Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0027280 | OGI:04094420 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:33496042-33498035 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atcacgaaaagcatttcttgttctgcctctctgtctggcgactggcgtcgtcgcttgtaaaatagtgttggctaagtcaaatgcattatgttcctgctctccgggatttgtcctggcaagtgccacaacagcgcaatcagcaaaagaaacctcatcatcagtgtgctgctcggattctacctgggagtaaacccaagtcaccttctctgtcacaggagaggtattaactgaccggagagagagagagacgatgtcgtcggaggttgagaggaagacggtgtgcgtcaccggcggcaacgggtacgttgcttcattgctcgtcaagatgctcctggagaaaggatacgctgttcagacaaccgtcagagatcccagtgagattctactccctttctttcttgttacatgtttttccagtgttcagttttaactgaaaatcgaagaacatgtcatcagttcataatttgtttcagaggagtatttgcacgttcagttttgggattgattgtgtcagtacaattttggtttggcctctgaaactgcttttgtaactctgaatttcagataacccggagaaggtctcccatttcaaggacatggaaaatcggccccctgaaggtctttcgcgccaacttggaggatgaaggcagcttcgacgaggccgtcgccggctgccactacgccttcctcgtcgccgctccggtgtacgacaagagccacaagtccgacgatctcgaggtgaccactgctgcaacctgcaagctcgattagtatctgtagtcagttagttagttactgaattttgaacttggccatggcagaaagagatagtccaaggcggcgtcgggggcacactgaacgtgatgaggtcgtgcgcgagagccggcacggtgaagcgcgtgatcctgacgtcgtcgacggccgccgtctccagcctgcggccgctggaaggcgccggccatgtcctcgacgagtcgtcctggtccgacatcgagtacctcagatccatggagaagctgtcgccgacgcaggtacacatatatacacacgagctgttccatgtcactgaaccacagcaatgtctcgtagaacatgagttcggcgccattgttgctgcatgcactgcaggcgtactcgatctccaaggttctttcggagaaggaggcgaccaagttcgcggaggagaacggtctcagcctggtgaccctctgcccggtcgtcgccgtcggagcatcgccggcggtgagggtcgataccagcgtcccggcctgcctctcgttgataaccggtgaggaactatctagcgatcaccgaatgaatgaaacaagaagcaatccaagaactcgacttctgaacgtttttgggtcgctgcatcgatgatctgtgaaTtttttttttcaggcgacgaggagatgatgaacatcctcaagggcatcgagaaggcgtccgggtggtcgatgccgatggtccacatcgaggacgtgtgccgcgccgagatcttcgtcgccgaggaggagtcggcgtcggggaggtacatctgcggcagcctcaacaccacggtcaccgagatcgccggcttcctggcggccaagtacccccagtacaacgtcagatgcgattggtaattaagaaattaagctttatgcattcgtgcatttggttatctgaatctgatcatgcgttgctatgtacgcagcatcgaagagcatcaccccgagaagccgaccatctcgctctcgtcggcgaagctcatcggcgaagggttcgagttcaagtacaagaacctggacgagatgtacgacgacctcgtcgcgtacggcaaggccctggggttgatccccaactgatggtgatgatgggcggcgtaattccactgctttggcgattacgaccaaacgtgtgttgctttcaaaaatactattgtgtctagcattctattgctacattgctagtagtactagtaccaagttccaatacatttggcggtttggctg
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| CDS seq | atgtcgtcggaggttgagaggaagacggtgtgcgtcaccggcggcaacgggtacgttgcttcattgctcgtcaagatgctcctggagaaaggatacgctgttcagacaaccataacccggagaaggtctcccatttcaaggacatggaaaatcggccccctgaaggtctttcgcgccaacttggaggatgaaggcagcttcgacgaggccgtcgccggctgccactacgccttcctcgtcgccgctccggtgtacgacaagagccacaagtccgacgatctcgagaaagagatagtccaaggcggcgtcgggggcacactgaacgtgatgaggtcgtgcgcgagagccggcacggtgaagcgcgtgatcctgacgtcgtcgacggccgccgtctccagcctgcggccgctggaaggcgccggccatgtcctcgacgagtcgtcctggtccgacatcgagtacctcagatccatggagaagctgtcgccgacgcaggcgtactcgatctccaaggttctttcggagaaggaggcgaccaagttcgcggaggagaacggtctcagcctggtgaccctctgcccggtcgtcgccgtcggagcatcgccggcggtgagggtcgataccagcgtcccggcctgcctctcgttgataaccggcgacgaggagatgatgaacatcctcaagggcatcgagaaggcgtccgggtggtcgatgccgatggtccacatcgaggacgtgtgccgcgccgagatcttcgtcgccgaggaggagtcggcgtcggggaggtacatctgcggcagcctcaacaccacggtcaccgagatcgccggcttcctggcggccaagtacccccagtacaacgtcagatgcgattgcatcgaagagcatcaccccgagaagccgaccatctcgctctcgtcggcgaagctcatcggcgaagggttcgagttcaagtacaagaacctggacgagatgtacgacgacctcgtcgcgtacggcaaggccctggggttgatccccaactga
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| Protein seq | MSSEVERKTVCVTGGNGYVASLLVKMLLEKGYAVQTTITRRRSPISRTWKIGPLKVFRANLEDEGSFDEAVAGCHYAFLVAAPVYDKSHKSDDLEKEIVQGGVGGTLNVMRSCARAGTVKRVILTSSTAAVSSLRPLEGAGHVLDESSWSDIEYLRSMEKLSPTQAYSISKVLSEKEATKFAEENGLSLVTLCPVVAVGASPAVRVDTSVPACLSLITGDEEMMNILKGIEKASGWSMPMVHIEDVCRAEIFVAEEESASGRYICGSLNTTVTEIAGFLAAKYPQYNVRCDCIEEHHPEKPTISLSSAKLIGEGFEFKYKNLDEMYDDLVAYGKALGLIPN |
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| Function | Anthocyanidin reductase ((2S)-flavan-3-ol-forming) [UniProtKB/Swiss-Prot:D7U6G6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0027280 | OsLima_04g0027280.01 | Chr04 | 33496292 | 33498018 | + | NAM | ||
| CDS seq | atgtcgtcggaggttgagaggaagacggtgtgcgtcaccggcggcaacgggtacgttgcttcattgctcgtcaagatgctcctggagaaaggatacgctgttcagacaaccataacccggagaaggtctcccatttcaaggacatggaaaatcggccccctgaaggtctttcgcgccaacttggaggatgaaggcagcttcgacgaggccgtcgccggctgccactacgccttcctcgtcgccgctccggtgtacgacaagagccacaagtccgacgatctcgagaaagagatagtccaaggcggcgtcgggggcacactgaacgtgatgaggtcgtgcgcgagagccggcacggtgaagcgcgtgatcctgacgtcgtcgacggccgccgtctccagcctgcggccgctggaaggcgccggccatgtcctcgacgagtcgtcctggtccgacatcgagtacctcagatccatggagaagctgtcgccgacgcaggcgtactcgatctccaaggttctttcggagaaggaggcgaccaagttcgcggaggagaacggtctcagcctggtgaccctctgcccggtcgtcgccgtcggagcatcgccggcggtgagggtcgataccagcgtcccggcctgcctctcgttgataaccggcgacgaggagatgatgaacatcctcaagggcatcgagaaggcgtccgggtggtcgatgccgatggtccacatcgaggacgtgtgccgcgccgagatcttcgtcgccgaggaggagtcggcgtcggggaggtacatctgcggcagcctcaacaccacggtcaccgagatcgccggcttcctggcggccaagtacccccagtacaacgtcagatgcgattgcatcgaagagcatcaccccgagaagccgaccatctcgctctcgtcggcgaagctcatcggcgaagggttcgagttcaagtacaagaacctggacgagatgtacgacgacctcgtcgcgtacggcaaggccctggggttgatccccaactga
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| Protein seq | MSSEVERKTVCVTGGNGYVASLLVKMLLEKGYAVQTTITRRRSPISRTWKIGPLKVFRANLEDEGSFDEAVAGCHYAFLVAAPVYDKSHKSDDLEKEIVQGGVGGTLNVMRSCARAGTVKRVILTSSTAAVSSLRPLEGAGHVLDESSWSDIEYLRSMEKLSPTQAYSISKVLSEKEATKFAEENGLSLVTLCPVVAVGASPAVRVDTSVPACLSLITGDEEMMNILKGIEKASGWSMPMVHIEDVCRAEIFVAEEESASGRYICGSLNTTVTEIAGFLAAKYPQYNVRCDCIEEHHPEKPTISLSSAKLIGEGFEFKYKNLDEMYDDLVAYGKALGLIPN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0027280 | OsLima_04g0027280.02 | Chr04 | 33496042 | 33498035 | + | IsoSeq | ||
| CDS seq | tcacgaaaagcatttcttgttctgcctctctgtctggcgactggcgtcgtcgcttgtaaaatagtgttggctaagtcaaatgcattatgttcctgctctccgggatttgtcctggcaagtgccacaacagcgcaatcagcaaaagaaacctcatcatcagtgtgctgctcggattctacctgg |
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| Protein seq | SRKAFLVLPLCLATGVVACKIVLAKSNALCSCSPGFVLASATTAQSAKETSSSVCCSDSTW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr04 | 33496863 | 33497329 | + | OsLima_04g0027280.02 | OsLima_04g0027280.01,OsLima_04g0027280.02 | All |
| A5 | Chr04 | 33496402 | 33496606 | + | OsLima_04g0027280.02 | OsLima_04g0027280.01,OsLima_04g0027280.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0630400 | RBH | 4.520923 | 2.387727 | 8.415969 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g53810 | RBH | 2.771829 | 1.679322 | 1.826867 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0630400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027680 | RBH | 0.826417 | 6.603407 | 0.789067 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028490 | RBH | 0.881171 | 0.0 | 4.708849 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0028170 | RBH | 2.932927 | 0.0 | 7.846279 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0027940 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0028200 | RBH | 5.225717 | 0.000000 | 21.543972 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0506100 | RBH | 6.529542 | 0.7101335 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026900 | RBH | 0.527851 | 0.666329 | 2.790604 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0509600 | RBH | 27.593279 | 21.514911 | 0.0558875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0005240 | RBH | 0.223447 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0027120 | RBH | 0.760878 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0027170 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027740 | RBH | 2.173003 | 0.0 | 2.173171 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027810 | RBH | 0.729164 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G027090 | RBH | 0.314269 | 0.0 | 0.914492 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0027020 | RBH | 1.201336 | 0.000000 | 24.774817 |
