Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0716600 | OGI:06085060 | 2/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:30439245-30441564 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCGGGGAGGCGACGGAGGCGCGGGATCAGCTGCACGGGATCAGCTCTCTCGCGCGCGGAACAGGTTCGCGCCTTCCTCGCCCGCCAAAATCTCTCTCGCGCGTGTTGAAATAGCCCCCCCTGCGTTCCCCATCCAACCCTATTTCGATTTGGCCACCATGTCGCGGCAGGCACGGAAGGAGGCGGCGGCGGCGGCGCAAGATATGCTGAAGTTGGATGCGGCTCAGATGCGCAAGCCAGCTGCATCGCAATCTCGAAAGGGTGCGGCGGCGCCGATGCGGAAGGCCCAGGGAGGAGCTCGGGCGGCGTCGATGGTGCCGGAGCAGAGCAGTTCAGGGTTGGCGGCGCGTGTGCCAGAGCACCGGAGTTCGAGATATGGCGCGGCTAGTCCACCACCAAGCTCCTTCACCGACGGCAGCTGCTTCTTCAACGGCAGTGCCGGCGGCTTCTTCGGCAACGCCGGCCAAAGCCCTAGTGGTCAACCATGGAGTTCTTAATCTTCAGATCCTGCAACATGGTACTATCTCTGAACTTTGCTTCTGTGATGAGCTCAATGATGGGAATCATATGGCTAGGAATTAATTTTAGATGTTATTTGCACTTCCCTCGCTTATACAAGATTTGGGATACACTGTCATGAGTTTCAGTATTGTGGTTGATGCAAAGATTGATTGCACTGGTGCAGATTTCTTTGATAGTTTAATAAAGCTATGTAACTAGTTTTTATCCACTGTATAACATCAAAGAGGATGAAGCACTGAAACAAACATTAGTTCCTACTTTTACACATAACATTAGTCCCTAGTTGCTTTCATTGCTCATATATATGTGTAAAATATGGCAGGGGAAACAATGCAACACCTCTTGGAGGCTTCATAAACTTGATCCAGCCTAACTTGTCTCAACAATTTAATTTTGTTGGAGACCAAAATCAGTCAGAAGATGATTACTCGACTCCTATTTCAGCTAGGGACAATACATATGTTAATGTTGACAGTGGTGATGAGACACCTAGGACTGAGAAAAGAATCTTTTGGACTCAAGAAGAAGATGTTAGGATGGTGAGTCTCACTGTAAATTCACTGTGTTTATAGTTTTTTTACTTACCATAACAGTCCAAGTGATAATATATGCTAATTAACATTTACAGATGAGCTCTTGGCTGCTCAATTCAACGGACTCAACCGTTGGTGCTGATAGGAAGAATGAACAATATTGGACTGATGTTGAGGCTACTTACAATGAGACTACACCAAGTCATAGGAGAAGAAATGCCAAGCAAATCAAGGACCGCTTTCATAAGGTAAATAAGTGGACTGACCTTTTCCATAGTGCTTGGTTGAAGGCTAGAATGATTTATACAAGTGGCTATAATGATCAAATGTGGATTGAGAAGGCCCATGTATTCTATATAAAAGACAATGAGAAACTCAATCTAGGTCCTTTTGTGTTGATGGAAGTATGGAACACAGTTAAAACTGAAGCAAAGTGGATCACATACAACAATGGCCTGAAAGCAGCAAGAAAAAGAATAGCAACAAAGGGGTTAGGCAAGGAGAAGGAAGGAGAGGATAGTAGCCCTTTATATGTAGATGAACTTGATGAACAGCCAAGACCAATGGGGCAAAAAAGAGCTAAAAAACTACAATATGCCCAAAGTAAGGAGGTGGACCATATTGATCTTGAGGAGCTAGACAAATTTAGTAAACTCCAGAATGAACAGAATGCAAATAGGCTGAAAGTATTGGAAATACAACAGAAGCTATCATCCGAGAAGATCGAACAAACAAAGATTTCCCATCTTGCAGCAAAGGAGCAAATGGAGGCAGCAAAGGTGCAAAGAGAGGCAAGAAAATTAGAGGTTGAAGCTAGGATGTATGAGACATATAACCGCCTTCTTGTAGTTGACACAAGTCTGATGTCCGATGAAGAGAAGGTTGACCATGGAAATACATTGAAGTTTTTGAAGAAGAAATTATTTACTGATAATTGAGGTGAGTTTCATGTTTACTTCTCTGTCTAGCCTAACTTGTCTGAATTTTGCTATGTTCTATCAATTTTCCTGCATGTTATCAATGTTATATATCTGCATGTTATTTTGCTATGTTCTATCAATTCTGCTCATATTTACTATTTGTCTATCCTAAATTCTGTAATTGGGACCTAGTACTTTTGCAGGTCTTGGAGAAGATTGCTTGCTATGTTACTGTAAGGGGTGAGAAGGCAATGCAGCTTCTGGAGATTGGACTGAAGGTCAAAGAATATGAACTAGTCTCTGTTTTGCTATGTTTTGGAATCCAGGAGCACATCAATTGCTAA
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| CDS seq | ATGCGGGGAGGCGACGGAGGCGCGGGATCAGCTGCACGGGATCAGCTCTCTCGCGCGCGGAACAGGTTCGCGCCTTCCTCGCCCGCCAAAATCTCTCTCGCGCGTGTTGAAATAGCCCCCCCTGCGTTCCCCATCCAACCCTATTTCGATTTGGCCACCATGTCGCGGCAGGCACGGAAGGAGGCGGCGGCGGCGGCGCAAGATATGCTGAAGTTGGATGCGGCTCAGATGCGCAAGCCAGCTGCATCGCAATCTCGAAAGGGTGCGGCGGCGCCGATGCGGAAGGCCCAGGGAGGAGCTCGGGCGGCGTCGATGGTGCCGGAGCAGAGCAGTTCAGGGTTGGCGGCGCGTGTGCCAGAGCACCGGAGTTCGAGATATGGCGCGGCTAGTCCACCACCAAGCTCCTTCACCGACGGCAGCTGCTTCTTCAACGGCAGTGCCGGCGGCTTCTTCGGCAACGCCGGCCAAAGCCCTAGTGACCAAAATCAGTCAGAAGATGATTACTCGACTCCTATTTCAGCTAGGGACAATACATATGTTAATGTTGACAGTGGTGATGAGACACCTAGGACTGAGAAAAGAATCTTTTGGACTCAAGAAGAAGATGTTAGGATGATGAGCTCTTGGCTGCTCAATTCAACGGACTCAACCGTTGGTGCTGATAGGAAGAATGAACAATATTGGACTGATGTTGAGGCTACTTACAATGAGACTACACCAAGTCATAGGAGAAGAAATGCCAAGCAAATCAAGGACCGCTTTCATAAGGTAAATAAGTGGACTGACCTTTTCCATAGTGCTTGGTTGAAGGCTAGAATGATTTATACAAGTGGCTATAATGATCAAATGTGGATTGAGAAGGCCCATGTATTCTATATAAAAGACAATGAGAAACTCAATCTAGGTCCTTTTGTGTTGATGGAAGTATGGAACACAGTTAAAACTGAAGCAAAGTGGATCACATACAACAATGGCCTGAAAGCAGCAAGAAAAAGAATAGCAACAAAGGGGTTAGGCAAGGAGAAGGAAGGAGAGGATAGTAGCCCTTTATATGTAGATGAACTTGATGAACAGCCAAGACCAATGGGGCAAAAAAGAGCTAAAAAACTACAATATGCCCAAAGTAAGGAGGTGGACCATATTGATCTTGAGGAGCTAGACAAATTTAGTAAACTCCAGAATGAACAGAATGCAAATAGGCTGAAAGTATTGGAAATACAACAGAAGCTATCATCCGAGAAGATCGAACAAACAAAGATTTCCCATCTTGCAGCAAAGGAGCAAATGGAGGCAGCAAAGGTGCAAAGAGAGGCAAGAAAATTAGAGGTTGAAGCTAGGATGTATGAGACATATAACCGCCTTCTTGTAGTTGACACAAGTCTGATGTCCGATGAAGAGAAGGTCTTGGAGAAGATTGCTTGCTATGTTACTGTAAGGGGTGAGAAGGCAATGCAGCTTCTGGAGATTGGACTGAAGGTCAAAGAATATGAACTAGTCTCTGTTTTGCTATGTTTTGGAATCCAGGAGCACATCAATTGCTAA
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| Protein seq | MRGGDGGAGSAARDQLSRARNRFAPSSPAKISLARVEIAPPAFPIQPYFDLATMSRQARKEAAAAAQDMLKLDAAQMRKPAASQSRKGAAAPMRKAQGGARAASMVPEQSSSGLAARVPEHRSSRYGAASPPPSSFTDGSCFFNGSAGGFFGNAGQSPSDQNQSEDDYSTPISARDNTYVNVDSGDETPRTEKRIFWTQEEDVRMMSSWLLNSTDSTVGADRKNEQYWTDVEATYNETTPSHRRRNAKQIKDRFHKVNKWTDLFHSAWLKARMIYTSGYNDQMWIEKAHVFYIKDNEKLNLGPFVLMEVWNTVKTEAKWITYNNGLKAARKRIATKGLGKEKEGEDSSPLYVDELDEQPRPMGQKRAKKLQYAQSKEVDHIDLEELDKFSKLQNEQNANRLKVLEIQQKLSSEKIEQTKISHLAAKEQMEAAKVQREARKLEVEARMYETYNRLLVVDTSLMSDEEKVLEKIACYVTVRGEKAMQLLEIGLKVKEYELVSVLLCFGIQEHINC |
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| Function | 60S ribosomal protein L11 [UniProtKB/Swiss-Prot:Q0DK10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0716600 | OsNip_06t0716600-00 | Chr06 | 30439245 | 30441564 | + | RAP2018-11-26 | ||
| CDS seq | ATGCGGGGAGGCGACGGAGGCGCGGGATCAGCTGCACGGGATCAGCTCTCTCGCGCGCGGAACAGGTTCGCGCCTTCCTCGCCCGCCAAAATCTCTCTCGCGCGTGTTGAAATAGCCCCCCCTGCGTTCCCCATCCAACCCTATTTCGATTTGGCCACCATGTCGCGGCAGGCACGGAAGGAGGCGGCGGCGGCGGCGCAAGATATGCTGAAGTTGGATGCGGCTCAGATGCGCAAGCCAGCTGCATCGCAATCTCGAAAGGGTGCGGCGGCGCCGATGCGGAAGGCCCAGGGAGGAGCTCGGGCGGCGTCGATGGTGCCGGAGCAGAGCAGTTCAGGGTTGGCGGCGCGTGTGCCAGAGCACCGGAGTTCGAGATATGGCGCGGCTAGTCCACCACCAAGCTCCTTCACCGACGGCAGCTGCTTCTTCAACGGCAGTGCCGGCGGCTTCTTCGGCAACGCCGGCCAAAGCCCTAGTGACCAAAATCAGTCAGAAGATGATTACTCGACTCCTATTTCAGCTAGGGACAATACATATGTTAATGTTGACAGTGGTGATGAGACACCTAGGACTGAGAAAAGAATCTTTTGGACTCAAGAAGAAGATGTTAGGATGATGAGCTCTTGGCTGCTCAATTCAACGGACTCAACCGTTGGTGCTGATAGGAAGAATGAACAATATTGGACTGATGTTGAGGCTACTTACAATGAGACTACACCAAGTCATAGGAGAAGAAATGCCAAGCAAATCAAGGACCGCTTTCATAAGGTAAATAAGTGGACTGACCTTTTCCATAGTGCTTGGTTGAAGGCTAGAATGATTTATACAAGTGGCTATAATGATCAAATGTGGATTGAGAAGGCCCATGTATTCTATATAAAAGACAATGAGAAACTCAATCTAGGTCCTTTTGTGTTGATGGAAGTATGGAACACAGTTAAAACTGAAGCAAAGTGGATCACATACAACAATGGCCTGAAAGCAGCAAGAAAAAGAATAGCAACAAAGGGGTTAGGCAAGGAGAAGGAAGGAGAGGATAGTAGCCCTTTATATGTAGATGAACTTGATGAACAGCCAAGACCAATGGGGCAAAAAAGAGCTAAAAAACTACAATATGCCCAAAGTAAGGAGGTGGACCATATTGATCTTGAGGAGCTAGACAAATTTAGTAAACTCCAGAATGAACAGAATGCAAATAGGCTGAAAGTATTGGAAATACAACAGAAGCTATCATCCGAGAAGATCGAACAAACAAAGATTTCCCATCTTGCAGCAAAGGAGCAAATGGAGGCAGCAAAGGTGCAAAGAGAGGCAAGAAAATTAGAGGTTGAAGCTAGGATGTATGAGACATATAACCGCCTTCTTGTAGTTGACACAAGTCTGATGTCCGATGAAGAGAAGGTCTTGGAGAAGATTGCTTGCTATGTTACTGTAAGGGGTGAGAAGGCAATGCAGCTTCTGGAGATTGGACTGAAGGTCAAAGAATATGAACTAGTCTCTGTTTTGCTATGTTTTGGAATCCAGGAGCACATCAATTGCTAA
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| Protein seq | MRGGDGGAGSAARDQLSRARNRFAPSSPAKISLARVEIAPPAFPIQPYFDLATMSRQARKEAAAAAQDMLKLDAAQMRKPAASQSRKGAAAPMRKAQGGARAASMVPEQSSSGLAARVPEHRSSRYGAASPPPSSFTDGSCFFNGSAGGFFGNAGQSPSDQNQSEDDYSTPISARDNTYVNVDSGDETPRTEKRIFWTQEEDVRMMSSWLLNSTDSTVGADRKNEQYWTDVEATYNETTPSHRRRNAKQIKDRFHKVNKWTDLFHSAWLKARMIYTSGYNDQMWIEKAHVFYIKDNEKLNLGPFVLMEVWNTVKTEAKWITYNNGLKAARKRIATKGLGKEKEGEDSSPLYVDELDEQPRPMGQKRAKKLQYAQSKEVDHIDLEELDKFSKLQNEQNANRLKVLEIQQKLSSEKIEQTKISHLAAKEQMEAAKVQREARKLEVEARMYETYNRLLVVDTSLMSDEEKVLEKIACYVTVRGEKAMQLLEIGLKVKEYELVSVLLCFGIQEHINC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g50290 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0716600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0019100 | SBH | 0.807817 | 40.082695 | 9.410581 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0018960 | SBH | 0.452189 | 17.758160 | 5.101254 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0019020 | SBH | 1.411471 | 49.850430 | 12.817973 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0018850 | SBH | 0.402923 | 3.518540 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0019200 | SBH | 2.556376 | 54.531830 | 22.633480 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0405000 | SBH | 0 | 0 | 0.010422 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0018690 | SBH | 0.598775 | 5.367084 | 1.180488 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0386400 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0019140 | SBH | 0.355591 | 0.594176 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0019080 | SBH | 0.402586 | 53.857136 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0018730 | SBH | 12.875560 | 30.661816 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0019460 | SBH | 0.939835 | 4.665866 | 2.556925 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0018910 | SBH | 0.281655 | 16.347170 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G018830 | SBH | 0.897462 | 31.168720 | 5.090125 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008030 | RBH | 0.0 | 0.0 | 0.0 |
