Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0028450 | OGI:04094390 | 14/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:30742445-30743232 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcaggcgtactcgctttcgaaggttctttcagagaaggaagcgagcagggtcgcggaggagaacggcatcagcctggtgaccgtttgcccggtggtcaccgttggcccggcgccggcagcggaggccaaaccgtgcgtcgctgccgtcctctccttgctctccggtgataactaatcgaatcaagaaccggccggtccatggcaaatgcggcaacgaaaagcaattcctgtgaaatttatttgttcatctcttgattttctttcaggcgaccaggagatgatcagcaccgtgaagctcatggagaaggccaccggcgggctaatgctggtccacgtcgacgacctctgccgcgccgagatattcctcgccgagaagccgccgccgccggcggcggcggcggcggagaggtacatctgctgcggcctcagcgccaccatgctgcagctcgcccgcttcctggcggccaaatacccggagtacaatgtcgacgtcgccgcgtaagatcgagctgatctcactgagtaataattccccatgcgtctccatgatcttatcgagagctctgacgatggtgaactttcatgcagcctcggcgacctcccggagaagccgaggatccgcctctcgtcggagaagctcgccggagaagggttcgagttcaagaacaggacgctggacgagatgtacgatgatgccttcttggagtacggtagagccctcgggattctgccatactgataacgatgttgttcccctcgtatatcatctgtttctctggtggtgat
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| CDS seq | atgcaggcgtactcgctttcgaaggttctttcagagaaggaagcgagcagggtcgcggaggagaacggcatcagcctggtgaccgtttgcccggtggtcaccgttggcccggcgccggcagcggaggccaaaccgtgcgtcgctgccgtcctctccttgctctccggcgaccaggagatgatcagcaccgtgaagctcatggagaaggccaccggcgggctaatgctggtccacgtcgacgacctctgccgcgccgagatattcctcgccgagaagccgccgccgccggcggcggcggcggcggagaggtacatctgctgcggcctcagcgccaccatgctgcagctcgcccgcttcctggcggccaaatacccggagtacaatgtcgacgtcgccgccctcggcgacctcccggagaagccgaggatccgcctctcgtcggagaagctcgccggagaagggttcgagttcaagaacaggacgctggacgagatgtacgatgatgccttcttggagtacggtagagccctcgggattctgccatactga
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| Protein seq | MQAYSLSKVLSEKEASRVAEENGISLVTVCPVVTVGPAPAAEAKPCVAAVLSLLSGDQEMISTVKLMEKATGGLMLVHVDDLCRAEIFLAEKPPPPAAAAAERYICCGLSATMLQLARFLAAKYPEYNVDVAALGDLPEKPRIRLSSEKLAGEGFEFKNRTLDEMYDDAFLEYGRALGILPY |
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| Function | Anthocyanidin reductase ((2S)-flavan-3-ol-forming) [UniProtKB/Swiss-Prot:Q5FB34] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0028450 | OsKeNa_04g0028450.01 | Chr04 | 30742445 | 30743232 | + | NAM | ||
| CDS seq | atgcaggcgtactcgctttcgaaggttctttcagagaaggaagcgagcagggtcgcggaggagaacggcatcagcctggtgaccgtttgcccggtggtcaccgttggcccggcgccggcagcggaggccaaaccgtgcgtcgctgccgtcctctccttgctctccggcgaccaggagatgatcagcaccgtgaagctcatggagaaggccaccggcgggctaatgctggtccacgtcgacgacctctgccgcgccgagatattcctcgccgagaagccgccgccgccggcggcggcggcggcggagaggtacatctgctgcggcctcagcgccaccatgctgcagctcgcccgcttcctggcggccaaatacccggagtacaatgtcgacgtcgccgccctcggcgacctcccggagaagccgaggatccgcctctcgtcggagaagctcgccggagaagggttcgagttcaagaacaggacgctggacgagatgtacgatgatgccttcttggagtacggtagagccctcgggattctgccatactga
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| Protein seq | MQAYSLSKVLSEKEASRVAEENGISLVTVCPVVTVGPAPAAEAKPCVAAVLSLLSGDQEMISTVKLMEKATGGLMLVHVDDLCRAEIFLAEKPPPPAAAAAERYICCGLSATMLQLARFLAAKYPEYNVDVAALGDLPEKPRIRLSSEKLAGEGFEFKNRTLDEMYDDAFLEYGRALGILPY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0630300 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g53780 | RBH | 0.000000 | 0.0 | 0.179051 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0630300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027660 | RBH | 0.000000 | 0.0 | 4.425840 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0028160 | SBH | 0.0 | 0.0 | 2.185503 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0027940 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0028180 | RBH | 0.0 | 0.0 | 1.745683 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0505900 | RBH | 0.047325 | 0.092768 | 0.460921 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026880 | RBH | 0.0 | 0.0 | 0.663762 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0509500 | SBH | 4.8475155 | 0.251505 | 19.1165945 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0027280 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0027110 | RBH | 0.509814 | 4.906676 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0027150 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027700 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027790 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G027080 | RBH | 0.0 | 0.0 | 0.571099 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0027010 | RBH | 0.0 | 0.0 | 2.627548 |
