Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_06g0003620 | OGI:06007290 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr06:2606391-2608957 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aagcagccacagtcgtcagtgcctgccctgttacctgttcgatcctcctctcgattcccttgagagaagccaaggaggagcaggagagcggccggccatggagggagaggggattgggaggagaggccttccttcactgctcggTtcctcttccagcgaaagcggcggaatcgggcaagaacacattgcctctgacatcacgcaggttgagtgagctcttcgtcttcccctgctctttccctttcctttccttttcttttctttttttttggattaaacgtctccttcgtcttagttgctggcaatttggaactgaaagttttttattctttaagatagccaatcatcacactctccgttgagattaatggtggatttctttgacgagttgttcagctcataggatggacgccactggtcgagctgaagcgaatcgccagcaaggacggaatagatgcccggatcgtcggcaaggtcgaggcctatcagcccctctgctccgtcaaggatcgcagcgctttgaggttcttgttgaattatccttatattcatagactcagttttcttattaggaatcctagctaatatgattggacagagtgaggtttgatgcagttaagaCTGCAAGCTTCAGGAAGCTATTTTTTTAGTACTAGTTATTGTCTAAAAATATCTGTTTTACTATTTGGTTGTAGTTTATTATGAGAAGGCAGAAAATTCAAGTAAAAATCTTGCACTCTGAATTCATCCGAGTACTTGTCTTGCAACTTGCAGAAGGCTCATTTCCTGGTCAAAATATTTAGCAGAAGCTTATGAAATTGTGATGATTTTTTTTTCTAGAATCTGATTCCTTGTTTTGCTGTTCAGAATGATCGAGGATGCAGAAGAGAAAGGGCTGATTACTCCTGGTGTCACAACTCTAGTCGAGCCGACGAGTGGCAATCTGGGTTTAGGATTGGTGCTTGTTGCTCTTCGCAAAGGTTACAGGTTCGTTGCAGTTATGCCGGGCCAGTATTCGTTTGATAAGCAGATCTTGCTGAAATACATGGGAGCTGAATTGTTTCTATCAGGTAAAAAAATAAGAAGCAGGAAGTTGTAGCATCAATTTGTTTGCTTCCTTGTTTCATGGAGAAAAAAAAACAACTCTCTTGCTTTCTTCAGCATAATGTCAGTGAAATGAAaaaattcagtggaactgttctgtttaccttctttctttggtgtaaccatatggcagatccaacactcgggtttcaaggcttagtcgacaaggtcgaacagctcaagaaagaattacccaatgtgcacgttcttaatcaattctcaaatccagcaaatcaggaggcacacatgagattgactggtactgtctcaagatgacttgacaaatggtgttttaatttcagttAAaaaaatatgatctctttcgttaagtattaagatagtaaggctcccctttaacctttttcgttgcaacttgactgttaaaaacatgtactgtgttcttgaaacttggttgttagagatgtatcctctatttctttaagtatgatagtgctgtggttgcgttttcgatgtgtcccattcaacagttatttttcttcttttctcctttatggacaaggtcataaactggcgtatatttattttcctattgcaggacctgagatttggaaggatactgctggcaaggtagacatatttgttaccggttcgggctcaggaggtacggtatctggcgttggaaagtatctcaagctgcaaaatccagcggtgaagatcatttgtgtggagcctgcagagagcccagtcatttcaggtaaactataacatattatctggtatcacaaattatagagatccaactttgtttggataacatatcatgcggtaacacacatcgatatcgcactgcgacaccagtaacatagttttccagtgaccctgacAaactgttgcctgtttgtactgtttaggtggggagccaggtaaacataaaattcagggaatagggccaggactcatacctgatatgttggacacctcggtcatcgatgaagtcgtcacggtaaacactgatgaagcaatggtgaatgcaaggaggctggcaatggaagagggcctccttatgggcatttcttctggggcaaacctggcagcttgcttgaaggttcaaaatctcctagcaactcatctgtctgaatgtttattccttttcttatctctagtaatcttctcctatcgaaaatttttgcacatcctttcctctaataacattgaaatctcaaatgcatatttaggtcgcgtcgagagaggaaaacaaggggaagatgattgtcaccatgttcccaagcgggggtgagaggtacatgaactctgacctctttgcagctgtgagagaggaatgcaatgccatgacattttaatctcactggttgttcagaagaatcaagaacagttatgtgtaaaactataggagggtaacttgtaccacaatgtacacatagcacgatcttgcaaagggatttatcggcaaggagccaaagaatttgtacgaattgtatatt
More
|
||||||||||
| CDS seq | atggagggagaggggattgggaggagaggccttccttcactgctcggTtcctcttccagcgaaagcggcggaatcgggcaagaacacattgcctctgacatcacgcagctcataggatggacgccactggtcgagctgaagcgaatcgccagcaaggacggaatagatgcccggatcgtcggcaaggtcgaggcctatcagcccctctgctccgtcaaggatcgcagcgctttgagAATGATCGAGGATGCAGAAGAGAAAGGGCTGATTACTCCTGGTGTCACAACTCTAGTCGAGCCGACGAGTGGCAATCTGGGTTTAGGATTGGTGCTTGTTGCTCTTCGCAAAGGTTACAGGTTCGTTGCAGTTATGCCGGGCCAGTATTCGTTTGATAAGCAGATCTTGCTGAAATACATGGGAGCTGAATTGTTTCTATCAGatccaacactcgggtttcaaggcttagtcgacaaggtcgaacagctcaagaaagaattacccaatgtgcacgttcttaatcaattctcaaatccagcaaatcaggaggcacacatgagattgactggacctgagatttggaaggatactgctggcaaggtagacatatttgttaccggttcgggctcaggaggtacggtatctggcgttggaaagtatctcaagctgcaaaatccagcggtgaagatcatttgtgtggagcctgcagagagcccagtcatttcaggtggggagccaggtaaacataaaattcagggaatagggccaggactcatacctgatatgttggacacctcggtcatcgatgaagtcgtcacggtaaacactgatgaagcaatggtgaatgcaaggaggctggcaatggaagagggcctccttatgggcatttcttctggggcaaacctggcagcttgcttgaaggtcgcgtcgagagaggaaaacaaggggaagatgattgtcaccatgttcccaagcgggggtgagaggtacatgaactctgacctctttgcagctgtgagagaggaatgcaatgccatgacattttaa
More
|
||||||||||
| Protein seq | MEGEGIGRRGLPSLLGSSSSESGGIGQEHIASDITQLIGWTPLVELKRIASKDGIDARIVGKVEAYQPLCSVKDRSALRMIEDAEEKGLITPGVTTLVEPTSGNLGLGLVLVALRKGYRFVAVMPGQYSFDKQILLKYMGAELFLSDPTLGFQGLVDKVEQLKKELPNVHVLNQFSNPANQEAHMRLTGPEIWKDTAGKVDIFVTGSGSGGTVSGVGKYLKLQNPAVKIICVEPAESPVISGGEPGKHKIQGIGPGLIPDMLDTSVIDEVVTVNTDEAMVNARRLAMEEGLLMGISSGANLAACLKVASREENKGKMIVTMFPSGGERYMNSDLFAAVREECNAMTF |
||||||||||
| Function | Cysteine synthase, chloroplastic/chromoplastic [UniProtKB/Swiss-Prot:O81155] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0003620 | OsKeNa_06g0003620.01 | Chr06 | 2606391 | 2608957 | + | NAM | ||
| CDS seq | atggagggagaggggattgggaggagaggccttccttcactgctcggTtcctcttccagcgaaagcggcggaatcgggcaagaacacattgcctctgacatcacgcagctcataggatggacgccactggtcgagctgaagcgaatcgccagcaaggacggaatagatgcccggatcgtcggcaaggtcgaggcctatcagcccctctgctccgtcaaggatcgcagcgctttgagAATGATCGAGGATGCAGAAGAGAAAGGGCTGATTACTCCTGGTGTCACAACTCTAGTCGAGCCGACGAGTGGCAATCTGGGTTTAGGATTGGTGCTTGTTGCTCTTCGCAAAGGTTACAGGTTCGTTGCAGTTATGCCGGGCCAGTATTCGTTTGATAAGCAGATCTTGCTGAAATACATGGGAGCTGAATTGTTTCTATCAGatccaacactcgggtttcaaggcttagtcgacaaggtcgaacagctcaagaaagaattacccaatgtgcacgttcttaatcaattctcaaatccagcaaatcaggaggcacacatgagattgactggacctgagatttggaaggatactgctggcaaggtagacatatttgttaccggttcgggctcaggaggtacggtatctggcgttggaaagtatctcaagctgcaaaatccagcggtgaagatcatttgtgtggagcctgcagagagcccagtcatttcaggtggggagccaggtaaacataaaattcagggaatagggccaggactcatacctgatatgttggacacctcggtcatcgatgaagtcgtcacggtaaacactgatgaagcaatggtgaatgcaaggaggctggcaatggaagagggcctccttatgggcatttcttctggggcaaacctggcagcttgcttgaaggtcgcgtcgagagaggaaaacaaggggaagatgattgtcaccatgttcccaagcgggggtgagaggtacatgaactctgacctctttgcagctgtgagagaggaatgcaatgccatgacattttaa
More
|
|||||||
| Protein seq | MEGEGIGRRGLPSLLGSSSSESGGIGQEHIASDITQLIGWTPLVELKRIASKDGIDARIVGKVEAYQPLCSVKDRSALRMIEDAEEKGLITPGVTTLVEPTSGNLGLGLVLVALRKGYRFVAVMPGQYSFDKQILLKYMGAELFLSDPTLGFQGLVDKVEQLKKELPNVHVLNQFSNPANQEAHMRLTGPEIWKDTAGKVDIFVTGSGSGGTVSGVGKYLKLQNPAVKIICVEPAESPVISGGEPGKHKIQGIGPGLIPDMLDTSVIDEVVTVNTDEAMVNARRLAMEEGLLMGISSGANLAACLKVASREENKGKMIVTMFPSGGERYMNSDLFAAVREECNAMTF
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.747222 | 0.838849 | 5.048935 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0149900 | RBH | 4.948364 | 3.906482 | 3.922866 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g05700 | RBH | 3.331464 | 2.618793 | 1.005359 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0149900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0003740 | RBH | 2.344735 | 67.510368 | 4.771668 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0003610 | RBH | 0.0 | 5.146124 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0019690 | RBH | 5.986929 | 6.079491 | 15.584403 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0019460 | RBH | 0.845020 | 0.063212 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0003570 | RBH | 0.0 | 25.480967 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0042400 | RBH | 8.479546 | 10.622586 | 7.4648705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0003510 | SBH | 0.0 | 2.754271 | 1.886929 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0044500 | SBH | 6.684855 | 8.7087995 | 11.309374 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0019810 | RBH | 0.301598 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0003550 | RBH | 2.059073 | 19.367935 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0003620 | SBH | 0.000000 | 37.794659 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0003590 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0003430 | RBH | 0.438516 | 4.201398 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G003440 | RBH | 0.480306 | 0.000000 | 2.170643 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0019670 | SBH | 3.447290 | 1.319442 | 5.884802 |
