Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0039990 | OGI:01110460 | 10/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:38736947-38741763 | ||||||||
| Gene Symbol | C10501 | ||||||||||
| DNA seq | atggcgagccgagctctcactcccatgcagctcattggcacggtcttcgtggcgctcctcgcgacgtgccacgccggcggcatcgccgtgtactggggccagaacgacggcgaggcatcgctggccgagacgtgcgcgtcgggcaactacgagttcgtcatcatcgccttcctccccaagttcggcaagggccagacgccgcgggtggacctcgccagccactgcgaccccgcgtcgggcggctgcaccggccagagcaaggacatccgcgcgtgccagcgccgcggggtgaaggtcctgctctccatcggcggcggcgacggcagctacggcctcgcatcccccggtgacgcccggcaggtggccatgtacctctggaacaacttcctcggcggctcctcctcgtcccgtcccctcggcgacgccgtcctcgacggcatcgacttcgacatcgagctcggcggcgccaagttctgggacgacctcgccaggtacgtaaccaaaaccaaaccatctccggccatcttcctactcaccggccggccatcgtcacactcatcgtgatgaacagggatctgaagagcctggggaggagcggcgggaggagggtggtgctgagcgcggcgccgcagtgcccgttcccggacgagtgggacggcggcgcgatcagcacggggctgttcgacgccgtgtgggtgcagttctacaacaacccggagtgccagttcagcgcggggcggggcgcgttcatggacgcgtggaggaagtgggagtcggtgccggcggggcgactcttcctgggcctcccggcgtccaaggacgccgccggcaccgggttcgtgcccgccggcgagctcaactcccgcgtgctgccgctcatcaggggctcccccaagtacggcggcgtcatgctgtggtccaagtactacgacgatcaaaccggctacagctccgccatcaagagccacgtgtgatcacaattcacgtgttctataccattatacgttccagagcgcgtgtgcaccttacgtaacgtacgcatcactagctagagtgtgtgactgtgctgcgacgtatttgtaatacttactccgtttcataatgtaaattatgttattctagcattttctatatccatataatatagatgtggaaaatgctaaaatgacttacattatgaaacggatatttgagtatatatgtagcacagtgatgtgtaggagcatgtgttgactgctttcggttaccggtcagacgtttagaccgtagcttaccattgcccccagtttaatttcattcgttcgccactgtcgtttatatgaagaatAAaaaaaggtgaccatttgttgcagcttaaattgatgttttttgagagagagattagttgatgttttgagagaacataaatatgcgagcatttcctgcttgaaaataatattcatttctatatgaaaacaggacaataagatatctaagctcttcgaggttgttgattacatctaaatgtctttatttttaattaagtgcttttggaatgcagaattttcaaaacacgtggaccagAaaaaaaaatgtaattccagtaccttggatcctcgagttccatcggttgccctaataaaccgatgccaaagctaaaattcaaatttttaaacttaaatttgattttgattttaagatatttttaacgtaactttttagcattggcttttaatttgttaggaacacatatataaaagttttacttataaactaatttttattccctaataaatcaaaatagcttactagaaatatgagcaactaatgactCccctcaaatcttataaataaaaatataaaaaaatagaaagactgtttggatggagcacatgaaaaacatatgaatcaaaatgaagatttttttttcaggaggttgatcctcatattagaagtctttcgaaaattcttatgatttgagacaatcctagggaactttgaaagaaatttggggtgactattcctttgctcaaaaatttgtaaaaattgtatgttccaaacgagattttaaagttccaaacgagccctaaatcccttcgcccaatcaacaaatcttatattctgtttgtacaatagaagtagaacgtatcaccgaacctccgctggactgtacaatcagccaactgagctgttcagtcgttagtgttgtcatcctttgttgcttatcattatactgcaatattccattgatagaagaactaagagcattatgctttcaaatagaagaactaacagcaaggattttgctgaatatttttttctacacaaaactgatgcctacgatatatactgctattttgagacttccagagtcaaacttttaggctacctgaactgaattccgtctgttacttgaagctctgggaggccattatttccgatctctaaatagtcaagttatttctattttctttgatgaaaaatagctcccccgctttccccaatgagcttgtggcaggtgaaatttgtaaggtgttcacttgagtttatctttatacttgtagcactgcatatatatctcaaattattgattatcagtgcatatgttcagaaacttcggattgtggtagtgactctgctctgcaacgacaatctgctttctgctgaaaacgataagcacgaacttggcaggccaaaaatactatccaaaactaccaatcagctggtcgtcacgtgaatccacattacccggttcatttgattgcatgaatcaaaatgtttttgtctagttggatagagtacgaagaacgaaagcagcaaacgagcccgcactattcgttcggatgattttctattcctctgtccaggagagaacagagtattaattagctcaataggcccatgcgttaaagttgttaatcgtcggattagctcaaatatgtggtcttttccggtagtgcgtgagtagcaagattgcatgacggttgtttgatcgtcaaacagttttgagcttgtccatttcactggctgaactcgctgcaaaatgtccctttctttctctgttcatgctaaatgccattttattaaaaaaatttttgccatactgctgattagttacagagcaatcctaacattacacttcttaatcttgcatctaattttctttagacatcaaaaaaggataatagcatccagtgattccggaaagaatcctttcatccttttgtactgtctacctactggccactctgcaactgccattgttgaacactgcaaacacaatggcatgatggcatcaaccagtcaactcttacggagtgaagcagtttgacaatcacaagaataattggccatcgcatctcgtgattggtactggcgcgtgataagtggaagctgcgctcaaaccgaagaccaaagctcgcggacgtcaacggtcaaccactgccgacactataggccacaatcttgtgcagctgattggccaatatcatattggcaatggcatgcttcgatgattggtcccaagcacccaccacgcattttcttcttatcttgttgctcacttgttctgttcttgcccggtcaacttgcgacggcgagcagacctaacaaatgatgaaatcgcggaacgcacgtcgcagcggcttcactggctcactgctaccagtattcacacctagttgaattcggctataaatacacaagaaccttgcggttgcggagtagaagcaagaattcgatcgagaatcaccatgatgacaagtagaatgttttcggcaatgcagatgctgatcatggtggtggtggcattggccgggctagccgccggagcgcgcgccggcgacatcgcgatctactggggccagaacggcaacgagggaacgctggcgcagacgtgcgcgaccggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgccggttctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgccgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgtcggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaacaactacctcggcggcacgtcgccgtcgaggccgctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtactgggacgacttggccaggtacctcaaggcgtactcgcggcaggggagcagcaagaagccggtgtacctgacggcggcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttcgactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggcgtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcggggcgggtgttcctcggcctgccggcggcagcggcggccgccggcagcgggttcgtggagacgagcgacctggtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtggtcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttgagctagccagggtaagctcgtgtcaggtcggcgttcgcgtagaatcacacgtgccgcgcgttccctgcaagatggagtagtttctacacatttcagaacaaagcaaacatgtacaatcagatggccggcttgtatactcatttagaagcagaaaaaattgtgagaaatt
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| CDS seq | atggcgagccgagctctcactcccatgcagctcattggcacggtcttcgtggcgctcctcgcgacgtgccacgccggcggcatcgccgtgtactggggccagaacgacggcgaggcatcgctggccgagacgtgcgcgtcgggcaactacgagttcgtcatcatcgccttcctccccaagttcggcaagggccagacgccgcgggtggacctcgccagccactgcgaccccgcgtcgggcggctgcaccggccagagcaaggacatccgcgcgtgccagcgccgcggggtgaaggtcctgctctccatcggcggcggcgacggcagctacggcctcgcatcccccggtgacgcccggcaggtggccatgtacctctggaacaacttcctcggcggctcctcctcgtcccgtcccctcggcgacgccgtcctcgacggcatcgacttcgacatcgagctcggcggcgccaagttctgggacgacctcgccagggatctgaagagcctggggaggagcggcgggaggagggtggtgctgagcgcggcgccgcagtgcccgttcccggacgagtgggacggcggcgcgatcagcacggggctgttcgacgccgtgtgggtgcagttctacaacaacccggagtgccagttcagcgcggggcggggcgcgttcatggacgcgtggaggaagtgggagtcggtgccggcggggcgactcttcctgggcctcccggcgtccaaggacgccgccggcaccgggttcgtgcccgccggcgagctcaactcccgcgtgctgccgctcatcaggggctcccccaagtacggcggcgtcatgctgtggtccaagtactacgacgatcaaaccggctacagctccgccatcaagagccacatgctgatcatggtggtggtggcattggccgggctagccgccggagcgcgcgccggcgacatcgcgatctactggggccagaacggcaacgagggaacgctggcgcagacgtgcgcgaccggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgccggttctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgccgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgtcggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaacaactacctcggcggcacgtcgccgtcgaggccgctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtactgggacgacttggccaggtacctcaaggcgtactcgcggcaggggagcagcaagaagccggtgtacctgacggcggcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttcgactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggcgtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcggggcgggtgttcctcggcctgccggcggcagcggcggccgccggcagcgggttcgtggagacgagcgacctggtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtggtcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttga
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| Protein seq | MASRALTPMQLIGTVFVALLATCHAGGIAVYWGQNDGEASLAETCASGNYEFVIIAFLPKFGKGQTPRVDLASHCDPASGGCTGQSKDIRACQRRGVKVLLSIGGGDGSYGLASPGDARQVAMYLWNNFLGGSSSSRPLGDAVLDGIDFDIELGGAKFWDDLARDLKSLGRSGGRRVVLSAAPQCPFPDEWDGGAISTGLFDAVWVQFYNNPECQFSAGRGAFMDAWRKWESVPAGRLFLGLPASKDAAGTGFVPAGELNSRVLPLIRGSPKYGGVMLWSKYYDDQTGYSSAIKSHMLIMVVVALAGLAAGARAGDIAIYWGQNGNEGTLAQTCATGNYRFVIVAFLPVFGKGQTPVLNLAGHCDPASNGCTGVGADIKSCQSLGIKVMFSIGGGVGNYGLSSRDDAKQVAAYLWNNYLGGTSPSRPLGDAVMDGIDFDIESGGGMYWDDLARYLKAYSRQGSSKKPVYLTAAPQCPFPDASLGVALSTGLFDYVWVQFYNNPPCQYSSSNGVGNLASAWKQWTSIPAGRVFLGLPAAAAAAGSGFVETSDLVSKVLPVVKKSPKYGGIMLWSRYYDGLTGYSDKVKSSV |
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| Function | Acidic endochitinase [UniProtKB/Swiss-Prot:P29060] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0039990 | OsLima_01g0039990.01 | Chr01 | 38736947 | 38741595 | + | NAM | ||
| CDS seq | atggcgagccgagctctcactcccatgcagctcattggcacggtcttcgtggcgctcctcgcgacgtgccacgccggcggcatcgccgtgtactggggccagaacgacggcgaggcatcgctggccgagacgtgcgcgtcgggcaactacgagttcgtcatcatcgccttcctccccaagttcggcaagggccagacgccgcgggtggacctcgccagccactgcgaccccgcgtcgggcggctgcaccggccagagcaaggacatccgcgcgtgccagcgccgcggggtgaaggtcctgctctccatcggcggcggcgacggcagctacggcctcgcatcccccggtgacgcccggcaggtggccatgtacctctggaacaacttcctcggcggctcctcctcgtcccgtcccctcggcgacgccgtcctcgacggcatcgacttcgacatcgagctcggcggcgccaagttctgggacgacctcgccagggatctgaagagcctggggaggagcggcgggaggagggtggtgctgagcgcggcgccgcagtgcccgttcccggacgagtgggacggcggcgcgatcagcacggggctgttcgacgccgtgtgggtgcagttctacaacaacccggagtgccagttcagcgcggggcggggcgcgttcatggacgcgtggaggaagtgggagtcggtgccggcggggcgactcttcctgggcctcccggcgtccaaggacgccgccggcaccgggttcgtgcccgccggcgagctcaactcccgcgtgctgccgctcatcaggggctcccccaagtacggcggcgtcatgctgtggtccaagtactacgacgatcaaaccggctacagctccgccatcaagagccacatgctgatcatggtggtggtggcattggccgggctagccgccggagcgcgcgccggcgacatcgcgatctactggggccagaacggcaacgagggaacgctggcgcagacgtgcgcgaccggtaattacaggttcgtcatcgtggccttcctgcctgtgttcggcaagggccagacgccggttctgaacctggccggccactgcgacccggcgtcgaacggctgcaccggcgtgggcgccgacatcaagtcgtgccagagcctcggcatcaaggtcatgttctcgatcggcggcggcgtcggcaactacggcctgtcctcccgcgacgacgccaagcaggtcgcggcgtacctgtggaacaactacctcggcggcacgtcgccgtcgaggccgctcggcgacgccgtcatggacggcatcgacttcgacatcgagagcggcgggggcatgtactgggacgacttggccaggtacctcaaggcgtactcgcggcaggggagcagcaagaagccggtgtacctgacggcggcgccacagtgccccttcccggacgcgtcgctcggcgtcgcgctcagcaccggcctgttcgactacgtgtgggtgcagttctacaacaacccgccgtgccagtacagctcgtccaacggcgtgggcaacctggcgagcgcgtggaagcagtggacgtcgatcccggcggggcgggtgttcctcggcctgccggcggcagcggcggccgccggcagcgggttcgtggagacgagcgacctggtgtcgaaggtgctccccgtggtgaagaagtctcccaagtacggagggatcatgctgtggtcgcggtactatgacgggctcacggggtacagcgacaaggtgaagtccagcgtttga
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| Protein seq | MASRALTPMQLIGTVFVALLATCHAGGIAVYWGQNDGEASLAETCASGNYEFVIIAFLPKFGKGQTPRVDLASHCDPASGGCTGQSKDIRACQRRGVKVLLSIGGGDGSYGLASPGDARQVAMYLWNNFLGGSSSSRPLGDAVLDGIDFDIELGGAKFWDDLARDLKSLGRSGGRRVVLSAAPQCPFPDEWDGGAISTGLFDAVWVQFYNNPECQFSAGRGAFMDAWRKWESVPAGRLFLGLPASKDAAGTGFVPAGELNSRVLPLIRGSPKYGGVMLWSKYYDDQTGYSSAIKSHMLIMVVVALAGLAAGARAGDIAIYWGQNGNEGTLAQTCATGNYRFVIVAFLPVFGKGQTPVLNLAGHCDPASNGCTGVGADIKSCQSLGIKVMFSIGGGVGNYGLSSRDDAKQVAAYLWNNYLGGTSPSRPLGDAVMDGIDFDIESGGGMYWDDLARYLKAYSRQGSSKKPVYLTAAPQCPFPDASLGVALSTGLFDYVWVQFYNNPPCQYSSSNGVGNLASAWKQWTSIPAGRVFLGLPAAAAAAGSGFVETSDLVSKVLPVVKKSPKYGGIMLWSRYYDGLTGYSDKVKSSV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0039990 | OsLima_01g0039990.02 | Chr01 | 38740648 | 38741763 | + | IsoSeq | ||
| CDS seq | agaagcaagaattcgatcgagaatcaccatgatgac |
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| Protein seq | RSKNSIENHHDD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.074233 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0860400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g64110 | RBH | 0.437242 | 0.0 | 0.285733 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0860400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0041010 | RBH | 0.0 | 5.290593 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0040560 | RBH | 0.0 | 7.754455 | 1.146925 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0040930 | RBH | 0.0 | 35.405018 | 2.663350 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0040390 | RBH | 0.250236 | 1.940165 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0039960 | RBH | 0.0 | 18.283033 | 3.157826 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0612000 | RBH | 1.660333 | 21.7410335 | 2.7585565 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0039630 | RBH | 0.130048 | 0.512200 | 0.165652 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0611600 | RBH | 5.0654455 | 8.495277 | 0.4058205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0010640 | RBH | 0.036821 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0039940 | RBH | 0.082623 | 12.084152 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0040180 | RBH | 2.828008 | 15.160257 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0040140 | RBH | 0.161689 | 1.782064 | 0.403877 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0040020 | RBH | 0.104023 | 15.131411 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G040470 | RBH | 0.076032 | 1.570040 | 0.311115 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0040150 | RBH | 0.423680 | 37.038948 | 0.681147 |
