Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
LOC_Os06g23290		OGI:06046960 \| 16/16			Nipponbare \| IRGSP 1.0 \| MSU			Chr06:13601951-13604917		Homologues MicroCollinearity RGI-JBrowse RGAP Ricevarmap2
Gene Symbol		-
DNA seq		CAAACTTTGGAGTACAGTTAAAGAACAGCACCAGCAAAAACAGCACTAAATCAACATTTTATTTCGTCTCTCAGACAGTACCATGCTGATGATGCGCACGACCAACACACAACACATGCTTACATATTCACAAAATGTATGTAGGTAATGCACTTGAAGGTTTGAGATGCTACAAACAAATGAAATCATTTAGTCCATTGAAGAGTGGCTTGTCAACATACTTACACCAAACTGACTGGATACAGCTGAACAACTAGATCAGTTATTCTGGGTTTCTAAGCGAACTTCTTGTCGAGGTGACGGTCTATGATTTCAGATACGGTTTCTAAGAAGATTACTTCACTTGACCCTGGGAGAACATGGCCCTCGGCTTCCTGGACGATGTCCTCAATCTCAGAGTCTCTATTCACAGTTTCCCTGCACAGTATACGCCCGATGTCATACGGTGTGAGGCCTCGTGCTGCACCTTTCTTTAAAAGCATGGTGCTGATGCACAGGACACGAGCACATCTTGCAGACAGCTCCCACCCATGGAACTTGAGAAGCTTGATGTCCTCTTCAGCGTCTAGTGATTTGATGTATGCAATGGTTTCATCACTGAATGGTTCACGAGCCTGGGGCCAGTACAGCCACTCAAAGGTACAATCTTCAAACTGCGTCACAATGGAAAAAAAATTATCGTTAGTCTACCAGAATAAGTACTATCTCATGCAAGAAGAAAAGTGAGTGCTAGAGAGTAACGTGTACCTTCTCTGGCAAGCAGTAACCATGATCAATTGGAACCAACTTGTAATTGCCACCTTCTTCATCCTTGCACACTAAAATGTTCCCTGCATGACGATCAGCGTTTGCTAACCTAAGATCTAACACTGCTATTTTGTGGACCTCCTTCACTGGAAATGCTCGGGGACCCATATCCTCACAACTTCCATTGTTCTGAATGAACATCTGCAGTGATCCAATCTTGAAGCTCTTCCCCCTGTGTAAGCTCCGGACCAATGCTGTGGGAGGCACACCAGAGAACCCGATACGTTCTTCAGATTCATGATCACCAATTGGATGGTCAAGAATATAAGCAGCAACTTCCCTAAATGCACCTTCCCCTACAAGTGTCCCCCTCTTCATGCCTTCTCCATCAGTCGACACTGGAAGCCCTCTTGGGTTGTTTTTAGCCATAGGTTCCTCATCTCTGGGCTTAAACACTGCAATATTCTTCTCTCCTGATGCATCTTGCATGAAGTAAACACCCCCTGAACCTTCAGCTGACATCACTGGCAAGTATCCATTCTCAAGACCAGCTATGGCTGAGCTAATCATTCTCATCACTTCAAGTGATAGCTTCACCTTGTGGTTAACGATAATTGGTTCAACAAGAGCAGGCCTAGCACCAGCTGGTTTAGCAGGGTTCACAGCATGAGCTTCATTTTGAAGGTTCTCTTTCTCCTGCGGAGTGACAACTGTAACCACCGTGTCTTTATCAACTTGCTGTGTCCGTAACTTTGCTGGCTTGCGGATGAACAAATGGATCACAGCATCATCCTTCTTGCTAATATCAGCAATCAGCTGGTGGTCCTCAAGCTCCTTGCCATCACATTCAAGCTTGTGATCCTCACCAAGGTCCTCATCTCCCTCCACTGCCAGCTTACTCTTGAGATACTTGACATTGCGGCTCTGGTCCACCTGGAACTGAAACTTCTTTCCACTGGTAGTCTCGATGTTAATCAAGCGAAGATCAGCCAAGCGGATAACAAGGTGCAGAACATTTCCATCGGCAAGCCCATAATCCTTCACATGGCAGTTGTTCCTTGCCAGCTCGTGCCCATCAAGCACAAGCCTCTGCTTGTTAACCACGAACCCCTTGAACCGCTGAATGCGCAGCTTGACCGAGGCGATGGACTCCGAGCCGAGCACACTCATCGGCATCGGTGGGGCACCAGGCACAGCAAGAAAGATGATAATCGAATCCTGCAGCTGTGACCCGGACAAACAGTGGGGCGACCGGCTGCCGTCGAAGCAGATGGGCAGGAGAGCAAACTCTTCCACCATCGGGCTAATGGCAATGGCAGCAGACGACATCTTCACAGGAGGTCCTTAGGATGCCGAAGCTTCCTCAACTACTGCTACTATTTACACTAACCTAAAAATCAGATCCTTCACACTACGAATTAGAAGCCATGGAGAAGAAAGGGCAAGGGTTCCTTTCCTTCCTTAGAGGATGGAGGAAACCCTCTGCGATCGCGAGATAACCAGCGTGGTTACAATCCCATCTTGATCTCCAGGCACATCAAACCTGCACAAAATTCAGAGAGCCATTCGTTATTAACCACCGAAACATTCAACCGAAGGGGAGAAATTCCAGAGCATGAAGAGAAACGTACCAGACATGGTTAGATGAGGGGGAGAAGTGACGAAATATCTCGCCTTTGCCCACCAGTGATTGAATCCCCCACACGGAATCTACAAAGGAGAAATCATTCCGGATCGATCAGCCTCAGACCATCAAATCCACCCGATCCCCAGGGTAAATTCAGCTCAAATTAACACAAAAAACCAGAGAAATTGCTCACCAGAAGAGGGATTAATCAGGAAGGGCCCGAACCCCCTCCGATCCGGACGCCAACCGAGCCACAACCTCACCGATTCACCTCACTCCAATCAAACCCTGCAAGCACACCACCACACCACCACACAGATCAGAAAAACTCCCCACCAATCCAAATCCCAAGCCAACCGCCCCAAAAAAAAAAAGAAAAATAATCTCACAAGAATTCACAGGACAAATCAGCGGGGGATTCACCGCAAGAACCGACCAGAGGAGAGGAGGGGGGATACCCCGGAGAGGGGGGCGGGGCTAAATCCGGCGCGGCGCCTTGTTCTTCCTTGCTCCGAAGTTCACGCGAGATGGGGAAGCTTCGGTTTGGTTTTGGTTTGGGGAGAAAGAAATTCAGAGAGAGAGGGAGGGGAAAT More
CDS seq		ATGTCGTCTGCTGCCATTGCCATTAGCCCGATGGTGGAAGAGTTTGCTCTCCTGCCCATCTGCTTCGACGGCAGCCGGTCGCCCCACTGTTTGTCCGGGTCACAGCTGCAGGATTCGATTATCATCTTTCTTGCTGTGCCTGGTGCCCCACCGATGCCGATGAGTGTGCTCGGCTCGGAGTCCATCGCCTCGGTCAAGCTGCGCATTCAGCGGTTCAAGGGGTTCGTGGTTAACAAGCAGAGGCTTGTGCTTGATGGGCACGAGCTGGCAAGGAACAACTGCCATGTGAAGGATTATGGGCTTGCCGATGGAAATGTTCTGCACCTTGTTATCCGCTTGGCTGATCTTCGCTTGATTAACATCGAGACTACCAGTGGAAAGAAGTTTCAGTTCCAGGTGGACCAGAGCCGCAATGTCAAGTATCTCAAGAGTAAGCTGGCAGTGGAGGGAGATGAGGACCTTGGTGAGGATCACAAGCTTGAATGTGATGGCAAGGAGCTTGAGGACCACCAGCTGATTGCTGATATTAGCAAGAAGGATGATGCTGTGATCCATTTGTTCATCCGCAAGCCAGCAAAGTTACGGACACAGCAAGTTGATAAAGACACGGTGGTTACAGTTGTCACTCCGCAGGAGAAAGAGAACCTTCAAAATGAAGCTCATGCTGTGAACCCTGCTAAACCAGCTGGTGCTAGGCCTGCTCTTGTTGAACCAATTATCGTTAACCACAAGGTGAAGCTATCACTTGAAGTGATGAGAATGATTAGCTCAGCCATAGCTGGTCTTGAGAATGGATACTTGCCAGTGATGTCAGCTGAAGGTTCAGGGGGTGTTTACTTCATGCAAGATGCATCAGGAGAGAAGAATATTGCAGTGTTTAAGCCCAGAGATGAGGAACCTATGGCTAAAAACAACCCAAGAGGGCTTCCAGTGTCGACTGATGGAGAAGGCATGAAGAGGGGGACACTTGTAGGGGAAGGTGCATTTAGGGAAGTTGCTGCTTATATTCTTGACCATCCAATTGGTGATCATGAATCTGAAGAACGTATCGGGTTCTCTGGTGTGCCTCCCACAGCATTGGTCCGGAGCTTACACAGGGGGAAGAGCTTCAAGATTGGATCACTGCAGATGTTCATTCAGAACAATGGAAGTTGTGAGGATATGGGTCCCCGAGCATTTCCAGTGAAGGAGGTCCACAAAATAGCAGTGTTAGATCTTAGGTTAGCAAACGCTGATCGTCATGCAGGGAACATTTTAGTGTGCAAGGATGAAGAAGGTGGCAATTACAAGTTGGTTCCAATTGATCATGGTTACTGCTTGCCAGAGAAGTTTGAAGATTGTACCTTTGAGTGGCTGTACTGGCCCCAGGCTCGTGAACCATTCAGTGATGAAACCATTGCATACATCAAATCACTAGACGCTGAAGAGGACATCAAGCTTCTCAAGTTCCATGGGTGGGAGCTGTCTGCAAGATGTGCTCGTGTCCTGTGCATCAGCACCATGCTTTTAAAGAAAGGTGCAGCACGAGGCCTCACACCGTATGACATCGGGCGTATACTGTGCAGGGAAACTGTGAATAGAGACTCTGAGATTGAGGACATCGTCCAGGAAGCCGAGGGCCATGTTCTCCCAGGGTCAAGTGAAGTAATCTTCTTAGAAACCGTATCTGAAATCATAGACCGTCACCTCGACAAGAAGTTCGCTTAG More
Protein seq		MSSAAIAISPMVEEFALLPICFDGSRSPHCLSGSQLQDSIIIFLAVPGAPPMPMSVLGSESIASVKLRIQRFKGFVVNKQRLVLDGHELARNNCHVKDYGLADGNVLHLVIRLADLRLINIETTSGKKFQFQVDQSRNVKYLKSKLAVEGDEDLGEDHKLECDGKELEDHQLIADISKKDDAVIHLFIRKPAKLRTQQVDKDTVVTVVTPQEKENLQNEAHAVNPAKPAGARPALVEPIIVNHKVKLSLEVMRMISSAIAGLENGYLPVMSAEGSGGVYFMQDASGEKNIAVFKPRDEEPMAKNNPRGLPVSTDGEGMKRGTLVGEGAFREVAAYILDHPIGDHESEERIGFSGVPPTALVRSLHRGKSFKIGSLQMFIQNNGSCEDMGPRAFPVKEVHKIAVLDLRLANADRHAGNILVCKDEEGGNYKLVPIDHGYCLPEKFEDCTFEWLYWPQAREPFSDETIAYIKSLDAEEDIKLLKFHGWELSARCARVLCISTMLLKKGAARGLTPYDIGRILCRETVNRDSEIEDIVQEAEGHVLPGSSEVIFLETVSEIIDRHLDKKFA
Function		Phosphatidylinositol 4-kinase gamma 4 [UniProtKB/Swiss-Prot:Q6K881]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os06g23290	LOC_Os06g23290.1	Chr06	13601951	13604917	-	MSU_osa1r7
CDS seq	ATGTCGTCTGCTGCCATTGCCATTAGCCCGATGGTGGAAGAGTTTGCTCTCCTGCCCATCTGCTTCGACGGCAGCCGGTCGCCCCACTGTTTGTCCGGGTCACAGCTGCAGGATTCGATTATCATCTTTCTTGCTGTGCCTGGTGCCCCACCGATGCCGATGAGTGTGCTCGGCTCGGAGTCCATCGCCTCGGTCAAGCTGCGCATTCAGCGGTTCAAGGGGTTCGTGGTTAACAAGCAGAGGCTTGTGCTTGATGGGCACGAGCTGGCAAGGAACAACTGCCATGTGAAGGATTATGGGCTTGCCGATGGAAATGTTCTGCACCTTGTTATCCGCTTGGCTGATCTTCGCTTGATTAACATCGAGACTACCAGTGGAAAGAAGTTTCAGTTCCAGGTGGACCAGAGCCGCAATGTCAAGTATCTCAAGAGTAAGCTGGCAGTGGAGGGAGATGAGGACCTTGGTGAGGATCACAAGCTTGAATGTGATGGCAAGGAGCTTGAGGACCACCAGCTGATTGCTGATATTAGCAAGAAGGATGATGCTGTGATCCATTTGTTCATCCGCAAGCCAGCAAAGTTACGGACACAGCAAGTTGATAAAGACACGGTGGTTACAGTTGTCACTCCGCAGGAGAAAGAGAACCTTCAAAATGAAGCTCATGCTGTGAACCCTGCTAAACCAGCTGGTGCTAGGCCTGCTCTTGTTGAACCAATTATCGTTAACCACAAGGTGAAGCTATCACTTGAAGTGATGAGAATGATTAGCTCAGCCATAGCTGGTCTTGAGAATGGATACTTGCCAGTGATGTCAGCTGAAGGTTCAGGGGGTGTTTACTTCATGCAAGATGCATCAGGAGAGAAGAATATTGCAGTGTTTAAGCCCAGAGATGAGGAACCTATGGCTAAAAACAACCCAAGAGGGCTTCCAGTGTCGACTGATGGAGAAGGCATGAAGAGGGGGACACTTGTAGGGGAAGGTGCATTTAGGGAAGTTGCTGCTTATATTCTTGACCATCCAATTGGTGATCATGAATCTGAAGAACGTATCGGGTTCTCTGGTGTGCCTCCCACAGCATTGGTCCGGAGCTTACACAGGGGGAAGAGCTTCAAGATTGGATCACTGCAGATGTTCATTCAGAACAATGGAAGTTGTGAGGATATGGGTCCCCGAGCATTTCCAGTGAAGGAGGTCCACAAAATAGCAGTGTTAGATCTTAGGTTAGCAAACGCTGATCGTCATGCAGGGAACATTTTAGTGTGCAAGGATGAAGAAGGTGGCAATTACAAGTTGGTTCCAATTGATCATGGTTACTGCTTGCCAGAGAAGTTTGAAGATTGTACCTTTGAGTGGCTGTACTGGCCCCAGGCTCGTGAACCATTCAGTGATGAAACCATTGCATACATCAAATCACTAGACGCTGAAGAGGACATCAAGCTTCTCAAGTTCCATGGGTGGGAGCTGTCTGCAAGATGTGCTCGTGTCCTGTGCATCAGCACCATGCTTTTAAAGAAAGGTGCAGCACGAGGCCTCACACCGTATGACATCGGGCGTATACTGTGCAGGGAAACTGTGAATAGAGACTCTGAGATTGAGGACATCGTCCAGGAAGCCGAGGGCCATGTTCTCCCAGGGTCAAGTGAAGTAATCTTCTTAGAAACCGTATCTGAAATCATAGACCGTCACCTCGACAAGAAGTTCGCTTAG More
Protein seq	MSSAAIAISPMVEEFALLPICFDGSRSPHCLSGSQLQDSIIIFLAVPGAPPMPMSVLGSESIASVKLRIQRFKGFVVNKQRLVLDGHELARNNCHVKDYGLADGNVLHLVIRLADLRLINIETTSGKKFQFQVDQSRNVKYLKSKLAVEGDEDLGEDHKLECDGKELEDHQLIADISKKDDAVIHLFIRKPAKLRTQQVDKDTVVTVVTPQEKENLQNEAHAVNPAKPAGARPALVEPIIVNHKVKLSLEVMRMISSAIAGLENGYLPVMSAEGSGGVYFMQDASGEKNIAVFKPRDEEPMAKNNPRGLPVSTDGEGMKRGTLVGEGAFREVAAYILDHPIGDHESEERIGFSGVPPTALVRSLHRGKSFKIGSLQMFIQNNGSCEDMGPRAFPVKEVHKIAVLDLRLANADRHAGNILVCKDEEGGNYKLVPIDHGYCLPEKFEDCTFEWLYWPQAREPFSDETIAYIKSLDAEEDIKLLKFHGWELSARCARVLCISTMLLKKGAARGLTPYDIGRILCRETVNRDSEIEDIVQEAEGHVLPGSSEVIFLETVSEIIDRHLDKKFA More

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os06g23290	LOC_Os06g23290.2	Chr06	13601951	13604916	-	MSU_osa1r7
CDS seq	ATGTCGTCTGCTGCCATTGCCATTAGCCCGATGGTGGAAGAGTTTGCTCTCCTGCCCATCTGCTTCGACGGCAGCCGGTCGCCCCACTGTTTGTCCGGGTCACAGCTGCAGGATTCGATTATCATCTTTCTTGCTGTGCCTGGTGCCCCACCGATGCCGATGAGTGTGCTCGGCTCGGAGTCCATCGCCTCGGTCAAGCTGCGCATTCAGCGGTTCAAGGGGTTCGTGGTTAACAAGCAGAGGCTTGTGCTTGATGGGCACGAGCTGGCAAGGAACAACTGCCATGTGAAGGATTATGGGCTTGCCGATGGAAATGTTCTGCACCTTGTTATCCGCTTGGCTGATCTTCGCTTGATTAACATCGAGACTACCAGTGGAAAGAAGTTTCAGTTCCAGGTGGACCAGAGCCGCAATGTCAAGTATCTCAAGAGTAAGCTGGCAGTGGAGGGAGATGAGGACCTTGGTGAGGATCACAAGCTTGAATGTGATGGCAAGGAGCTTGAGGACCACCAGCTGATTGCTGATATTAGCAAGAAGGATGATGCTGTGATCCATTTGTTCATCCGCAAGCCAGCAAAGTTACGGACACAGCAAGTTGATAAAGACACGGTGGTTACAGTTGTCACTCCGCAGGAGAAAGAGAACCTTCAAAATGAAGCTCATGCTGTGAACCCTGCTAAACCAGCTGGTGCTAGGCCTGCTCTTGTTGAACCAATTATCGTTAACCACAAGGTGAAGCTATCACTTGAAGTGATGAGAATGATTAGCTCAGCCATAGCTGGTCTTGAGAATGGATACTTGCCAGTGATGTCAGCTGAAGGTTCAGGGGGTGTTTACTTCATGCAAGATGCATCAGGAGAGAAGAATATTGCAGTGTTTAAGCCCAGAGATGAGGAACCTATGGCTAAAAACAACCCAAGAGGGCTTCCAGTGTCGACTGATGGAGAAGGCATGAAGAGGGGGACACTTGTAGGGGAAGGTGCATTTAGGGAAGTTGCTGCTTATATTCTTGACCATCCAATTGGTGATCATGAATCTGAAGAACGTATCGGGTTCTCTGGTGTGCCTCCCACAGCATTGGTCCGGAGCTTACACAGGGGGAAGAGCTTCAAGATTGGATCACTGCAGATGTTCATTCAGAACAATGGAAGTTGTGAGGATATGGGTCCCCGAGCATTTCCAGTGAAGGAGGTCCACAAAATAGCAGTGTTAGATCTTAGGTTAGCAAACGCTGATCGTCATGCAGGGAACATTTTAGTGTGCAAGGATGAAGAAGGTGGCAATTACAAGTTGGTTCCAATTGATCATGGTTACTGCTTGCCAGAGAAGTTTGAAGATTGTACCTTTGAGTGGCTGTACTGGCCCCAGGCTCGTGAACCATTCAGTGATGAAACCATTGCATACATCAAATCACTAGACGCTGAAGAGGACATCAAGCTTCTCAAGTTCCATGGGTGGGAGCTGTCTGCAAGATGTGCTCGTGTCCTGTGCATCAGCACCATGCTTTTAAAGAAAGGTGCAGCACGAGGCCTCACACCGTATGACATCGGGCGTATACTGTGCAGGGAAACTGTGAATAGAGACTCTGAGATTGAGGACATCGTCCAGGAAGCCGAGGGCCATGTTCTCCCAGGGTCAAGTGAAGTAATCTTCTTAGAAACCGTATCTGAAATCATAGACCGTCACCTCGACAAGAAGTTCGCTTAG More
Protein seq	MSSAAIAISPMVEEFALLPICFDGSRSPHCLSGSQLQDSIIIFLAVPGAPPMPMSVLGSESIASVKLRIQRFKGFVVNKQRLVLDGHELARNNCHVKDYGLADGNVLHLVIRLADLRLINIETTSGKKFQFQVDQSRNVKYLKSKLAVEGDEDLGEDHKLECDGKELEDHQLIADISKKDDAVIHLFIRKPAKLRTQQVDKDTVVTVVTPQEKENLQNEAHAVNPAKPAGARPALVEPIIVNHKVKLSLEVMRMISSAIAGLENGYLPVMSAEGSGGVYFMQDASGEKNIAVFKPRDEEPMAKNNPRGLPVSTDGEGMKRGTLVGEGAFREVAAYILDHPIGDHESEERIGFSGVPPTALVRSLHRGKSFKIGSLQMFIQNNGSCEDMGPRAFPVKEVHKIAVLDLRLANADRHAGNILVCKDEEGGNYKLVPIDHGYCLPEKFEDCTFEWLYWPQAREPFSDETIAYIKSLDAEEDIKLLKFHGWELSARCARVLCISTMLLKKGAARGLTPYDIGRILCRETVNRDSEIEDIVQEAEGHVLPGSSEVIFLETVSEIIDRHLDKKFA More

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os06g23290	LOC_Os06g23290.3	Chr06	13601951	13604917	-	MSU_osa1r7
CDS seq	ATGTCGTCTGCTGCCATTGCCATTAGCCCGATGGTGGAAGAGTTTGCTCTCCTGCCCATCTGCTTCGACGGCAGCCGGTCGCCCCACTGTTTGTCCGGGTCACAGCTGCAGGATTCGATTATCATCTTTCTTGCTGTGCCTGGTGCCCCACCGATGCCGATGAGTGTGCTCGGCTCGGAGTCCATCGCCTCGGTCAAGCTGCGCATTCAGCGGTTCAAGGGGTTCGTGGTTAACAAGCAGAGGCTTGTGCTTGATGGGCACGAGCTGGCAAGGAACAACTGCCATGTGAAGGATTATGGGCTTGCCGATGGAAATGTTCTGCACCTTGTTATCCGCTTGGCTGATCTTCGCTTGATTAACATCGAGACTACCAGTGGAAAGAAGTTTCAGTTCCAGGTGGACCAGAGCCGCAATGTCAAGTATCTCAAGAGTAAGCTGGCAGTGGAGGGAGATGAGGACCTTGGTGAGGATCACAAGCTTGAATGTGATGGCAAGGAGCTTGAGGACCACCAGCTGATTGCTGATATTAGCAAGAAGGATGATGCTGTGATCCATTTGTTCATCCGCAAGCCAGCAAAGTTACGGACACAGCAAGTTGATAAAGACACGGTGGTTACAGTTGTCACTCCGCAGGAGAAAGAGAACCTTCAAAATGAAGCTCATGCTGTGAACCCTGCTAAACCAGCTGGTGCTAGGCCTGCTCTTGTTGAACCAATTATCGTTAACCACAAGGTGAAGCTATCACTTGAAGTGATGAGAATGATTAGCTCAGCCATAGCTGGTCTTGAGAATGGATACTTGCCAGTGATGTCAGCTGAAGGTTCAGGGGGTGTTTACTTCATGCAAGATGCATCAGGAGAGAAGAATATTGCAGTGTTTAAGCCCAGAGATGAGGAACCTATGGCTAAAAACAACCCAAGAGGGCTTCCAGTGTCGACTGATGGAGAAGGCATGAAGAGGGGGACACTTGTAGGGGAAGGTGCATTTAGGGAAGTTGCTGCTTATATTCTTGACCATCCAATTGGTGATCATGAATCTGAAGAACGTATCGGGTTCTCTGGTGTGCCTCCCACAGCATTGGTCCGGAGCTTACACAGGGGGAAGAGCTTCAAGATTGGATCACTGCAGATGTTCATTCAGAACAATGGAAGTTGTGAGGATATGGGTCCCCGAGCATTTCCAGTGAAGGAGGTCCACAAAATAGCAGTGTTAGATCTTAGGTTAGCAAACGCTGATCGTCATGCAGGGAACATTTTAGTGTGCAAGGATGAAGAAGGTGGCAATTACAAGTTGGTTCCAATTGATCATGGTTACTGCTTGCCAGAGAAGTTTGAAGATTGTACCTTTGAGTGGCTGTACTGGCCCCAGGCTCGTGAACCATTCAGTGATGAAACCATTGCATACATCAAATCACTAGACGCTGAAGAGGACATCAAGCTTCTCAAGTTCCATGGGTGGGAGCTGTCTGCAAGATGTGCTCGTGTCCTGTGCATCAGCACCATGCTTTTAAAGAAAGGTGCAGCACGAGGCCTCACACCGTATGACATCGGGCGTATACTGTGCAGGGAAACTGTGAATAGAGACTCTGAGATTGAGGACATCGTCCAGGAAGCCGAGGGCCATGTTCTCCCAGGGTCAAGTGAAGTAATCTTCTTAGAAACCGTATCTGAAATCATAGACCGTCACCTCGACAAGAAGTTCGCTTAG More
Protein seq	MSSAAIAISPMVEEFALLPICFDGSRSPHCLSGSQLQDSIIIFLAVPGAPPMPMSVLGSESIASVKLRIQRFKGFVVNKQRLVLDGHELARNNCHVKDYGLADGNVLHLVIRLADLRLINIETTSGKKFQFQVDQSRNVKYLKSKLAVEGDEDLGEDHKLECDGKELEDHQLIADISKKDDAVIHLFIRKPAKLRTQQVDKDTVVTVVTPQEKENLQNEAHAVNPAKPAGARPALVEPIIVNHKVKLSLEVMRMISSAIAGLENGYLPVMSAEGSGGVYFMQDASGEKNIAVFKPRDEEPMAKNNPRGLPVSTDGEGMKRGTLVGEGAFREVAAYILDHPIGDHESEERIGFSGVPPTALVRSLHRGKSFKIGSLQMFIQNNGSCEDMGPRAFPVKEVHKIAVLDLRLANADRHAGNILVCKDEEGGNYKLVPIDHGYCLPEKFEDCTFEWLYWPQAREPFSDETIAYIKSLDAEEDIKLLKFHGWELSARCARVLCISTMLLKKGAARGLTPYDIGRILCRETVNRDSEIEDIVQEAEGHVLPGSSEVIFLETVSEIIDRHLDKKFA More

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os06g23290	LOC_Os06g23290.4	Chr06	13601951	13604917	-	MSU_osa1r7
CDS seq	ATGTCGTCTGCTGCCATTGCCATTAGCCCGATGGTGGAAGAGTTTGCTCTCCTGCCCATCTGCTTCGACGGCAGCCGGTCGCCCCACTGTTTGTCCGGGTCACAGCTGCAGGATTCGATTATCATCTTTCTTGCTGTGCCTGGTGCCCCACCGATGCCGATGAGTGTGCTCGGCTCGGAGTCCATCGCCTCGGTCAAGCTGCGCATTCAGCGGTTCAAGGGGTTCGTGGTTAACAAGCAGAGGCTTGTGCTTGATGGGCACGAGCTGGCAAGGAACAACTGCCATGTGAAGGATTATGGGCTTGCCGATGGAAATGTTCTGCACCTTGTTATCCGCTTGGCTGATCTTCGCTTGATTAACATCGAGACTACCAGTGGAAAGAAGTTTCAGTTCCAGGTGGACCAGAGCCGCAATGTCAAGTATCTCAAGAGTAAGCTGGCAGTGGAGGGAGATGAGGACCTTGGTGAGGATCACAAGCTTGAATGTGATGGCAAGGAGCTTGAGGACCACCAGCTGATTGCTGATATTAGCAAGAAGGATGATGCTGTGATCCATTTGTTCATCCGCAAGCCAGCAAAGTTACGGACACAGCAAGTTGATAAAGACACGGTGGTTACAGTTGTCACTCCGCAGGAGAAAGAGAACCTTCAAAATGAAGCTCATGCTGTGAACCCTGCTAAACCAGCTGGTGCTAGGCCTGCTCTTGTTGAACCAATTATCGTTAACCACAAGGTGAAGCTATCACTTGAAGTGATGAGAATGATTAGCTCAGCCATAGCTGGTCTTGAGAATGGATACTTGCCAGTGATGTCAGCTGAAGGTTCAGGGGGTGTTTACTTCATGCAAGATGCATCAGGAGAGAAGAATATTGCAGTGTTTAAGCCCAGAGATGAGGAACCTATGGCTAAAAACAACCCAAGAGGGCTTCCAGTGTCGACTGATGGAGAAGGCATGAAGAGGGGGACACTTGTAGGGGAAGGTGCATTTAGGGAAGTTGCTGCTTATATTCTTGACCATCCAATTGGTGATCATGAATCTGAAGAACGTATCGGGTTCTCTGGTGTGCCTCCCACAGCATTGGTCCGGAGCTTACACAGGGGGAAGAGCTTCAAGATTGGATCACTGCAGATGTTCATTCAGAACAATGGAAGTTGTGAGGATATGGGTCCCCGAGCATTTCCAGTGAAGGAGGTCCACAAAATAGCAGTGTTAGATCTTAGGTTAGCAAACGCTGATCGTCATGCAGGGAACATTTTAGTGTGCAAGGATGAAGAAGGTGGCAATTACAAGTTGGTTCCAATTGATCATGGTTACTGCTTGCCAGAGAAGTTTGAAGATTGTACCTTTGAGTGGCTGTACTGGCCCCAGGCTCGTGAACCATTCAGTGATGAAACCATTGCATACATCAAATCACTAGACGCTGAAGAGGACATCAAGCTTCTCAAGTTCCATGGGTGGGAGCTGTCTGCAAGATGTGCTCGTGTCCTGTGCATCAGCACCATGCTTTTAAAGAAAGGTGCAGCACGAGGCCTCACACCGTATGACATCGGGCGTATACTGTGCAGGGAAACTGTGAATAGAGACTCTGAGATTGAGGACATCGTCCAGGAAGCCGAGGGCCATGTTCTCCCAGGGTCAAGTGAAGTAATCTTCTTAGAAACCGTATCTGAAATCATAGACCGTCACCTCGACAAGAAGTTCGCTTAG More
Protein seq	MSSAAIAISPMVEEFALLPICFDGSRSPHCLSGSQLQDSIIIFLAVPGAPPMPMSVLGSESIASVKLRIQRFKGFVVNKQRLVLDGHELARNNCHVKDYGLADGNVLHLVIRLADLRLINIETTSGKKFQFQVDQSRNVKYLKSKLAVEGDEDLGEDHKLECDGKELEDHQLIADISKKDDAVIHLFIRKPAKLRTQQVDKDTVVTVVTPQEKENLQNEAHAVNPAKPAGARPALVEPIIVNHKVKLSLEVMRMISSAIAGLENGYLPVMSAEGSGGVYFMQDASGEKNIAVFKPRDEEPMAKNNPRGLPVSTDGEGMKRGTLVGEGAFREVAAYILDHPIGDHESEERIGFSGVPPTALVRSLHRGKSFKIGSLQMFIQNNGSCEDMGPRAFPVKEVHKIAVLDLRLANADRHAGNILVCKDEEGGNYKLVPIDHGYCLPEKFEDCTFEWLYWPQAREPFSDETIAYIKSLDAEEDIKLLKFHGWELSARCARVLCISTMLLKKGAARGLTPYDIGRILCRETVNRDSEIEDIVQEAEGHVLPGSSEVIFLETVSEIIDRHLDKKFA More

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os06g23290	LOC_Os06g23290.5	Chr06	13601951	13604917	-	MSU_osa1r7
CDS seq	ATGTCGTCTGCTGCCATTGCCATTAGCCCGATGGTGGAAGAGTTTGCTCTCCTGCCCATCTGCTTCGACGGCAGCCGGTCGCCCCACTGTTTGTCCGGGTCACAGCTGCAGGATTCGATTATCATCTTTCTTGCTGTGCCTGGTGCCCCACCGATGCCGATGAGTGTGCTCGGCTCGGAGTCCATCGCCTCGGTCAAGCTGCGCATTCAGCGGTTCAAGGGGTTCGTGGTTAACAAGCAGAGGCTTGTGCTTGATGGGCACGAGCTGGCAAGGAACAACTGCCATGTGAAGGATTATGGGCTTGCCGATGGAAATGTTCTGCACCTTGTTATCCGCTTGGCTGATCTTCGCTTGATTAACATCGAGACTACCAGTGGAAAGAAGTTTCAGTTCCAGGTGGACCAGAGCCGCAATGTCAAGTATCTCAAGAGTAAGCTGGCAGTGGAGGGAGATGAGGACCTTGGTGAGGATCACAAGCTTGAATGTGATGGCAAGGAGCTTGAGGACCACCAGCTGATTGCTGATATTAGCAAGAAGGATGATGCTGTGATCCATTTGTTCATCCGCAAGCCAGCAAAGTTACGGACACAGCAAGTTGATAAAGACACGGTGGTTACAGTTGTCACTCCGCAGGAGAAAGAGAACCTTCAAAATGAAGCTCATGCTGTGAACCCTGCTAAACCAGCTGGTGCTAGGCCTGCTCTTGTTGAACCAATTATCGTTAACCACAAGGTGAAGCTATCACTTGAAGTGATGAGAATGATTAGCTCAGCCATAGCTGGTCTTGAGAATGGATACTTGCCAGTGATGTCAGCTGAAGGTTCAGGGGGTGTTTACTTCATGCAAGATGCATCAGGAGAGAAGAATATTGCAGTGTTTAAGCCCAGAGATGAGGAACCTATGGCTAAAAACAACCCAAGAGGGCTTCCAGTGTCGACTGATGGAGAAGGCATGAAGAGGGGGACACTTGTAGGGGAAGGTGCATTTAGGGAAGTTGCTGCTTATATTCTTGACCATCCAATTGGTGATCATGAATCTGAAGAACGTATCGGGTTCTCTGGTGTGCCTCCCACAGCATTGGTCCGGAGCTTACACAGGGGGAAGAGCTTCAAGATTGGATCACTGCAGATGTTCATTCAGAACAATGGAAGTTGTGAGGATATGGGTCCCCGAGCATTTCCAGTGAAGGAGGTCCACAAAATAGCAGTGTTAGATCTTAGGTTAGCAAACGCTGATCGTCATGCAGGGAACATTTTAGTGTGCAAGGATGAAGAAGGTGGCAATTACAAGTTGGTTCCAATTGATCATGGTTACTGCTTGCCAGAGAAGTTTGAAGATTGTACCTTTGAGTGGCTGTACTGGCCCCAGGCTCGTGAACCATTCAGTGATGAAACCATTGCATACATCAAATCACTAGACGCTGAAGAGGACATCAAGCTTCTCAAGTTCCATGGGTGGGAGCTGTCTGCAAGATGTGCTCGTGTCCTGTGCATCAGCACCATGCTTTTAAAGAAAGGTGCAGCACGAGGCCTCACACCGTATGACATCGGGCGTATACTGTGCAGGGAAACTGTGAATAGAGACTCTGAGATTGAGGACATCGTCCAGGAAGCCGAGGGCCATGTTCTCCCAGGGTCAAGTGAAGTAATCTTCTTAGAAACCGTATCTGAAATCATAGACCGTCACCTCGACAAGAAGTTCGCTTAG More
Protein seq	MSSAAIAISPMVEEFALLPICFDGSRSPHCLSGSQLQDSIIIFLAVPGAPPMPMSVLGSESIASVKLRIQRFKGFVVNKQRLVLDGHELARNNCHVKDYGLADGNVLHLVIRLADLRLINIETTSGKKFQFQVDQSRNVKYLKSKLAVEGDEDLGEDHKLECDGKELEDHQLIADISKKDDAVIHLFIRKPAKLRTQQVDKDTVVTVVTPQEKENLQNEAHAVNPAKPAGARPALVEPIIVNHKVKLSLEVMRMISSAIAGLENGYLPVMSAEGSGGVYFMQDASGEKNIAVFKPRDEEPMAKNNPRGLPVSTDGEGMKRGTLVGEGAFREVAAYILDHPIGDHESEERIGFSGVPPTALVRSLHRGKSFKIGSLQMFIQNNGSCEDMGPRAFPVKEVHKIAVLDLRLANADRHAGNILVCKDEEGGNYKLVPIDHGYCLPEKFEDCTFEWLYWPQAREPFSDETIAYIKSLDAEEDIKLLKFHGWELSARCARVLCISTMLLKKGAARGLTPYDIGRILCRETVNRDSEIEDIVQEAEGHVLPGSSEVIFLETVSEIIDRHLDKKFA More

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os06g23290	LOC_Os06g23290.6	Chr06	13601951	13604917	-	MSU_osa1r7
CDS seq	ATGTCGTCTGCTGCCATTGCCATTAGCCCGATGGTGGAAGAGTTTGCTCTCCTGCCCATCTGCTTCGACGGCAGCCGGTCGCCCCACTGTTTGTCCGGGTCACAGCTGCAGGATTCGATTATCATCTTTCTTGCTGTGCCTGGTGCCCCACCGATGCCGATGAGTGTGCTCGGCTCGGAGTCCATCGCCTCGGTCAAGCTGCGCATTCAGCGGTTCAAGGGGTTCGTGGTTAACAAGCAGAGGCTTGTGCTTGATGGGCACGAGCTGGCAAGGAACAACTGCCATGTGAAGGATTATGGGCTTGCCGATGGAAATGTTCTGCACCTTGTTATCCGCTTGGCTGATCTTCGCTTGATTAACATCGAGACTACCAGTGGAAAGAAGTTTCAGTTCCAGGTGGACCAGAGCCGCAATGTCAAGTATCTCAAGAGTAAGCTGGCAGTGGAGGGAGATGAGGACCTTGGTGAGGATCACAAGCTTGAATGTGATGGCAAGGAGCTTGAGGACCACCAGCTGATTGCTGATATTAGCAAGAAGGATGATGCTGTGATCCATTTGTTCATCCGCAAGCCAGCAAAGTTACGGACACAGCAAGTTGATAAAGACACGGTGGTTACAGTTGTCACTCCGCAGGAGAAAGAGAACCTTCAAAATGAAGCTCATGCTGTGAACCCTGCTAAACCAGCTGGTGCTAGGCCTGCTCTTGTTGAACCAATTATCGTTAACCACAAGGTGAAGCTATCACTTGAAGTGATGAGAATGATTAGCTCAGCCATAGCTGGTCTTGAGAATGGATACTTGCCAGTGATGTCAGCTGAAGGTTCAGGGGGTGTTTACTTCATGCAAGATGCATCAGGAGAGAAGAATATTGCAGTGTTTAAGCCCAGAGATGAGGAACCTATGGCTAAAAACAACCCAAGAGGGCTTCCAGTGTCGACTGATGGAGAAGGCATGAAGAGGGGGACACTTGTAGGGGAAGGTGCATTTAGGGAAGTTGCTGCTTATATTCTTGACCATCCAATTGGTGATCATGAATCTGAAGAACGTATCGGGTTCTCTGGTGTGCCTCCCACAGCATTGGTCCGGAGCTTACACAGGGGGAAGAGCTTCAAGATTGGATCACTGCAGATGTTCATTCAGAACAATGGAAGTTGTGAGGATATGGGTCCCCGAGCATTTCCAGTGAAGGAGGTCCACAAAATAGCAGTGTTAGATCTTAGGTTAGCAAACGCTGATCGTCATGCAGGGAACATTTTAGTGTGCAAGGATGAAGAAGTTCGCTTAGAAACCCAGAATAACTGA More
Protein seq	MSSAAIAISPMVEEFALLPICFDGSRSPHCLSGSQLQDSIIIFLAVPGAPPMPMSVLGSESIASVKLRIQRFKGFVVNKQRLVLDGHELARNNCHVKDYGLADGNVLHLVIRLADLRLINIETTSGKKFQFQVDQSRNVKYLKSKLAVEGDEDLGEDHKLECDGKELEDHQLIADISKKDDAVIHLFIRKPAKLRTQQVDKDTVVTVVTPQEKENLQNEAHAVNPAKPAGARPALVEPIIVNHKVKLSLEVMRMISSAIAGLENGYLPVMSAEGSGGVYFMQDASGEKNIAVFKPRDEEPMAKNNPRGLPVSTDGEGMKRGTLVGEGAFREVAAYILDHPIGDHESEERIGFSGVPPTALVRSLHRGKSFKIGSLQMFIQNNGSCEDMGPRAFPVKEVHKIAVLDLRLANADRHAGNILVCKDEEVRLETQNN More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	14.642928	11.974533	7.080567

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_06g0340600	RBH	21.642321	18.225737	27.789667
Nipponbare \| IRGSP 1.0 \| MSU	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| RAP-db	Os06g0340600	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_06g0016430	RBH	6.726702	116.987373	32.573929
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_06g0016270	RBH	1.900298	31.529932	11.803541
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_06g0016400	RBH	15.419156	83.079987	41.819942
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_06g0016400	RBH	1.737411	1.732329	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_06g0016540	RBH	45.610970	87.886429	74.387085
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_06G0267500	RBH	54.607336	142.3926235	118.9454955
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_06g0016010	RBH	2.265629	4.141820	4.788577
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_06G0244700	RBH	57.011488	125.914051	58.0614205
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_06g0016390	RBH	2.447570	1.634082	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_06g0016360	RBH	6.131448	86.787209	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_06g0016040	RBH	40.531155	107.599434	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_06g0016720	RBH	6.348494	6.283409	7.715738
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_06g0016170	RBH	3.232024	33.582287	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_06G016170	RBH	5.319463	9.950089	15.120990
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_06g0016380	RBH	12.132844	81.810196	30.809267

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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