgaggttgttgattacatctaaatgtctttatttttaattaagtgcttttggaatgcaagaattttcaaaacacgtggaccagaaaaaaaaaatgtaattccagtaccttggatcctcgagttccatcggttgccctaataaaccgaagccaaagctaaaattcaaatttttaaacttaaatttgattttgattttaagatatttttaacgtaagtttttagcattggcttttaatttgttaggaacacatatataaaagttttacttataaactaatttttattccctaataaatcaaaatagcttactagaaatatgagcaactaatgactcccctcaaatcttataaataaaaatataaaaaaatagaaagactgtttggatggagcacatgaaaaacatatgaatcaaaatgaagattttttttttcaggaggttgatcctcatattagaagtctttcgaaaattcttatgatttgagacaatcctagggaactttgaaagaaatttggggtgactattcctttgctcaaaaatttgtaaaaattgtatgttccaaacgagattttaaagttccaaacgagccctaaatcccttcgcccaatcaacaaatcttatattctgtttgtacaatagaagtagaacgtatcaccgaacctccgctggactgtacaattagccaactgagctgttcagtcgttagtgttgtcatcctttgttgcttatcattatactgcaatattccattgatagaagaactaagagcattatgctttcaaatagaagaactaacagcaaggattttgctgaatatttttttctacaCaaaactgatgcctacgaatctacgatgagatatatactgctattttgagacttccagagtcaaacttttaggctacctgaactgaattccgtctgttacttgaagctctgggaggccattacttccgatctctaaatagtcaagttatttctattttctttgatgaaaaatagctcccccgctttccccaatgagcttgtggcaggtgaaatttgtaaggtgttcacttgagtttatctttatacttgtagcactgcatatatatctcaaattattgattatcagtgcatatgttcagaaacttcggattgtggtagtgactctgctctgcaacgacaatctgctttctgctgaaaacgataagcacgaacttggcaggccaaaaatactatccaaaactaccaatcagctggtcgtcacgtgaatccacattacccggttcatttgattgcatgaatcaaaatgtttctttgtctagttggatagagtacgaagaacgaaagcagcaaacgagcccgcactattcgttcggatgattgtctattcctctgtccaggagagaacagagtattaattagctcaataggcccatgcgttaaagttgttaatcgtcggattagctcaaatatgtggtcttttccggtagtgcgtgagtagcaagattgcatgacggttgtttgatcgtcaaacagttttgagcttgtccatttcactggctgaactcgctgcaaaatgtccctttctttctctgtcatgctaaatgccattttattaaaaaaattttttgccatactgctgattagttacagagcaatcctaacattacacttcttaatcttgcatctaattttctttagacatcaaaaaaggataatagcatccagtgattccggaaagaatcctttcatccttttgtactgtctacctactggccactctgcaactgccattgttgaacactgcaaacacaatggcatgatggcatcaaccagtcaactcttacggagtgaagcagtttgacagtcacaagaataattggccatcgcatctcgtgattggtactggcgcgtgataagtggaagctgcgctcaaaccgaagaccaaagctcgcggacgtcaacggtcaaccactgccgacactataggccacaatcttgtgcatagcatgcgctgattggccaatatcatattggcaatggcatgcttcgatgattggtcccaagcacccaccacacattttcttcttatcttgttgctcacttgttctgttcttgcccggtcaacttgcgacggcgagcagacctaacaaatgatgaaatcgcggaacgcacgtcgcagcggcttcactggctcactgctaccagtattcacacctagttgaattcggctataaatacacaagaaccttgcggttgcggagtagaagcaagaattcgatcgagaatcaccatgatgacaagtagaatgttttcggcaatgcagatgctgatcatggtggtggtggcattggccgggctagctgccggagcgcgcgccggcgacatcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgaccggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgccggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgccgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgtcggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaacaactacctcggcggcacgtcgccgtcaaggccgctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtactgggacgacttggccaggtacctcaaggcgtactcgcggcaggggagcagcaagaagccggtgtacctgacggcggcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttcgactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggcgtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttcctcggcctgccggcggcggcggaggccgccggcagcgggttcgtggagacgagcgacctggtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtggtcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttgagctagccagggtaagctcgtgtcaggtcggcgttcgcgtagaatcacacgtgccgcgcgttccctgcaagatggagtagtttctacacatttcagaacaaagcaaacatgtacaataagatggccggcttgtatactcatttagaagcagaaaaaattgtgag

More
CDS seq

atggcgagccgagctctcactcccatgcagctcattggcacggtcttcgtggcgctcctcgcgacgtgccacgccggcggcatcgccgtgtactggggccagaacgacggcgaggcatcgctggccgagacgtgcgcgtcgggcaactacgagttcgtcatcatcgccttcctccccaagttcggcaagggccagacgccgcgggtggacctcgccagccactgcgatcccgcgtcgggcggctgcaccggccagagcaaggacatccgcgcgtgccagcgccgcggggtgaaggtcctgctctccatcggcggcggcgacggcagctacggcctctcatcccccggtgacgcccggcaggtggccatgtacctctggaacaacttcctcggcggctcctcctcgtcccgtcccctcggcgacgccgtcctcgacggcatcgacttcgacatcgagctcggcggcgccaagttctgggacgacctcgccagggatctgaagagcctggggaggagcggcgggaggagggtggtgctgagcgcggcgccgcagtgcccgttcccggacgagtgggacggcggcgcgatcagcacggggctgttcgacgccgtgtgggtgcagttctacaacaacccggagtgccagttcagcgcggggcggggcgcgttcatggacgcgtggaggaagtgggagtcggtgccggcggggcgactcttcctgggcctcccggcgtccaaggacgccgccggcaccgggttcgtgcccgccggcgagctcaactcccgcgtgctgccgctcatcaggggctcccccaagtacggcggcgtcatgctgtggtccaagtactacgacgatcaaaccggctacagctccgccatcaagagccacatgctgatcatggtggtggtggcattggccgggctagctgccggagcgcgcgccggcgacatcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgaccggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgccggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgccgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgtcggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaacaactacctcggcggcacgtcgccgtcaaggccgctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtactgggacgacttggccaggtacctcaaggcgtactcgcggcaggggagcagcaagaagccggtgtacctgacggcggcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttcgactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggcgtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttcctcggcctgccggcggcggcggaggccgccggcagcgggttcgtggagacgagcgacctggtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtggtcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttga

More
Protein seq

MASRALTPMQLIGTVFVALLATCHAGGIAVYWGQNDGEASLAETCASGNYEFVIIAFLPKFGKGQTPRVDLASHCDPASGGCTGQSKDIRACQRRGVKVLLSIGGGDGSYGLSSPGDARQVAMYLWNNFLGGSSSSRPLGDAVLDGIDFDIELGGAKFWDDLARDLKSLGRSGGRRVVLSAAPQCPFPDEWDGGAISTGLFDAVWVQFYNNPECQFSAGRGAFMDAWRKWESVPAGRLFLGLPASKDAAGTGFVPAGELNSRVLPLIRGSPKYGGVMLWSKYYDDQTGYSSAIKSHMLIMVVVALAGLAAGARAGDIAIYWGQNGNEGTLAQTCATGNYRFVIVAFLPVFGKGQTPVLNLAGHCDPASNGCTGVGADIKSCQSLGIKVMFSIGGGVGNYGLSSRDDAKQVAAYLWNNYLGGTSPSRPLGDAVMDGIDFDIESGGGMYWDDLARYLKAYSRQGSSKKPVYLTAAPQCPFPDASLGVALSTGLFDYVWVQFYNNPPCQYSSSNGVGNLASAWKQWTSIPAGRVFLGLPAAAEAAGSGFVETSDLVSKVLPVVKKSPKYGGIMLWSRYYDGLTGYSDKVKSSV

Function Acidic endochitinase [UniProtKB/Swiss-Prot:P29060]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_01g0040560 OsKeNa_01g0040560.01 Chr01 37433729 37438405 + NAM
CDS seq

atggcgagccgagctctcactcccatgcagctcattggcacggtcttcgtggcgctcctcgcgacgtgccacgccggcggcatcgccgtgtactggggccagaacgacggcgaggcatcgctggccgagacgtgcgcgtcgggcaactacgagttcgtcatcatcgccttcctccccaagttcggcaagggccagacgccgcgggtggacctcgccagccactgcgatcccgcgtcgggcggctgcaccggccagagcaaggacatccgcgcgtgccagcgccgcggggtgaaggtcctgctctccatcggcggcggcgacggcagctacggcctctcatcccccggtgacgcccggcaggtggccatgtacctctggaacaacttcctcggcggctcctcctcgtcccgtcccctcggcgacgccgtcctcgacggcatcgacttcgacatcgagctcggcggcgccaagttctgggacgacctcgccagggatctgaagagcctggggaggagcggcgggaggagggtggtgctgagcgcggcgccgcagtgcccgttcccggacgagtgggacggcggcgcgatcagcacggggctgttcgacgccgtgtgggtgcagttctacaacaacccggagtgccagttcagcgcggggcggggcgcgttcatggacgcgtggaggaagtgggagtcggtgccggcggggcgactcttcctgggcctcccggcgtccaaggacgccgccggcaccgggttcgtgcccgccggcgagctcaactcccgcgtgctgccgctcatcaggggctcccccaagtacggcggcgtcatgctgtggtccaagtactacgacgatcaaaccggctacagctccgccatcaagagccacatgctgatcatggtggtggtggcattggccgggctagctgccggagcgcgcgccggcgacatcgcgatctactggggccagaacggcaacgagggcacgctggcgcagacgtgcgcgaccggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgccggtgctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgccgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgtcggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaacaactacctcggcggcacgtcgccgtcaaggccgctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtactgggacgacttggccaggtacctcaaggcgtactcgcggcaggggagcagcaagaagccggtgtacctgacggcggcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttcgactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggcgtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcgggacgggtgttcctcggcctgccggcggcggcggaggccgccggcagcgggttcgtggagacgagcgacctggtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtggtcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttga

More
Protein seq

MASRALTPMQLIGTVFVALLATCHAGGIAVYWGQNDGEASLAETCASGNYEFVIIAFLPKFGKGQTPRVDLASHCDPASGGCTGQSKDIRACQRRGVKVLLSIGGGDGSYGLSSPGDARQVAMYLWNNFLGGSSSSRPLGDAVLDGIDFDIELGGAKFWDDLARDLKSLGRSGGRRVVLSAAPQCPFPDEWDGGAISTGLFDAVWVQFYNNPECQFSAGRGAFMDAWRKWESVPAGRLFLGLPASKDAAGTGFVPAGELNSRVLPLIRGSPKYGGVMLWSKYYDDQTGYSSAIKSHMLIMVVVALAGLAAGARAGDIAIYWGQNGNEGTLAQTCATGNYRFVIVAFLPVFGKGQTPVLNLAGHCDPASNGCTGVGADIKSCQSLGIKVMFSIGGGVGNYGLSSRDDAKQVAAYLWNNYLGGTSPSRPLGDAVMDGIDFDIESGGGMYWDDLARYLKAYSRQGSSKKPVYLTAAPQCPFPDASLGVALSTGLFDYVWVQFYNNPPCQYSSSNGVGNLASAWKQWTSIPAGRVFLGLPAAAEAAGSGFVETSDLVSKVLPVVKKSPKYGGIMLWSRYYDGLTGYSDKVKSSV

More
Gene Transcript Chromosome Start End Strand Source
OsKeNa_01g0040560 OsKeNa_01g0040560.02 Chr01 37437460 37438568 + IsoSeq
CDS seq

agaagcaagaattcgatcgagaatcaccatgatgac

Protein seq

RSKNSIENHHDD

No AS event found.

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 7.754455 1.146925

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0860400 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g64100 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os01g0860500 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0041020 RBH 0.102028 32.596107 1.911678
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_07g0010770 RBH 0.143697 0.0 0.215067
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0040920 RBH 0.0 0.0 0.416964
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0040390 RBH 0.250236 1.940165 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0039960 RBH 0.0 18.283033 3.157826
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0612000 RBH 1.660333 21.7410335 2.7585565
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0039640 RBH 0.0 1.419371 0.231027
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0611600 RBH 5.0654455 8.495277 0.4058205
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0039990 RBH 0.074233 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0039940 RBH 0.082623 12.084152 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0040180 RBH 2.828008 15.160257 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0040140 RBH 0.161689 1.782064 0.403877
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0040020 RBH 0.104023 15.131411 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G040470 RBH 0.076032 1.570040 0.311115
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0040150 RBH 0.423680 37.038948 0.681147
Powered by

© 2021-2025 Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.