Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0006860 | OGI:05017600 | 2/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:6332474-6332899 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctccctctttagtgagattatatgagcaaatgcctaaaccaaaacacgtcattgctatgggagcttgtactattactggtggaatgttcagtacggattcctatagtactgttcgaggagttgataagttaattcctgtggacgtctacttgccgggttgcccacctaaaccagaggctgttatagatgccctaacaaaacttcgtaagaagatatcgcgagaaatagttgaggatcgaactctatctcaaaagaaaaatcgatgttatactaccagccacaagctttatgttcggcgcagttctaatactggaacttatgagcaagaattgctctatcaatcaccatctactttagacatatcttctgaaacttttttcaaatccaaaagtccagtatcttcctacAaattagtgaattag
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| CDS seq | atggctccctctttagtgagattatatgagcaaatgcctaaaccaaaacacgtcattgctatgggagcttgtactattactggtggaatgttcagtacggattcctatagtactgttcgaggagttgataagttaattcctgtggacgtctacttgccgggttgcccacctaaaccagaggctgttatagatgccctaacaaaacttcgtaagaagatatcgcgagaaatagttgaggatcgaactctatctcaaaagaaaaatcgatgttatactaccagccacaagctttatgttcggcgcagttctaatactggaacttatgagcaagaattgctctatcaatcaccatctactttagacatatcttctgaaacttttttcaaatccaaaagtccagtatcttcctacAaattagtgaattag
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| Protein seq | MAPSLVRLYEQMPKPKHVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLRKKISREIVEDRTLSQKKNRCYTTSHKLYVRRSSNTGTYEQELLYQSPSTLDISSETFFKSKSPVSSYKLVN |
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| Function | NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [UniProtKB/Swiss-Prot:P0C343] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0006860 | OsKeNa_05g0006860.01 | Chr05 | 6332474 | 6332899 | + | NAM | ||
| CDS seq | atggctccctctttagtgagattatatgagcaaatgcctaaaccaaaacacgtcattgctatgggagcttgtactattactggtggaatgttcagtacggattcctatagtactgttcgaggagttgataagttaattcctgtggacgtctacttgccgggttgcccacctaaaccagaggctgttatagatgccctaacaaaacttcgtaagaagatatcgcgagaaatagttgaggatcgaactctatctcaaaagaaaaatcgatgttatactaccagccacaagctttatgttcggcgcagttctaatactggaacttatgagcaagaattgctctatcaatcaccatctactttagacatatcttctgaaacttttttcaaatccaaaagtccagtatcttcctacAaattagtgaattag
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| Protein seq | MAPSLVRLYEQMPKPKHVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLRKKISREIVEDRTLSQKKNRCYTTSHKLYVRRSSNTGTYEQELLYQSPSTLDISSETFFKSKSPVSSYKLVN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.806807 | 0.714974 | 2.832764 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0533700 | SBH | 9.426044 | 9.596715 | 19.875496 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g58022 | SBH | 96.941048 | 98.175362 | 16.937952 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0533700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0006810 | RBH | 3.078001 | 0.428342 | 4.502482 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035990 | SBH | 75.699196 | 3.828083 | 65.759842 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0024600 | SBH | 4.232586 | 48.860863 | 21.193615 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0024620 | SBH | 0.675945 | 0.716974 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0024650 | SBH | 22.436806 | 25.028406 | 37.560738 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0024230 | SBH | 0.642375 | 1.117801 | 3.678556 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0171200 | SBH | 1118.9926145 | 27.0840055 | 49.746124 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0024440 | SBH | 0.866790 | 0.532695 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024310 | SBH | 4.383806 | 20.167482 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0024500 | SBH | 15.743811 | 25.943569 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0024500 | SBH | 2.091712 | 2.439120 | 2.308819 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0024560 | SBH | 0.720544 | 7.656787 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G023990 | SBH | 0.955658 | 1.950465 | 4.835283 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0024440 | SBH | 3.136357 | 55.017288 | 25.394604 |
