Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_06g0020680 OGI:06063770 | 16/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr06:23650372-23654514
Gene Symbol -
DNA seq

atgatgccttcggtttccttatgtccagggcttgtagtcttgctcctctacctctccatcatcctagcacgctcaacactcgccggcgctgacgaggatggcgagaacgacgaccagcgagccctgctctgcttcaagtcccaggtctccgacccgtccggtgctcttgcctcgtggcagagcaacacgtccctccagttctgcagctggaatggcgtctcgtgcaccgcgggtcgccgccgccgcgtcgccgcgctgagcctcccgtcgaagggcttggctggccccgtgccaccgtgcctcgccaacctgacctccctcgagacgctgcagctcgccggcaacggcttccacggcgtcgtaccgtccgagctcggcgctctgagccggctcagctacctcaacctcagcggcaactctctcgccggcgttatcccgtcggcgctgtcgtcgtgcgccaacctccgggtgctcggcctgtggaacaactccctcgaaggtgagatccccacaaccctgagccagtgcatggatctgcaagagatcaacctcagcaacaacaagctgcaagggagcatccctactgcctttgggacactacccaagctgcagatcctagtcctcgcgggcaacaggctcaccggcggcataccgcctttgctcggcagtagctcatctcttgttcatgtcgatcttgggggcaacagcctgaccggagagatgccggtgtccttggcgagtagcccatctctccaggtactaaggctcatggccaatagtttcagtggagagctcccggtctctctcttaaacacttcttcacttgttgctatttgcctccaaaaaaacaacttctctggaggcataccacctgtgacagcaatctcccggcctcctgtgaaatatcttagcataagagagaacggcctatcaggacaaatacctccttctctagggaaccttacctctcttgtttatcttatgcttcacaagaacaaattggttgggagcatcccagaaagtttaggtcagatttcaacgttagaaaggctgtccttgaatggcaaccacctatcagggcctgtgccaccatccctgttcaatatgtcatcactgacatatcttggcttggcagataactcgctcactggaaaattgccggccaatattgcccataccctcccaaacattcagacgttactagttacagcaaacagatttgatggcactattccagcttctctggctaatgcgtctaaactggataatctgcttcttgccagcaataggatatctggggacattccattattaggatcattgccaaacttgcaaatacttgatattggtgacaatatgctagaaacgggtgaatggagattccttgcttcgctgtcgaactgttccatgttagatacgctgatgattgactcgaataatcttgacgggaattttccaagatctgtcggtaacctttcagatagtctccaggtgctctggcttggagcaaacaaaatttctggaactattccgttggagataggtaatcttaagaacctcactgaattacgtatggactacaatcttttcagtgatagtataccaccaacacttgtaaatttgcacaagctggtagtgttatcgattgcgaagaacaaactttctggtcccttgccagatgctatggggaaccttcttcagcttaatgagctcagtttagacgggaacaacttcagtggaagtatacctactagtataggatactgcagacaactcgataaactgaatctttctcacaattcactatctggaagcataccaagtgagctcttcaaaatttcttcattttcacaatatttggacttgtcctacaatcaattatctggagatataccccaggaggctggcaacctaattaatcttggcacccttaatatctcaaataacaggttgtctggtaacatcccatccactcttggccagtgtgtgcttctagagtctcttcaaatagaaagcaactcccttgtaggaagcattccacagtcttttattaacttggtcggcatgaaagaactcgatgtttcacaaaataatttgtctggaaaaattccagagttcatggcgactttgagtaatttgcatgttcttaatttatccttcaacaattttgatggaccaattccaacgggtggtgcttttagcaatagtagtattgtgtcactccaaggaaatgaaagactatgcacaaacattccggagttagctctccctctatgtccaatatcagtcaagcataaaacgaagcacaattacttggttatcaaggtagtaataccaattgttcttgttgccttcattactttgtcatgtcttgggataattcttaggaagaagaggaggaggagagagcaattggtgccacattttgaaaaatctaatcagcatacgaggaagataacatttcaagacatcgtaaaagcaacaaatcagttctcttctgctaacttaatcggttcaggatcatttggaacagtttacaaaggttgtctggagattgaggacaatattgttgctatcaagatttttaaccttgacatatttggcgcggataagagcttcgatgcagaatgtggaactctgaaaaacatacgccataggaatttggtcaaagtcattaccctgtgttctacagttgatttgacagggtcagaattcaaggctcttgtgttcaaatacatgccgaatgggaacctagaaatgtggttacatcccaaggtcaatgaacaagtccaaaggaagacattaacattaatgcaaagaattaacatagccttagatgtggcacatgctttggattatctccataaccagtctgtatgcccgataatacattgtgacctgaagcctagtaatgttcttttggatcttgacatgacagcgtgtattggagattttggccttgcaagatttctatccactagatctaatgtacaacataatacttcagcatgtttgtcttgcctaaaaggatccattggatatattgcaccaggtgaggtatttatctcctctgaggacttttatggtacattctactactagtatatactaccagtatattaaagggtaaatttggtatttgttaaaaaaatctgaaaaggttatttagtcatttaaaatagagaattattttcatcaggattaattttccatcggttgttttttctctggatctcgtcatccgggtaatagcgcttcttctcgatacatcttgcgtctccggcgtccctgctcccggcgcacttcgctcccgtgttggcgccgcgagaagggaaatcgaatcgattccacatgacgacggcgccgattgtagctctcagcgacggcgacgacgtggtcgtcagtggcggcgtggcatgctcacggaaggcggcggtcgcccatgcgtgcggcatcaagaaaaaaaaaccgctaatcgctttgactgggcgggcggcaatcgattggatccgacgaaaagaggaaacacgaattacagaattaccccacgcaaatagttaaaaagacaaatatacccccaaacaatttatactgtaggatatttgggaggaggatcagataaatttacaccgttagatcaaatatactggtagtatatactggtagtagaatgtaccgtaaaagttctcttatctctttggttagtttgtttccttttttatacgatgagtttgttttattttttttatgagtcttttttcattgttgtcaaattattgtgtggatgcagaatatggattgggcgcagatatatctaccaagggtgacgtttacagctttggagtcctcttgctagaaatgattactgggaatcgtccaactcatgaaaaattccttgatggtacaaccatgcatgaatttatctacagaggatttccaaataacatctatgagattgttgatccagtattgattcaggatggaagcattgcaacccatgtgttgcaaaattgcatcattccattagttaaaataggcctctcatgctcaatgacaccgccaaatgcacgatgggagatgggaagagtttgccgtgagatacttataatcaagggcgcattagcaaacagggacagcaagtag

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CDS seq

atgccttcggtttccttatgtccagggcttgtagtcttgctcctctacctctccatcatcctagcacgctcaacactcgccggcgctgacgaggatggcgagaacgacgaccagcgagccctgctctgcttcaagtcccaggtctccgacccgtccggtgctcttgcctcgtggcagagcaacacgtccctccagttctgcagctggaatggcgtctcgtgcaccgcgggtcgccgccgccgcgtcgccgcgctgagcctcccgtcgaagggcttggctggccccgtgccaccgtgcctcgccaacctgacctccctcgagacgctgcagctcgccggcaacggcttccacggcgtcgtaccgtccgagctcggcgctctgagccggctcagctacctcaacctcagcggcaactctctcgccggcgttatcccgtcggcgctgtcgtcgtgcgccaacctccgggtgctcggcctgtggaacaactccctcgaaggtgagatccccacaaccctgagccagtgcatggatctgcaagagatcaacctcagcaacaacaagctgcaagggagcatccctactgcctttgggacactacccaagctgcagatcctagtcctcgcgggcaacaggctcaccggcggcataccgcctttgctcggcagtagctcatctcttgttcatgtcgatcttgggggcaacagcctgaccggagagatgccggtgtccttggcgagtagcccatctctccaggtactaaggctcatggccaatagtttcagtggagagctcccggtctctctcttaaacacttcttcacttgttgctatttgcctccaaaaaaacaacttctctggaggcataccacctgtgacagcaatctcccggcctcctgtgaaatatcttagcataagagagaacggcctatcaggacaaatacctccttctctagggaaccttacctctcttgtttatcttatgcttcacaagaacaaattggttgggagcatcccagaaagtttaggtcagatttcaacgttagaaaggctgtccttgaatggcaaccacctatcagggcctgtgccaccatccctgttcaatatgtcatcactgacatatcttggcttggcagataactcgctcactggaaaattgccggccaatattgcccataccctcccaaacattcagacgttactagttacagcaaacagatttgatggcactattccagcttctctggctaatgcgtctaaactggataatctgcttcttgccagcaataggatatctggggacattccattattaggatcattgccaaacttgcaaatacttgatattggtgacaatatgctagaaacgggtgaatggagattccttgcttcgctgtcgaactgttccatgttagatacgctgatgattgactcgaataatcttgacgggaattttccaagatctgtcggtaacctttcagatagtctccaggtgctctggcttggagcaaacaaaatttctggaactattccgttggagataggtaatcttaagaacctcactgaattacgtatggactacaatcttttcagtgatagtataccaccaacacttgtaaatttgcacaagctggtagtgttatcgattgcgaagaacaaactttctggtcccttgccagatgctatggggaaccttcttcagcttaatgagctcagtttagacgggaacaacttcagtggaagtatacctactagtataggatactgcagacaactcgataaactgaatctttctcacaattcactatctggaagcataccaagtgagctcttcaaaatttcttcattttcacaatatttggacttgtcctacaatcaattatctggagatataccccaggaggctggcaacctaattaatcttggcacccttaatatctcaaataacaggttgtctggtaacatcccatccactcttggccagtgtgtgcttctagagtctcttcaaatagaaagcaactcccttgtaggaagcattccacagtcttttattaacttggtcggcatgaaagaactcgatgtttcacaaaataatttgtctggaaaaattccagagttcatggcgactttgagtaatttgcatgttcttaatttatccttcaacaattttgatggaccaattccaacgggtggtgcttttagcaatagtagtattgtgtcactccaaggaaatgaaagactatgcacaaacattccggagttagctctccctctatgtccaatatcagtcaagcataaaacgaagcacaattacttggttatcaaggtagtaataccaattgttcttgttgccttcattactttgtcatgtcttgggataattcttaggaagaagaggaggaggagagagcaattggtgccacattttgaaaaatctaatcagcatacgaggaagataacatttcaagacatcgtaaaagcaacaaatcagttctcttctgctaacttaatcggttcaggatcatttggaacagtttacaaaggttgtctggagattgaggacaatattgttgctatcaagatttttaaccttgacatatttggcgcggataagagcttcgatgcagaatgtggaactctgaaaaacatacgccataggaatttggtcaaagtcattaccctgtgttctacagttgatttgacagggtcagaattcaaggctcttgtgttcaaatacatgccgaatgggaacctagaaatgtggttacatcccaaggtcaatgaacaagtccaaaggaagacattaacattaatgcaaagaattaacatagccttagatgtggcacatgctttggattatctccataaccagtctgtatgcccgataatacattgtgacctgaagcctaaatatggattgggcgcagatatatctaccaagggtgacgtttacagctttggagtcctcttgctagaaatgattactgggaatcgtccaactcatgaaaaattccttgatggtacaaccatgcatgaatttatctacagaggatttccaaataacatctatgagattgttgatccagtattgattcaggatggaagcattgcaacccatgtgttgcaaaattgcatcattccattagttaaaataggcctctcatgctcaatgacaccgccaaatgcacgatgggagatgggaagagtttgccgtgagatacttataatcaagggcgcattagcaaacagggacagcaagtag

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Protein seq

MPSVSLCPGLVVLLLYLSIILARSTLAGADEDGENDDQRALLCFKSQVSDPSGALASWQSNTSLQFCSWNGVSCTAGRRRRVAALSLPSKGLAGPVPPCLANLTSLETLQLAGNGFHGVVPSELGALSRLSYLNLSGNSLAGVIPSALSSCANLRVLGLWNNSLEGEIPTTLSQCMDLQEINLSNNKLQGSIPTAFGTLPKLQILVLAGNRLTGGIPPLLGSSSSLVHVDLGGNSLTGEMPVSLASSPSLQVLRLMANSFSGELPVSLLNTSSLVAICLQKNNFSGGIPPVTAISRPPVKYLSIRENGLSGQIPPSLGNLTSLVYLMLHKNKLVGSIPESLGQISTLERLSLNGNHLSGPVPPSLFNMSSLTYLGLADNSLTGKLPANIAHTLPNIQTLLVTANRFDGTIPASLANASKLDNLLLASNRISGDIPLLGSLPNLQILDIGDNMLETGEWRFLASLSNCSMLDTLMIDSNNLDGNFPRSVGNLSDSLQVLWLGANKISGTIPLEIGNLKNLTELRMDYNLFSDSIPPTLVNLHKLVVLSIAKNKLSGPLPDAMGNLLQLNELSLDGNNFSGSIPTSIGYCRQLDKLNLSHNSLSGSIPSELFKISSFSQYLDLSYNQLSGDIPQEAGNLINLGTLNISNNRLSGNIPSTLGQCVLLESLQIESNSLVGSIPQSFINLVGMKELDVSQNNLSGKIPEFMATLSNLHVLNLSFNNFDGPIPTGGAFSNSSIVSLQGNERLCTNIPELALPLCPISVKHKTKHNYLVIKVVIPIVLVAFITLSCLGIILRKKRRRREQLVPHFEKSNQHTRKITFQDIVKATNQFSSANLIGSGSFGTVYKGCLEIEDNIVAIKIFNLDIFGADKSFDAECGTLKNIRHRNLVKVITLCSTVDLTGSEFKALVFKYMPNGNLEMWLHPKVNEQVQRKTLTLMQRINIALDVAHALDYLHNQSVCPIIHCDLKPKYGLGADISTKGDVYSFGVLLLEMITGNRPTHEKFLDGTTMHEFIYRGFPNNIYEIVDPVLIQDGSIATHVLQNCIIPLVKIGLSCSMTPPNARWEMGRVCREILIIKGALANRDSK

Function Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_06g0020680 OsKeNa_06g0020680.01 Chr06 23650372 23654514 + NAM
CDS seq

atgccttcggtttccttatgtccagggcttgtagtcttgctcctctacctctccatcatcctagcacgctcaacactcgccggcgctgacgaggatggcgagaacgacgaccagcgagccctgctctgcttcaagtcccaggtctccgacccgtccggtgctcttgcctcgtggcagagcaacacgtccctccagttctgcagctggaatggcgtctcgtgcaccgcgggtcgccgccgccgcgtcgccgcgctgagcctcccgtcgaagggcttggctggccccgtgccaccgtgcctcgccaacctgacctccctcgagacgctgcagctcgccggcaacggcttccacggcgtcgtaccgtccgagctcggcgctctgagccggctcagctacctcaacctcagcggcaactctctcgccggcgttatcccgtcggcgctgtcgtcgtgcgccaacctccgggtgctcggcctgtggaacaactccctcgaaggtgagatccccacaaccctgagccagtgcatggatctgcaagagatcaacctcagcaacaacaagctgcaagggagcatccctactgcctttgggacactacccaagctgcagatcctagtcctcgcgggcaacaggctcaccggcggcataccgcctttgctcggcagtagctcatctcttgttcatgtcgatcttgggggcaacagcctgaccggagagatgccggtgtccttggcgagtagcccatctctccaggtactaaggctcatggccaatagtttcagtggagagctcccggtctctctcttaaacacttcttcacttgttgctatttgcctccaaaaaaacaacttctctggaggcataccacctgtgacagcaatctcccggcctcctgtgaaatatcttagcataagagagaacggcctatcaggacaaatacctccttctctagggaaccttacctctcttgtttatcttatgcttcacaagaacaaattggttgggagcatcccagaaagtttaggtcagatttcaacgttagaaaggctgtccttgaatggcaaccacctatcagggcctgtgccaccatccctgttcaatatgtcatcactgacatatcttggcttggcagataactcgctcactggaaaattgccggccaatattgcccataccctcccaaacattcagacgttactagttacagcaaacagatttgatggcactattccagcttctctggctaatgcgtctaaactggataatctgcttcttgccagcaataggatatctggggacattccattattaggatcattgccaaacttgcaaatacttgatattggtgacaatatgctagaaacgggtgaatggagattccttgcttcgctgtcgaactgttccatgttagatacgctgatgattgactcgaataatcttgacgggaattttccaagatctgtcggtaacctttcagatagtctccaggtgctctggcttggagcaaacaaaatttctggaactattccgttggagataggtaatcttaagaacctcactgaattacgtatggactacaatcttttcagtgatagtataccaccaacacttgtaaatttgcacaagctggtagtgttatcgattgcgaagaacaaactttctggtcccttgccagatgctatggggaaccttcttcagcttaatgagctcagtttagacgggaacaacttcagtggaagtatacctactagtataggatactgcagacaactcgataaactgaatctttctcacaattcactatctggaagcataccaagtgagctcttcaaaatttcttcattttcacaatatttggacttgtcctacaatcaattatctggagatataccccaggaggctggcaacctaattaatcttggcacccttaatatctcaaataacaggttgtctggtaacatcccatccactcttggccagtgtgtgcttctagagtctcttcaaatagaaagcaactcccttgtaggaagcattccacagtcttttattaacttggtcggcatgaaagaactcgatgtttcacaaaataatttgtctggaaaaattccagagttcatggcgactttgagtaatttgcatgttcttaatttatccttcaacaattttgatggaccaattccaacgggtggtgcttttagcaatagtagtattgtgtcactccaaggaaatgaaagactatgcacaaacattccggagttagctctccctctatgtccaatatcagtcaagcataaaacgaagcacaattacttggttatcaaggtagtaataccaattgttcttgttgccttcattactttgtcatgtcttgggataattcttaggaagaagaggaggaggagagagcaattggtgccacattttgaaaaatctaatcagcatacgaggaagataacatttcaagacatcgtaaaagcaacaaatcagttctcttctgctaacttaatcggttcaggatcatttggaacagtttacaaaggttgtctggagattgaggacaatattgttgctatcaagatttttaaccttgacatatttggcgcggataagagcttcgatgcagaatgtggaactctgaaaaacatacgccataggaatttggtcaaagtcattaccctgtgttctacagttgatttgacagggtcagaattcaaggctcttgtgttcaaatacatgccgaatgggaacctagaaatgtggttacatcccaaggtcaatgaacaagtccaaaggaagacattaacattaatgcaaagaattaacatagccttagatgtggcacatgctttggattatctccataaccagtctgtatgcccgataatacattgtgacctgaagcctaaatatggattgggcgcagatatatctaccaagggtgacgtttacagctttggagtcctcttgctagaaatgattactgggaatcgtccaactcatgaaaaattccttgatggtacaaccatgcatgaatttatctacagaggatttccaaataacatctatgagattgttgatccagtattgattcaggatggaagcattgcaacccatgtgttgcaaaattgcatcattccattagttaaaataggcctctcatgctcaatgacaccgccaaatgcacgatgggagatgggaagagtttgccgtgagatacttataatcaagggcgcattagcaaacagggacagcaagtag

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Protein seq

MPSVSLCPGLVVLLLYLSIILARSTLAGADEDGENDDQRALLCFKSQVSDPSGALASWQSNTSLQFCSWNGVSCTAGRRRRVAALSLPSKGLAGPVPPCLANLTSLETLQLAGNGFHGVVPSELGALSRLSYLNLSGNSLAGVIPSALSSCANLRVLGLWNNSLEGEIPTTLSQCMDLQEINLSNNKLQGSIPTAFGTLPKLQILVLAGNRLTGGIPPLLGSSSSLVHVDLGGNSLTGEMPVSLASSPSLQVLRLMANSFSGELPVSLLNTSSLVAICLQKNNFSGGIPPVTAISRPPVKYLSIRENGLSGQIPPSLGNLTSLVYLMLHKNKLVGSIPESLGQISTLERLSLNGNHLSGPVPPSLFNMSSLTYLGLADNSLTGKLPANIAHTLPNIQTLLVTANRFDGTIPASLANASKLDNLLLASNRISGDIPLLGSLPNLQILDIGDNMLETGEWRFLASLSNCSMLDTLMIDSNNLDGNFPRSVGNLSDSLQVLWLGANKISGTIPLEIGNLKNLTELRMDYNLFSDSIPPTLVNLHKLVVLSIAKNKLSGPLPDAMGNLLQLNELSLDGNNFSGSIPTSIGYCRQLDKLNLSHNSLSGSIPSELFKISSFSQYLDLSYNQLSGDIPQEAGNLINLGTLNISNNRLSGNIPSTLGQCVLLESLQIESNSLVGSIPQSFINLVGMKELDVSQNNLSGKIPEFMATLSNLHVLNLSFNNFDGPIPTGGAFSNSSIVSLQGNERLCTNIPELALPLCPISVKHKTKHNYLVIKVVIPIVLVAFITLSCLGIILRKKRRRREQLVPHFEKSNQHTRKITFQDIVKATNQFSSANLIGSGSFGTVYKGCLEIEDNIVAIKIFNLDIFGADKSFDAECGTLKNIRHRNLVKVITLCSTVDLTGSEFKALVFKYMPNGNLEMWLHPKVNEQVQRKTLTLMQRINIALDVAHALDYLHNQSVCPIIHCDLKPKYGLGADISTKGDVYSFGVLLLEMITGNRPTHEKFLDGTTMHEFIYRGFPNNIYEIVDPVLIQDGSIATHVLQNCIIPLVKIGLSCSMTPPNARWEMGRVCREILIIKGALANRDSK

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.076650 0.659555 0.356115

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_06g0586150 SBH 0.543865 0.402507 0.170149
Nipponbare | IRGSP 1.0 | MSU LOC_Os06g38670 SBH 0.332005 0.244379 0.039538
Nipponbare | IRGSP 1.0 | RAP-db Os06g0586150 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_06g0020780 SBH 0.134115 1.062366 0.983788
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_06g0020700 SBH 0.200899 0.363559 0.528571
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_06g0020730 SBH 0.119523 0.974873 2.135322
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_06g0011100 SBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_06g0011210 SBH 12.575239 30.748129 6.738047
Minghui 63 | MH63RS3 | HZAU OsMH63_06G0365300 SBH 0.304308 1.722699 0.4225505
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_06g0010780 SBH 0.0 0.000000 0.232642
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_06G0341500 RBH 0.6795005 8.2191135 0.0777645
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_06g0020790 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_06g0011040 SBH 2.607627 24.942671 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_06g0020470 SBH 0.656196 6.885436 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_Ung0035950 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_06g0020660 RBH 0.049091 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_06G020510 RBH 0.096157 0.272748 0.217628
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_06g0011190 SBH 0.000000 5.689448 1.144959
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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