Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os05g0533700 | OGI:05071620 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr05:26494551-26497193 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTCTCCTCCCCCTCCCCCCTCTCGCCTCGCCGACCTCTCCACCTCCCCGGCGACTCGGACTCGTCGAAGCCGCGCTCGCCTACGACCACCCATGGCGCTCCTCCCCCGCGCGGCGCGGCTGGCGGCCCTCTCCGCGCCGCGCGCCTACTCGTCCGCCACGGCGGCGGCGGCGGGCGCGGGTGGCTCCGCGTCGCCCGCGCCATACGGCGGGGCGCCGCCGCCGGCCGCGAACTCCAAGGCGGCGGAGTTCGTGATCTCCAAGGTGGACGACCTGATGAACTGGGCGCGCCGGGGCTCGATCTGGCCCATGACGTTCGGGCTCGCCTGCTGCGCCGTGGAGATGATGCACACGGGCGCCTCCCGCTACGACTTCGACCGGTTCGGCGTCATCTTCCGCCCCTCCCCGCGCCAGTCCGACTGCATGATCGTCGCCGGCACGCTCACCAACAAGATGGCCCCCGCGCTCCGCAAGTCCGTACACTTGCGCCCTTTACCTTGCGTTCTTCTTTACATATAACCATCAAATTTGTGATTTATTTCGTATCGTCTCTGAGAGAAGAGTAGCAATTTTCTGTTAGGATGCTCTATTTTGCACTTTGAATTGGTTGGTGATGCTGCTTATATAGACTTCGGTAGAGGAGGGCGATTGGATTGGGGATTTTTTTTTTGTCATGTCAAGTTGCATACGATGTTTAATACTTCATTGTGCAGATTCTTTTTTGCCGGGTCGGCCGAACGAGGCCGACCAATTTCATTAAGAATGATTCTGTGCAGATCAATTTTTTTGCAGATTCTTTTTTTTATCCTTATAGGCGTCAATCCCTTGCGTGTTCCTCATAGGAGTAGATAAATTTGCGCTTAGTCTGAGCTTCCCATGTGTTCACAGCTTCGGTTTTGTATGGCATATGCCGTTGAACTATTTTTCCTCTTAGATTATATAGAGAATTGTATACTGGTTTAGCATGCGTTTGTAAATCAGAGGCACGTGCATTTTTTAGTGTCAGGAATAGAACAGTGTCGTGCTTGTTCAAATATCATAAGGGTTCATTGAATAGAATAATGGTTTTCCATATCAAAACATGAGCCATGTGTCTTGTGAACATGGTTGATGTAAGTACAACTGCTAAATATGCATTCATATCCACTTCTGTTAGTTGAAAGTAGTTAAGTTTTGTACTTAAAGAGTGATTTCCCTTCATTGTTTCTTTTATTTGTAGCTATGTAGTACCAATATTAGAATTGGTACTGTTTCTAATGCATTATTAGGACTTAGGATATGGAGAGTGCAATTCGTTTAAATACATTTTGAATAAAATTCATAGGTACTTCGATGAGTTTAAACACCTCATGAATAAAATTCATAGGTACACAGTACAATAATATTTTGTGTGCTTTATGTGTTACATTCCAACTTTCTATGCTGAAATAAAAACATGTCCATTTGCTTACTCAGAGAATCCCATGAAAGCAACAAATCTAAATGTATGCATCTTGTAGAAGAAAGATTGCTGGTTCCTTAGTGGAGTATGGTCACATACTTTAATTAATTGTAGTACTTCGTCCAAAAAAAACCCTTCAATTGTAGTACCTTTGCAAAATGTATGTATATGGTTATCCTAGGGAGTATAGCTATTTTTCTTATAGGAATTTGGTTTAACCTCTGCAAGTGTGCCTATATGGTTACCCTACGGAGTAAACCTATTTTCTTATGAGAATTTGGTTCTGATTGCCGACATGTTTATTGCTTTTTGAAAGAACAGTGTTTTTTGTGTTGATGATCTCATGGTTCTCAAATCTCAATGTGCGTGTATTATGGGAATCATAAGGAATAAGGACCAACAGTAAAAAACATAATATTGGTTGGAGACCTTTAAAACATGCGTACATGTAATTTTTATGTGAACTACTAACTGACAGACACCTGTGTAAACTTGGTGACCTTCTCCTTAGTGGTTGTCTTTTATTCACTACCAGCTCAATACCGATAGTCGCACAGCTATAGTTTGCAATGTTGCTGACATTTGTAGCTGTCTGTTGTTCTCTGCAGGGTTTACGATCAGATGCCAGAACCTCGATGGGTTATTTCAATGGGCAGCTGTGCCAACGGTGGTGGATACTACCACTACTCCTACTCCGTTGTGCGCGGATGCGACAGGATTGTTCCCGTGGACATCTACGTCCCTGGATGCCCTCCAACTGCTGAAGCTCTACTGTATGGCGTCCTGCAGTTGCAGAAGAAGATCAACAGGCGCAGGGATTTCCTTCACTGGTGGAACAAGTGAACCAGCACTTCTCTGCTTTCCTATCTGCTACGAATACGATCCTGTCAAAATGTTATCGAGCTTCTGTGTTAAATAAAGGAAAGCGTGTGCTTTCCGATCATCAAACTCTCTGTAGTAGATGCAGTGATAGTGAGCTCCTGGCTACCTTGATCACCGTTCATGGACAAAAAAACAATTGGTGATGCTGTTGCGGTGTTGCTGCTTTAATACTATGTATAATATTTTGTAATTTGTGTTGTCTTCTACTAGTGATGTAACATTGGGTATGACGCTCAATGGCGTTGTGATGCTGTATACTTTACCAACTTGTGTAAATAGAAGTGATGATAATATAAAAAAAATTAATAGAAGTGATGATAAA
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| CDS seq | ATGGCGCTCCTCCCCCGCGCGGCGCGGCTGGCGGCCCTCTCCGCGCCGCGCGCCTACTCGTCCGCCACGGCGGCGGCGGCGGGCGCGGGTGGCTCCGCGTCGCCCGCGCCATACGGCGGGGCGCCGCCGCCGGCCGCGAACTCCAAGGCGGCGGAGTTCGTGATCTCCAAGGTGGACGACCTGATGAACTGGGCGCGCCGGGGCTCGATCTGGCCCATGACGTTCGGGCTCGCCTGCTGCGCCGTGGAGATGATGCACACGGGCGCCTCCCGCTACGACTTCGACCGGTTCGGCGTCATCTTCCGCCCCTCCCCGCGCCAGTCCGACTGCATGATCGTCGCCGGCACGCTCACCAACAAGATGGCCCCCGCGCTCCGCAAGGTTTACGATCAGATGCCAGAACCTCGATGGGTTATTTCAATGGGCAGCTGTGCCAACGGTGGTGGATACTACCACTACTCCTACTCCGTTGTGCGCGGATGCGACAGGATTGTTCCCGTGGACATCTACGTCCCTGGATGCCCTCCAACTGCTGAAGCTCTACTGTATGGCGTCCTGCAGTTGCAGAAGAAGATCAACAGGCGCAGGGATTTCCTTCACTGGTGGAACAAGTGA
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| Protein seq | MALLPRAARLAALSAPRAYSSATAAAAGAGGSASPAPYGGAPPPAANSKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGASRYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRRDFLHWWNK |
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| Function | NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [UniProtKB/Swiss-Prot:P42027] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0533700 | Os05t0533700-01 | Chr05 | 26494551 | 26497193 | + | irgsp1_rep | ||
| CDS seq | ATGGCGCTCCTCCCCCGCGCGGCGCGGCTGGCGGCCCTCTCCGCGCCGCGCGCCTACTCGTCCGCCACGGCGGCGGCGGCGGGCGCGGGTGGCTCCGCGTCGCCCGCGCCATACGGCGGGGCGCCGCCGCCGGCCGCGAACTCCAAGGCGGCGGAGTTCGTGATCTCCAAGGTGGACGACCTGATGAACTGGGCGCGCCGGGGCTCGATCTGGCCCATGACGTTCGGGCTCGCCTGCTGCGCCGTGGAGATGATGCACACGGGCGCCTCCCGCTACGACTTCGACCGGTTCGGCGTCATCTTCCGCCCCTCCCCGCGCCAGTCCGACTGCATGATCGTCGCCGGCACGCTCACCAACAAGATGGCCCCCGCGCTCCGCAAGGTTTACGATCAGATGCCAGAACCTCGATGGGTTATTTCAATGGGCAGCTGTGCCAACGGTGGTGGATACTACCACTACTCCTACTCCGTTGTGCGCGGATGCGACAGGATTGTTCCCGTGGACATCTACGTCCCTGGATGCCCTCCAACTGCTGAAGCTCTACTGTATGGCGTCCTGCAGTTGCAGAAGAAGATCAACAGGCGCAGGGATTTCCTTCACTGGTGGAACAAGTGA
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| Protein seq | MALLPRAARLAALSAPRAYSSATAAAAGAGGSASPAPYGGAPPPAANSKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGASRYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRRDFLHWWNK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0533700 | RBH | 9.426044 | 9.596715 | 19.875496 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g45730 | RBH | 5.978021 | 6.049833 | 4.754592 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0720300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0024810 | RBH | 2.152446 | 32.096939 | 12.467864 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0024620 | RBH | 0.892562 | 5.586044 | 10.827929 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0024600 | RBH | 4.232586 | 48.860863 | 21.193615 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0024620 | RBH | 0.675945 | 0.716974 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0024650 | RBH | 22.436806 | 25.028406 | 37.560738 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0411300 | RBH | 12.2484035 | 56.780918 | 30.1172505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0024230 | RBH | 0.642375 | 1.117801 | 3.678556 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0422500 | RBH | 8.2704585 | 22.2525155 | 14.2643635 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0024440 | RBH | 0.866790 | 0.532695 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024310 | RBH | 4.383806 | 20.167482 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0024500 | RBH | 15.743811 | 25.943569 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0024500 | RBH | 2.091712 | 2.439120 | 2.308819 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0024560 | RBH | 0.720544 | 7.656787 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G023990 | RBH | 0.955658 | 1.950465 | 4.835283 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0024440 | RBH | 3.136357 | 55.017288 | 25.394604 |
