Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_06g0017580 | OGI:06066550 | 3/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr06:19510090-19512929 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gacaaataactaattcatagaccgacaaaataacttagtctgttgcaatgatccatacatcaacattcgacaaaagaaattaggccattacaacgatccatactgccAatagatggtaacaacacaagtgttcttacatgacaccagcgaattactaaaaattactttataactagattatctttctcaagcagaaccaaaacaagctgccagccttccaaattgagcatcttcactacctgtcattaaagcaacattatttccatggaatataggaggctgatcattatagaacaattgtagcatataatctggatggcaaaacaactggaaggaagtagtactactattttaagtagactattaaaggacttatttgattatgttgttctttggactgtacagtgcaagtagacatgtacatacctctcaaaaccatagcagaaagcaccaaaaagctagcaccaaagttttccattgtccctgaaataaataaataaaatgataagtgaattaagatgcttgcaattgtaattgaaaatgtgaaaacaagatgcttaatgtcctaccacaactaagtacgacgggtattgctaaacttttgccaaatatgttcaaccagatctttttttagttgggaatgtggtgcacgagcacgtattgcagctttcctacgcagcacctgatcaaagcatggattgtgcccagtagttacttcaggaggaagagcaaccgatgctccagggtccacattcagatcaataggaattttaaaccccccctctctcattttcaactatcatattatggagaataatacaagctttcatgattctcccaacactcttccgcttccacgaccgtgctgggtggcgcacaatattgaaacgggactacaggaccccaaatgcacactccacgtCtttccttgccccttcttgatactgtgcatatagcttgtgcttctctgtttgtggagcagctattgacttcacaaaggtagcccattttggatatattccatcagcaaggtagtatcctgtgttatactcattaccattgacagaaaactttactctaggagcttcccctttcagcacatcaagaaatagtggggattggttcagcacattgatgtcattatttgaccccgtgacaccgaagaaagcatgccatatgcggaggtcacgagtagcaaccgcttcgaggataattgttggcactccatagtcaccgcgggtaaactgccctctccatgctgttgggcatttttcccacctccaatgcatgcaatcaatactgcctagcatcccagggaagcccctagactcattaacttgaagtatacgctccacatcctcatatgtgggacgtcgcaaatactctgaaccaaatacctcaatcacccctcgtgcgcacatatccaagcactgcaaggacgtgctcttgccaatcttaaggtactcatctaggctatcagcagggctgccatacgctagcatgcgcattgcagctgtgcacttctgtaaaggtgagagcccttggcgaccactgcaatctacctttagtgtaaagtaaggagaccaccttccaagggcactcactatgcgaagaaaaaggggtcttcccatacgaaatcttgtacggaacatgctctcagggtaaagagggtcttcactAaagtagtcagctatgagacgatgatgtgctgctgtgtgatccctcttgattgtcttccttgtcacactcttccttctgatttttccaattctaagcttggtcttgatcttttccatgacccttcttgcaaaagaatctatgaggttctgctcaacaatgtattggtctataattttggaaggatctaattcaccagaatcatctggagacatggtggagacaaggagtgcaaggaatgggaaagaagtgttgaaaggaatgggaaagaagtgttgaaaggaatggcagagggatggatagttagcaccattagaccaatatatatatatatgggccaacagtacactgttGggaatgcatactagctagtagcatgtttatttgaattacccttaattagattattgggaatgcatacacagagcatgtttatttggattactattaattagactattgggaatgcatacacaaagcatgtttatttggattactattaactagactattgggaattcaagactgcatgtttatctgcacattgttgacttgactgcaTGttaattttgcaactgctgacttgactacatgtttttctggaaataatagctacatgctgattatattacaagttagattacatcaatatttgcaactctttgaattgtgcaagaaacATatatatgtttgcaggaagttcaattgcagcaagtaaaaaaaaatacaacaagctttaattagagactggaaagtgaagataccttagtattacggaaacaacttctccctcatacacttcaatgccatcaaatgctcggatctaacatcatcaggaatatcttttgtatcttgtaacatgagagaccgatatgtttccaacataacagcctccttgtgctccatggctgcaaggtgcgctaacttttttgattcaaggttatcactagcaacacgcctctgagtctctagtagttcatcacgacctttatttgccatctcctgaacttctttaagcttgtcaatttcatcatcagtatctgatagataaacctttgccttccttttgcgtctgcctttaccattacgttgcgccttagcagtttttgttcctattggacgtttaatatcttcaggactgttaggagtggacatttgctcca
More
|
||||||||||
| CDS seq | atgtccactcctaacagtcctgaagatattaaacgtccaataggaacaaaaactgctaaggcgcaacgtaatggtaaaggcagacgcaaaaggaaggcaaaggtttatctatcagatactgatgatgaaattgacaagcttaaagaagttcaggagatggcaaataaaggtcgtgatgaactactagagactcagaggcgtgttgctagtgataaccttgaatcaaaaaagttagcgcaccttgcagccatggagcacaaggaggctgttatgttggaaacatatcggtctctcatgttacaagatacaaaagatattcctgatgatgttagatccgagcatttgatggcattgaagtgtatgagggagaagttgtttccgtaa |
||||||||||
| Protein seq | MSTPNSPEDIKRPIGTKTAKAQRNGKGRRKRKAKVYLSDTDDEIDKLKEVQEMANKGRDELLETQRRVASDNLESKKLAHLAAMEHKEAVMLETYRSLMLQDTKDIPDDVRSEHLMALKCMREKLFP |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0017580 | OsKeNa_06g0017580.01 | Chr06 | 19510090 | 19512929 | - | NAM | ||
| CDS seq | atgtccactcctaacagtcctgaagatattaaacgtccaataggaacaaaaactgctaaggcgcaacgtaatggtaaaggcagacgcaaaaggaaggcaaaggtttatctatcagatactgatgatgaaattgacaagcttaaagaagttcaggagatggcaaataaaggtcgtgatgaactactagagactcagaggcgtgttgctagtgataaccttgaatcaaaaaagttagcgcaccttgcagccatggagcacaaggaggctgttatgttggaaacatatcggtctctcatgttacaagatacaaaagatattcctgatgatgttagatccgagcatttgatggcattgaagtgtatgagggagaagttgtttccgtaa
More
|
|||||||
| Protein seq | MSTPNSPEDIKRPIGTKTAKAQRNGKGRRKRKAKVYLSDTDDEIDKLKEVQEMANKGRDELLETQRRVASDNLESKKLAHLAAMEHKEAVMLETYRSLMLQDTKDIPDDVRSEHLMALKCMREKLFP |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0716600 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g36870 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0716600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0017760 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0017690 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0017590 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0017750 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0297100 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0017280 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0272500 | SBH | 0 | 0 | 0.012043 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0017630 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0017560 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0017250 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0017970 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0017400 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G017400 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
