Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_06g0016270 OGI:06046960 | 16/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr06:17356091-17359058
Gene Symbol -
DNA seq

atttcccctccctctctctctgaatttctttctccccaaaccaaaaccaaaccgaagcttccccatctcgcgtgaacttcggagcaaggaagaacaaggcgccgcgccggatttagccccgcccccctctccggggtatcccccctcctctcctctggtcggttcttgcggtgagtcccccgctgatttgtcctgtgaattcttgtgagattatttttcTTtttttttttggggcggttggcttgggatttggattggtggggagtttttctgatctgtgtggtggtgtggtggtgtgcttgcagggtttgattggagtgaggtgaatcggtgaggttgtggctcggttggcgtccggatcggagggggttcgggcccttcctgattaatccctcttctggtgagcaatttctctggtttttttgtgttaatttgagctgaatttaccctggggatcgggtggatttgatggtctgaggctgatcgatccggaatgatttctcctttgtagattccgtgtgggggattcaatcactggtgggcaaaggcgagatatttcgtcacttctccccctcatctaaccatgtctggtacgtttctcttcatgctctggaatttctccccttcggttgaatgtttcggtggttaataacgaatggctctctgaattttgtgcaggtttgatgtgcctggagatcaagatgggattgtaaccacgctggttatctcgcgatcgcagagggtttcctccatcctctaaggaaggaaaggaacccttgccctttcttctccatggcttctaattcgtagtgtgaaggatctgatttttaggttagtgtaaatagtagcagtagttgaggaagcttcggcatcctaaggacctcctgtgaagatgtcgtctgctgccattgccattagcccgatggtggaagagtttgctctcctgcccatctgcttcgacggcagccggtcgccccactgtttgtccgggtcacagctgcaggattcgattatcatctttcttgctgtgcctggtgccccaccgatgccaatgagtgtgctcggctcggagtccatcgcctcggtcaagctgcgcattcagcggttcaaggggttcgtggttaacaagcagaggcttgtgcttgatgggcacgagctggcaaggaacaactgccatgtgaaggattatgggcttgccgatggaaatgttctgcaccttgttatccgcttggctgatcttcgcttgattaacatcgagactaccagtggaaagaagtttcagttccaggtggaccagagccgcaatgtcaagtatctcaagagtaagctggcagtggagggagatgaggaccttggtgaggatcacaagcttgaatgtgatggcaaggagcttgaggaccaccagctgattgctgatattagcaagaaggatgatgctgtgatccatttattcatccgcaagccagcaaagttacggacacagcaagttgataaagacacggtggttacagttgtcactccgcaggagaaagagaaccttcaaaatgaagctcatgctgtgaaccctgctaaaccagctggtgctaggcctgctcttgttgaaccaattatcgttaaccacaaggtgaagctatcacttgaagtgatgagaatgattagctcagccatagctggtcttgagaatggatacttgccagtgatgtcagctgaaggttcagggggtgtttacttcatgcaagatgcatcaggagagaagaatattgcagtgtttaagcccagagatgaggaacctatggctaaaaacaacccaagagggcttccagtgtcgactgatggagaaggcatgaagagggggacacttgtaggggaaggtgcatttagggaagttgctgcttatattcttgaccatccaattggtgatcatgaatctgaagaacgtatcgggttctctggtgtgcctcccacagcattggtccggagcttacacagggggaagagcttcaagattggatcactgcagatgttcattcagaacaatggaagttgtgaggatatgggtccccgagcatttccagtgaaggaggtccacaaaatagcagtgttagatcttaggttagcaaacgctgatcgtcatgcagggaacattttagtgtgcaaggatgaagaaggtggcaattacaagttggttccaattgatcatggttactgcttgccagagaaggtacacgttactctctagcactcacttttcttcttgcatgagatagtacttattctggtagactaacgataattttttttccattgtgacgcagtttgaagattgtacctttgagtggctgtactggccccaggctcgtgaaccattcagtgatgaaaccattgcatacatcaaatcactagacgctgaagaggacatcaagcttctcaagttccatgggtgggagctgtctgcaagatgtgctcgtgtcctgcgcatcagcaccatgcttttaaagaaaggtgcagcacgaggcctcacaccgtatgacatcgggcgtatactgtgcagggaaactgtgaatagagactctgagattgaggacatcgtccaggaagccgagggccatgttctcccagggtcaagtgaagtaatcttcttagaaaccgtatctgaaatcatagaccgtcacctcgacaagaagttcgcttagaaacccagaataactgatctagttgttcagctgtatccagtcagtttggtgtaagtatgttgacaaaccactcttcaatggactaaatgatttcatttgtttgtagcatctcaaaccttcaagtgcattacctacatacattttgtgaatatgtaagcatgtgttgtgtgttggtcgtgcgcatcatcagcatggtactgtctgagagacgaaataaaatgttgatttagtgctgtttttgctggtgctgttctttaactgtactccaaagtttg

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CDS seq

atgtcgtctgctgccattgccattagcccgatggtggaagagtttgctctcctgcccatctgcttcgacggcagccggtcgccccactgtttgtccgggtcacagctgcaggattcgattatcatctttcttgctgtgcctggtgccccaccgatgccaatgagtgtgctcggctcggagtccatcgcctcggtcaagctgcgcattcagcggttcaaggggttcgtggttaacaagcagaggcttgtgcttgatgggcacgagctggcaaggaacaactgccatgtgaaggattatgggcttgccgatggaaatgttctgcaccttgttatccgcttggctgatcttcgcttgattaacatcgagactaccagtggaaagaagtttcagttccaggtggaccagagccgcaatgtcaagtatctcaagagtaagctggcagtggagggagatgaggaccttggtgaggatcacaagcttgaatgtgatggcaaggagcttgaggaccaccagctgattgctgatattagcaagaaggatgatgctgtgatccatttattcatccgcaagccagcaaagttacggacacagcaagttgataaagacacggtggttacagttgtcactccgcaggagaaagagaaccttcaaaatgaagctcatgctgtgaaccctgctaaaccagctggtgctaggcctgctcttgttgaaccaattatcgttaaccacaaggtgaagctatcacttgaagtgatgagaatgattagctcagccatagctggtcttgagaatggatacttgccagtgatgtcagctgaaggttcagggggtgtttacttcatgcaagatgcatcaggagagaagaatattgcagtgtttaagcccagagatgaggaacctatggctaaaaacaacccaagagggcttccagtgtcgactgatggagaaggcatgaagagggggacacttgtaggggaaggtgcatttagggaagttgctgcttatattcttgaccatccaattggtgatcatgaatctgaagaacgtatcgggttctctggtgtgcctcccacagcattggtccggagcttacacagggggaagagcttcaagattggatcactgcagatgttcattcagaacaatggaagttgtgaggatatgggtccccgagcatttccagtgaaggaggtccacaaaatagcagtgttagatcttaggttagcaaacgctgatcgtcatgcagggaacattttagtgtgcaaggatgaagaaggtggcaattacaagttggttccaattgatcatggttactgcttgccagagaagtttgaagattgtacctttgagtggctgtactggccccaggctcgtgaaccattcagtgatgaaaccattgcatacatcaaatcactagacgctgaagaggacatcaagcttctcaagttccatgggtgggagctgtctgcaagatgtgctcgtgtcctgcgcatcagcaccatgcttttaaagaaaggtgcagcacgaggcctcacaccgtatgacatcgggcgtatactgtgcagggaaactgtgaatagagactctgagattgaggacatcgtccaggaagccgagggccatgttctcccagggtcaagtgaagtaatcttcttagaaaccgtatctgaaatcatagaccgtcacctcgacaagaagttcgcttag

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Protein seq

MSSAAIAISPMVEEFALLPICFDGSRSPHCLSGSQLQDSIIIFLAVPGAPPMPMSVLGSESIASVKLRIQRFKGFVVNKQRLVLDGHELARNNCHVKDYGLADGNVLHLVIRLADLRLINIETTSGKKFQFQVDQSRNVKYLKSKLAVEGDEDLGEDHKLECDGKELEDHQLIADISKKDDAVIHLFIRKPAKLRTQQVDKDTVVTVVTPQEKENLQNEAHAVNPAKPAGARPALVEPIIVNHKVKLSLEVMRMISSAIAGLENGYLPVMSAEGSGGVYFMQDASGEKNIAVFKPRDEEPMAKNNPRGLPVSTDGEGMKRGTLVGEGAFREVAAYILDHPIGDHESEERIGFSGVPPTALVRSLHRGKSFKIGSLQMFIQNNGSCEDMGPRAFPVKEVHKIAVLDLRLANADRHAGNILVCKDEEGGNYKLVPIDHGYCLPEKFEDCTFEWLYWPQAREPFSDETIAYIKSLDAEEDIKLLKFHGWELSARCARVLRISTMLLKKGAARGLTPYDIGRILCRETVNRDSEIEDIVQEAEGHVLPGSSEVIFLETVSEIIDRHLDKKFA

Function Phosphatidylinositol 4-kinase gamma 4 [UniProtKB/Swiss-Prot:Q6K881]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_06g0016270 OsKeNa_06g0016270.02 Chr06 17356091 17359058 + NAM
CDS seq

atgtcgtctgctgccattgccattagcccgatggtggaagagtttgctctcctgcccatctgcttcgacggcagccggtcgccccactgtttgtccgggtcacagctgcaggattcgattatcatctttcttgctgtgcctggtgccccaccgatgccaatgagtgtgctcggctcggagtccatcgcctcggtcaagctgcgcattcagcggttcaaggggttcgtggttaacaagcagaggcttgtgcttgatgggcacgagctggcaaggaacaactgccatgtgaaggattatgggcttgccgatggaaatgttctgcaccttgttatccgcttggctgatcttcgcttgattaacatcgagactaccagtggaaagaagtttcagttccaggtggaccagagccgcaatgtcaagtatctcaagagtaagctggcagtggagggagatgaggaccttggtgaggatcacaagcttgaatgtgatggcaaggagcttgaggaccaccagctgattgctgatattagcaagaaggatgatgctgtgatccatttattcatccgcaagccagcaaagttacggacacagcaagttgataaagacacggtggttacagttgtcactccgcaggagaaagagaaccttcaaaatgaagctcatgctgtgaaccctgctaaaccagctggtgctaggcctgctcttgttgaaccaattatcgttaaccacaaggtgaagctatcacttgaagtgatgagaatgattagctcagccatagctggtcttgagaatggatacttgccagtgatgtcagctgaaggttcagggggtgtttacttcatgcaagatgcatcaggagagaagaatattgcagtgtttaagcccagagatgaggaacctatggctaaaaacaacccaagagggcttccagtgtcgactgatggagaaggcatgaagagggggacacttgtaggggaaggtgcatttagggaagttgctgcttatattcttgaccatccaattggtgatcatgaatctgaagaacgtatcgggttctctggtgtgcctcccacagcattggtccggagcttacacagggggaagagcttcaagattggatcactgcagatgttcattcagaacaatggaagttgtgaggatatgggtccccgagcatttccagtgaaggaggtccacaaaatagcagtgttagatcttaggttagcaaacgctgatcgtcatgcagggaacattttagtgtgcaaggatgaagaaggtggcaattacaagttggttccaattgatcatggttactgcttgccagagaagtttgaagattgtacctttgagtggctgtactggccccaggctcgtgaaccattcagtgatgaaaccattgcatacatcaaatcactagacgctgaagaggacatcaagcttctcaagttccatgggtgggagctgtctgcaagatgtgctcgtgtcctgcgcatcagcaccatgcttttaaagaaaggtgcagcacgaggcctcacaccgtatgacatcgggcgtatactgtgcagggaaactgtgaatagagactctgagattgaggacatcgtccaggaagccgagggccatgttctcccagggtcaagtgaagtaatcttcttagaaaccgtatctgaaatcatagaccgtcacctcgacaagaagttcgcttag

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Protein seq

MSSAAIAISPMVEEFALLPICFDGSRSPHCLSGSQLQDSIIIFLAVPGAPPMPMSVLGSESIASVKLRIQRFKGFVVNKQRLVLDGHELARNNCHVKDYGLADGNVLHLVIRLADLRLINIETTSGKKFQFQVDQSRNVKYLKSKLAVEGDEDLGEDHKLECDGKELEDHQLIADISKKDDAVIHLFIRKPAKLRTQQVDKDTVVTVVTPQEKENLQNEAHAVNPAKPAGARPALVEPIIVNHKVKLSLEVMRMISSAIAGLENGYLPVMSAEGSGGVYFMQDASGEKNIAVFKPRDEEPMAKNNPRGLPVSTDGEGMKRGTLVGEGAFREVAAYILDHPIGDHESEERIGFSGVPPTALVRSLHRGKSFKIGSLQMFIQNNGSCEDMGPRAFPVKEVHKIAVLDLRLANADRHAGNILVCKDEEGGNYKLVPIDHGYCLPEKFEDCTFEWLYWPQAREPFSDETIAYIKSLDAEEDIKLLKFHGWELSARCARVLRISTMLLKKGAARGLTPYDIGRILCRETVNRDSEIEDIVQEAEGHVLPGSSEVIFLETVSEIIDRHLDKKFA

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_06g0016270 OsKeNa_06g0016270.01 Chr06 17356091 17359058 + NAM
CDS seq

atgtcgtctgctgccattgccattagcccgatggtggaagagtttgctctcctgcccatctgcttcgacggcagccggtcgccccactgtttgtccgggtcacagctgcaggattcgattatcatctttcttgctgtgcctggtgccccaccgatgccaatgagtgtgctcggctcggagtccatcgcctcggtcaagctgcgcattcagcggttcaaggggttcgtggttaacaagcagaggcttgtgcttgatgggcacgagctggcaaggaacaactgccatgtgaaggattatgggcttgccgatggaaatgttctgcaccttgttatccgcttggctgatcttcgcttgattaacatcgagactaccagtggaaagaagtttcagttccaggtggaccagagccgcaatgtcaagtatctcaagagtaagctggcagtggagggagatgaggaccttggtgaggatcacaagcttgaatgtgatggcaaggagcttgaggaccaccagctgattgctgatattagcaagaaggatgatgctgtgatccatttattcatccgcaagccagcaaagttacggacacagcaagttgataaagacacggtggttacagttgtcactccgcaggagaaagagaaccttcaaaatgaagctcatgctgtgaaccctgctaaaccagctggtgctaggcctgctcttgttgaaccaattatcgttaaccacaaggtgaagctatcacttgaagtgatgagaatgattagctcagccatagctggtcttgagaatggatacttgccagtgatgtcagctgaaggttcagggggtgtttacttcatgcaagatgcatcaggagagaagaatattgcagtgtttaagcccagagatgaggaacctatggctaaaaacaacccaagagggcttccagtgtcgactgatggagaaggcatgaagagggggacacttgtaggggaaggtgcatttagggaagttgctgcttatattcttgaccatccaattggtgatcatgaatctgaagaacgtatcgggttctctggtgtgcctcccacagcattggtccggagcttacacagggggaagagcttcaagattggatcactgcagatgttcattcagaacaatggaagttgtgaggatatgggtccccgagcatttccagtgaaggaggtccacaaaatagcagtgttagatcttaggttagcaaacgctgatcgtcatgcagggaacattttagtgtgcaaggatgaagaaggtggcaattacaagttggttccaattgatcatggttactgcttgccagagaagtttgaagattgtacctttgagtggctgtactggccccaggctcgtgaaccattcagtgatgaaaccattgcatacatcaaatcactagacgctgaagaggacatcaagcttctcaagttccatgggtgggagctgtctgcaagatgtgctcgtgtcctgcgcatcagcaccatgcttttaaagaaaggtgcagcacgaggcctcacaccgtatgacatcgggcgtatactgtgcagggaaactgtgaatagagactctgagattgaggacatcgtccaggaagccgagggccatgttctcccagggtcaagtgaagtaatcttcttagaaaccgtatctgaaatcatagaccgtcacctcgacaagaagttcgcttag

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Protein seq

MSSAAIAISPMVEEFALLPICFDGSRSPHCLSGSQLQDSIIIFLAVPGAPPMPMSVLGSESIASVKLRIQRFKGFVVNKQRLVLDGHELARNNCHVKDYGLADGNVLHLVIRLADLRLINIETTSGKKFQFQVDQSRNVKYLKSKLAVEGDEDLGEDHKLECDGKELEDHQLIADISKKDDAVIHLFIRKPAKLRTQQVDKDTVVTVVTPQEKENLQNEAHAVNPAKPAGARPALVEPIIVNHKVKLSLEVMRMISSAIAGLENGYLPVMSAEGSGGVYFMQDASGEKNIAVFKPRDEEPMAKNNPRGLPVSTDGEGMKRGTLVGEGAFREVAAYILDHPIGDHESEERIGFSGVPPTALVRSLHRGKSFKIGSLQMFIQNNGSCEDMGPRAFPVKEVHKIAVLDLRLANADRHAGNILVCKDEEGGNYKLVPIDHGYCLPEKFEDCTFEWLYWPQAREPFSDETIAYIKSLDAEEDIKLLKFHGWELSARCARVLRISTMLLKKGAARGLTPYDIGRILCRETVNRDSEIEDIVQEAEGHVLPGSSEVIFLETVSEIIDRHLDKKFA

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_06g0016270 OsKeNa_06g0016270.03 Chr06 17356110 17359020 + NAM
CDS seq

atgtcgtctgctgccattgccattagcccgatggtggaagagtttgctctcctgcccatctgcttcgacggcagccggtcgccccactgtttgtccgggtcacagctgcaggattcgattatcatctttcttgctgtgcctggtgccccaccgatgccaatgagtgtgctcggctcggagtccatcgcctcggtcaagctgcgcattcagcggttcaaggggttcgtggttaacaagcagaggcttgtgcttgatgggcacgagctggcaaggaacaactgccatgtgaaggattatgggcttgccgatggaaatgttctgcaccttgttatccgcttggctgatcttcgcttgattaacatcgagactaccagtggaaagaagtttcagttccaggtggaccagagccgcaatgtcaagtatctcaagagtaagctggcagtggagggagatgaggaccttggtgaggatcacaagcttgaatgtgatggcaaggagcttgaggaccaccagctgattgctgatattagcaagaaggatgatgctgtgatccatttattcatccgcaagccagcaaagttacggacacagcaagttgataaagacacggtggttacagttgtcactccgcaggagaaagagaaccttcaaaatgaagctcatgctgtgaaccctgctaaaccagctggtgctaggcctgctcttgttgaaccaattatcgttaaccacaaggtgaagctatcacttgaagtgatgagaatgattagctcagccatagctggtcttgagaatggatacttgccagtgatgtcagctgaaggttcagggggtgtttacttcatgcaagatgcatcaggagagaagaatattgcagtgtttaagcccagagatgaggaacctatggctaaaaacaacccaagagggcttccagtgtcgactgatggagaaggcatgaagagggggacacttgtaggggaaggtgcatttagggaagttgctgcttatattcttgaccatccaattggtgatcatgaatctgaagaacgtatcgggttctctggtgtgcctcccacagcattggtccggagcttacacagggggaagagcttcaagattggatcactgcagatgttcattcagaacaatggaagttgtgaggatatgggtccccgagcatttccagtgaaggaggtccacaaaatagcagtgttagatcttaggttagcaaacgctgatcgtcatgcagggaacattttagtgtgcaaggatgaagaaggtggcaattacaagttggttccaattgatcatggttactgcttgccagagaagtttgaagattgtacctttgagtggctgtactggccccaggctcgtgaaccattcagtgatgaaaccattgcatacatcaaatcactagacgctgaagaggacatcaagcttctcaagttccatgggtgggagctgtctgcaagatgtgctcgtgtcctgcgcatcagcaccatgcttttaaagaaaggtgcagcacgaggcctcacaccgtatgacatcgggcgtatactgtgcagggaaactgtgaatagagactctgagattgaggacatcgtccaggaagccgagggccatgttctcccagggtcaagtgaagtaatcttcttagaaaccgtatctgaaatcatagaccgtcacctcgacaagaagttcgcttag

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Protein seq

MSSAAIAISPMVEEFALLPICFDGSRSPHCLSGSQLQDSIIIFLAVPGAPPMPMSVLGSESIASVKLRIQRFKGFVVNKQRLVLDGHELARNNCHVKDYGLADGNVLHLVIRLADLRLINIETTSGKKFQFQVDQSRNVKYLKSKLAVEGDEDLGEDHKLECDGKELEDHQLIADISKKDDAVIHLFIRKPAKLRTQQVDKDTVVTVVTPQEKENLQNEAHAVNPAKPAGARPALVEPIIVNHKVKLSLEVMRMISSAIAGLENGYLPVMSAEGSGGVYFMQDASGEKNIAVFKPRDEEPMAKNNPRGLPVSTDGEGMKRGTLVGEGAFREVAAYILDHPIGDHESEERIGFSGVPPTALVRSLHRGKSFKIGSLQMFIQNNGSCEDMGPRAFPVKEVHKIAVLDLRLANADRHAGNILVCKDEEGGNYKLVPIDHGYCLPEKFEDCTFEWLYWPQAREPFSDETIAYIKSLDAEEDIKLLKFHGWELSARCARVLRISTMLLKKGAARGLTPYDIGRILCRETVNRDSEIEDIVQEAEGHVLPGSSEVIFLETVSEIIDRHLDKKFA

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr06 17356091 17356490 + OsKeNa_06g0016270.02 OsKeNa_06g0016270.02,OsKeNa_06g0016270.01 All
A5 Chr06 17356247 17356396 + OsKeNa_06g0016270.03 OsKeNa_06g0016270.01,OsKeNa_06g0016270.03 All

Expression

Leaf Root Panicle
FPKM 1.900298 31.529932 11.803541

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_06g0340600 RBH 21.642321 18.225737 27.789667
Nipponbare | IRGSP 1.0 | MSU LOC_Os06g23290 RBH 14.642928 11.974533 7.080567
Nipponbare | IRGSP 1.0 | RAP-db Os06g0340600 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_06g0016430 RBH 6.726702 116.987373 32.573929
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_06g0016400 RBH 15.419156 83.079987 41.819942
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_06g0016400 RBH 1.737411 1.732329 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_06g0016540 RBH 45.610970 87.886429 74.387085
Minghui 63 | MH63RS3 | HZAU OsMH63_06G0267500 RBH 54.607336 142.3926235 118.9454955
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_06g0016010 RBH 2.265629 4.141820 4.788577
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_06G0244700 RBH 57.011488 125.914051 58.0614205
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_06g0016390 RBH 2.447570 1.634082 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_06g0016360 RBH 6.131448 86.787209 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_06g0016040 RBH 40.531155 107.599434 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_06g0016720 RBH 6.348494 6.283409 7.715738
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_06g0016170 RBH 3.232024 33.582287 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_06G016170 RBH 5.319463 9.950089 15.120990
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_06g0016380 RBH 12.132844 81.810196 30.809267
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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