Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g58022 | OGI:12036080 | 8/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:33560066-33560804 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGTCTTAACTGAATATTCAGACAAAAAAAAAAGAAGGAAAAGATTCCATTAAGACAGTTATGAGTTTGATTGAGTTTCCCCTACTTGACCAAACAAGTTCCAATTCCGTTATTTCAACTACACTAAAAGATCTTTCGAATTGGTCAAGACTCTCTAGTTTATGGCCCCTTCTATATGGTACCAGTTGTTGTTTCATTGAATTTGCTTCATTAATAGGCTCACGATTCGACTTTGATCGTTATGGATTGGTACCAAGATCAAGTCCTAGGCAAGCGGACCTAATTTTAACAGCCGGTACAGTAACAATGAAAATGGCTCCCTCTTTAGTGAGATTATATGAGCAAATGCCTGAACCAAAATACGTCATTGCTATGGGAGCTTGTACTATTACTGGTGGAATGTTCAGTACGGATTCCTATAGTACTGTTCGGGGAGTTGATAAGTTAATTCCTGTGGACGTCTACTTGCCGGGTTGCCCACCTAAACCAGAGGCTGTTATAGATGCCCTAACAAAACTTCGTAAGAAGATATCGCGAGAAATAGTTGAGGATCGAACTCTATCTCAAAAGAAAAATCGATGTTTTACTACCAGCCACAAGCTTTATGTTCGGCGCAGTACTAATACTGGAACTTATGAGCAAGAATTGCTCTATCAATCACCATCTACTTTAGACATATCTTCTGAAACTTTTTTCAAATCCAAAAGTCCAGTATCTTCCTACAAATTAGTGAATTAG
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| CDS seq | ATGAGTTTGATTGAGTTTCCCCTACTTGACCAAACAAGTTCCAATTCCGTTATTTCAACTACACTAAAAGATCTTTCGAATTGGTCAAGACTCTCTAGTTTATGGCCCCTTCTATATGGTACCAGTTGTTGTTTCATTGAATTTGCTTCATTAATAGGCTCACGATTCGACTTTGATCGTTATGGATTGGTACCAAGATCAAGTCCTAGGCAAGCGGACCTAATTTTAACAGCCGGTACAGTAACAATGAAAATGGCTCCCTCTTTAGTGAGATTATATGAGCAAATGCCTGAACCAAAATACGTCATTGCTATGGGAGCTTGTACTATTACTGGTGGAATGTTCAGTACGGATTCCTATAGTACTGTTCGGGGAGTTGATAAGTTAATTCCTGTGGACGTCTACTTGCCGGGTTGCCCACCTAAACCAGAGGCTGTTATAGATGCCCTAACAAAACTTCGTAAGAAGATATCGCGAGAAATAGTTGAGGATCGAACTCTATCTCAAAAGAAAAATCGATGTTTTACTACCAGCCACAAGCTTTATGTTCGGCGCAGTACTAATACTGGAACTTATGAGCAAGAATTGCTCTATCAATCACCATCTACTTTAGACATATCTTCTGAAACTTTTTTCAAATCCAAAAGTCCAGTATCTTCCTACAAATTAGTGAATTAG
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| Protein seq | MSLIEFPLLDQTSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLRKKISREIVEDRTLSQKKNRCFTTSHKLYVRRSTNTGTYEQELLYQSPSTLDISSETFFKSKSPVSSYKLVN |
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| Function | NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [UniProtKB/Swiss-Prot:P0C343] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g58022 | LOC_Os01g58022.1 | Chr01 | 33560066 | 33560804 | + | MSU_osa1r7 | ||
| CDS seq | ATGAGTTTGATTGAGTTTCCCCTACTTGACCAAACAAGTTCCAATTCCGTTATTTCAACTACACTAAAAGATCTTTCGAATTGGTCAAGACTCTCTAGTTTATGGCCCCTTCTATATGGTACCAGTTGTTGTTTCATTGAATTTGCTTCATTAATAGGCTCACGATTCGACTTTGATCGTTATGGATTGGTACCAAGATCAAGTCCTAGGCAAGCGGACCTAATTTTAACAGCCGGTACAGTAACAATGAAAATGGCTCCCTCTTTAGTGAGATTATATGAGCAAATGCCTGAACCAAAATACGTCATTGCTATGGGAGCTTGTACTATTACTGGTGGAATGTTCAGTACGGATTCCTATAGTACTGTTCGGGGAGTTGATAAGTTAATTCCTGTGGACGTCTACTTGCCGGGTTGCCCACCTAAACCAGAGGCTGTTATAGATGCCCTAACAAAACTTCGTAAGAAGATATCGCGAGAAATAGTTGAGGATCGAACTCTATCTCAAAAGAAAAATCGATGTTTTACTACCAGCCACAAGCTTTATGTTCGGCGCAGTACTAATACTGGAACTTATGAGCAAGAATTGCTCTATCAATCACCATCTACTTTAGACATATCTTCTGAAACTTTTTTCAAATCCAAAAGTCCAGTATCTTCCTACAAATTAGTGAATTAG
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| Protein seq | MSLIEFPLLDQTSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLRKKISREIVEDRTLSQKKNRCFTTSHKLYVRRSTNTGTYEQELLYQSPSTLDISSETFFKSKSPVSSYKLVN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 96.941048 | 98.175362 | 16.937952 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0423484 | RBH | 1.186243 | 0.0 | 2.620930 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g19420 | RBH | 36.861362 | 37.772552 | 7.257203 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0423484 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036480 | RBH | 90.978035 | 20.542953 | 96.795135 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035990 | RBH | 75.699196 | 3.828083 | 65.759842 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0036370 | RBH | 214.115616 | 16.033144 | 174.446960 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035760 | RBH | 53.487034 | 1.385663 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0013720 | SBH | 1720.075439 | 40.556133 | 797.819580 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0013210 | SBH | 29.654196 | 1.836470 | 11.212577 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0491200 | SBH | 16.947334 | 18.497586 | 33.769806 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0013730 | SBH | 23.575542 | 4.081563 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0013670 | SBH | 3.457268 | 50.889935 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0013380 | SBH | 177.761993 | 300.369934 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019790 | RBH | 56.035107 | 0.0 | 33.613651 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0013510 | SBH | 13.419702 | 56.295811 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G009760 | SBH | 12.538786 | 1.889627 | 15.770505 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004670 | SBH | 511.263763 | 197.986572 | 805.671753 |
