Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0011100 | OGI:04057550 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:16913464-16917282 | ||||||||
| Gene Symbol | rNBS56 | ||||||||||
| DNA seq | atggacgacatcgttggaatattgaagggagcagctggtcttgctgccgatgccaatgccttccgtgagttcttcaactgggccgcaccacgtgtcttggctgccgtacgttctcagcagcagcagcatctgctgcaagtggatccaggaggggtaggatcagcatcagctagagacaacagaacagctccactgcaccagattgaggatgatcttcagaatctcgagaacgacctatggctgatccaatcaactacatccacaatgtatgacctcatcgatcgtcttgaatggcatagccacaaggatacagaagactggcatcttcgccagatcaaggatgtagcgtacgatgccgaggacctccttgatgagtacaattactatgctctcaaggtgaaggtggacacgagcaagaacttggggcaagatcactcgcatgaaccctttttggagttcctgaacagtgtcaacttcagtaaagtaatgaaaatcaaaaatagactaaagcaggtttttgaccaatccaagggtttaggctttcacaaaacaccaaagaagtttgatcgattagtcagaccagagacatgccgtgtcctagacgagccagatgagatatttggtcgtgaaaaagaactgaaggagttgaagcaaaagctaggagtacgtggacgcaagagaggcagacctgtggcatgcagcactacagctgaagcaaggaggacagagttgcctgtgctgccaatagttggtatgggcggcatcgggaagaccaccatggcacaacaaatctgtgaggatagagtggtgcggaatcacttcgactgcatactctggatatgtgtctcggatgaattcgaggtaaacaggttaacaagagatgttctgaagtctcttggagtaaagtcacaagattctgatacaagggatactcttatggttaatttacgtgatagtgtcaagtcaaagaagtttttactcgtccttgatgacatgtgggatgatgtcttaaaagatgagagaggatggagaacatttcatagaactttaagcaatggtcttcagggcagtatgattttggtcaccactagatcttccaaagttgctaacctagtcagcaacagtgatccctatgagctcaacggactgcaaaatgatgttttctgggatttcttcaaactatgcgcattcggatccaacagctctcgcaatagcccagagctggagcacattcgtccagagttggagcgcattggtagagctatacttcccaagttgaagggttcacctttggctgccaaaactcttggacgcttgttgaaaagtaacttaagtgtagagcactgggaggacatattgagaagtgaattgtggaaattggaacaagaggagactgacattttgccagcccttcgactgagttacgtttacctaccacgacacatgaaaagatgcttctcaatatgtgccctgtatccaaaggatcataaatttgacaaggagtttttagcagacatttgggtagcacaagggtatgtggaggctgaagatgcatcatcttgctttaatgaccttgtaaatcggtcattctttcagaaagcagctggctatagtgatatgtacgtaattcatgacttgatacatgatactgcacagctagtctccaaggatgagtgcttcatcatacaacatgtgagtgacctagctaaaatcccatcaaaggttcgccatctgtcaatattcaccaagggaaatatcagctgtacagaaatagtgactatttgcacacaaaataaaaaactgcggtccctaatatgcaatgaatcttaccgaagtattaaacaattcgctcccgtgattgattgttggttcaaggaactcccgagtatccgtgtattgatttttaaattttcaacggtgagaaagttacctgagagcataggcaactcaaaacatttgcgttaccttggtttattgggaagttctactttcgagacccttccttcatctgttagttgcctgtatcatgtccagactataaatgccaagggttgtgttttcaaaagataccctcaaggtttcagtgatctgatttccttaaacaaaattgaatcaaagggcttccaatttaacaaggttaaagataagcaattcctagaatggtccacaacggaaatagctgatgaacaattacagatgacagaggagcagattgaattgttacctcattggaatcttgagcatttgataataaagaattacctaggtcaatcttgccccagctggctccagccagactgcctgaaagtgctgacttcacttgaactttatgggtgcaggaacattcagagcctatcattctttgacccactcttttctgatttagaagagtcaaacagcatttatcaccttgaggtgttggatgtccaccagtgtcctaacattgattggcaaggtttggtggctttaccctcttctcttagaagggttacccttggcaactttggccattcgacagatcactttgtgagttgctttcgtggcctctccctcctgacacatctggaaatacattgctggttcttaacatctattcccctgcaagtttggatgagtaatcttccatccttggagaatttgcgtattgataattgtggctccctcacatccatctgtgtctctgaggcaagcaacatacacactgttggagtattttcatccctttcaacagtcaccatttcgttttgcaatgcactgttgagtcttgatgagttctttatgcccgcttatatgcctttcgtgaagaccattgatgtgttattttgcaaggaattagcattactgccagttcatgagctccaccttttttctcgcttggagaagctatgtattagaaactgtcccaagttgaatatgcagaggagaatgacattaccatcctctcttcggatgctcagcttattactttgtccaagcatagagtacatcgacaacagccatctggcgagtgcaatgaaactcaagggacttagccttcaacttatgaggtgtccagacctcatctctattgttggtgctatatctgtctctgaaatagtgcagggtcgtatagaagattgccccaagctgatggagataacacaaccttttaaggtcatgactggtacgtcctacggaataactcTtttttttttgttaaaacttaaaactggtaattccccgcttagagtaatctcattaaattttttgattttttttgtgttcttattaagttcacagaaaattgtcatgatagaattgctctgcttccatgtcataaattatgttatacttatttgtaatatttagtttcgtgtgaatttcatgattggtaatacaattaaccgtattttcatcaactatggcaaacggactgatttccattggctgtcaagtacacaataagccgatactagcttttccaagactcaacttttataatactatgccatagaatacttatttgtttagatttagttatgttgtaggaaaagaaagatgaaacgaagtacgaaatgtattgtttatattcattggatttgatagttcattggcatcgacgtgcaggccataaataatgatgagcgttcaagatgatttcagatgcaaacagcacagaacatgccaacgtaagttatgttggggatcagggagaatcatctctcagaatatatatctggtaatatactgtgttattgtgtattggatcgagagagccaaaagaaagtgcagcctgatcagaccatgggtaggctaggagatgagaatctcaagaactga
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| CDS seq | atggacgacatcgttggaatattgaagggagcagctggtcttgctgccgatgccaatgccttccgtgagttcttcaactgggccgcaccacgtgtcttggctgccgtacgttctcagcagcagcagcatctgctgcaagtggatccaggaggggtaggatcagcatcagctagagacaacagaacagctccactgcaccagattgaggatgatcttcagaatctcgagaacgacctatggctgatccaatcaactacatccacaatgtatgacctcatcgatcgtcttgaatggcatagccacaaggatacagaagactggcatcttcgccagatcaaggatgtagcgtacgatgccgaggacctccttgatgagtacaattactatgctctcaaggtgaaggtggacacgagcaagaacttggggcaagatcactcgcatgaaccctttttggagttcctgaacagtgtcaacttcagtaaagtaatgaaaatcaaaaatagactaaagcaggtttttgaccaatccaagggtttaggctttcacaaaacaccaaagaagtttgatcgattagtcagaccagagacatgccgtgtcctagacgagccagatgagatatttggtcgtgaaaaagaactgaaggagttgaagcaaaagctaggagtacgtggacgcaagagaggcagacctgtggcatgcagcactacagctgaagcaaggaggacagagttgcctgtgctgccaatagttggtatgggcggcatcgggaagaccaccatggcacaacaaatctgtgaggatagagtggtgcggaatcacttcgactgcatactctggatatgtgtctcggatgaattcgaggtaaacaggttaacaagagatgttctgaagtctcttggagtaaagtcacaagattctgatacaagggatactcttatggttaatttacgtgatagtgtcaagtcaaagaagtttttactcgtccttgatgacatgtgggatgatgtcttaaaagatgagagaggatggagaacatttcatagaactttaagcaatggtcttcagggcagtatgattttggtcaccactagatcttccaaagttgctaacctagtcagcaacagtgatccctatgagctcaacggactgcaaaatgatgttttctgggatttcttcaaactatgcgcattcggatccaacagctctcgcaatagcccagagctggagcacattcgtccagagttggagcgcattggtagagctatacttcccaagttgaagggttcacctttggctgccaaaactcttggacgcttgttgaaaagtaacttaagtgtagagcactgggaggacatattgagaagtgaattgtggaaattggaacaagaggagactgacattttgccagcccttcgactgagttacgtttacctaccacgacacatgaaaagatgcttctcaatatgtgccctgtatccaaaggatcataaatttgacaaggagtttttagcagacatttgggtagcacaagggtatgtggaggctgaagatgcatcatcttgctttaatgaccttgtaaatcggtcattctttcagaaagcagctggctatagtgatatgtacgtaattcatgacttgatacatgatactgcacagctagtctccaaggatgagtgcttcatcatacaacatgtgagtgacctagctaaaatcccatcaaaggttcgccatctgtcaatattcaccaagggaaatatcagctgtacagaaatagtgactatttgcacacaaaataaaaaactgcggtccctaatatgcaatgaatcttaccgaagtattaaacaattcgctcccgtgattgattgttggttcaaggaactcccgagtatccgtgtattgatttttaaattttcaacggtgagaaagttacctgagagcataggcaactcaaaacatttgcgttaccttggtttattgggaagttctactttcgagacccttccttcatctgttagttgcctgtatcatgtccagactataaatgccaagggttgtgttttcaaaagataccctcaaggtttcagtgatctgatttccttaaacaaaattgaatcaaagggcttccaatttaacaaggttaaagataagcaattcctagaatggtccacaacggaaatagctgatgaacaattacagatgacagaggagcagattgaattgttacctcattggaatcttgagcatttgataataaagaattacctaggtcaatcttgccccagctggctccagccagactgcctgaaagtgctgacttcacttgaactttatgggtgcaggaacattcagagcctatcattctttgacccactcttttctgatttagaagagtcaaacagcatttatcaccttgaggtgttggatgtccaccagtgtcctaacattgattggcaaggtttggtggctttaccctcttctcttagaagggttacccttggcaactttggccattcgacagatcactttgtgagttgctttcgtggcctctccctcctgacacatctggaaatacattgctggttcttaacatctattcccctgcaagtttggatgagtaatcttccatccttggagaatttgcgtattgataattgtggctccctcacatccatctgtgtctctgaggcaagcaacatacacactgttggagtattttcatccctttcaacagtcaccatttcgttttgcaatgcactgttgagtcttgatgagttctttatgcccgcttatatgcctttcgtgaagaccattgatgtgttattttgcaaggaattagcattactgccagttcatgagctccaccttttttctcgcttggagaagctatgtattagaaactgtcccaagttgaatatgcagaggagaatgacattaccatcctctcttcggatgctcagcttattactttgtccaagcatagagtacatcgacaacagccatctggcgagtgcaatgaaactcaagggacttagccttcaacttatgaggtgtccagacctcatctctattgttggtgctatatctgtctctgaaatagtgcagggtcgtatagaagattgccccaagctgatggagataacacaaccttttaaggtcatgactgagagccaaaagaaagtgcagcctgatcagaccatgggtaggctaggagatgagaatctcaagaactga
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| Protein seq | MDDIVGILKGAAGLAADANAFREFFNWAAPRVLAAVRSQQQQHLLQVDPGGVGSASARDNRTAPLHQIEDDLQNLENDLWLIQSTTSTMYDLIDRLEWHSHKDTEDWHLRQIKDVAYDAEDLLDEYNYYALKVKVDTSKNLGQDHSHEPFLEFLNSVNFSKVMKIKNRLKQVFDQSKGLGFHKTPKKFDRLVRPETCRVLDEPDEIFGREKELKELKQKLGVRGRKRGRPVACSTTAEARRTELPVLPIVGMGGIGKTTMAQQICEDRVVRNHFDCILWICVSDEFEVNRLTRDVLKSLGVKSQDSDTRDTLMVNLRDSVKSKKFLLVLDDMWDDVLKDERGWRTFHRTLSNGLQGSMILVTTRSSKVANLVSNSDPYELNGLQNDVFWDFFKLCAFGSNSSRNSPELEHIRPELERIGRAILPKLKGSPLAAKTLGRLLKSNLSVEHWEDILRSELWKLEQEETDILPALRLSYVYLPRHMKRCFSICALYPKDHKFDKEFLADIWVAQGYVEAEDASSCFNDLVNRSFFQKAAGYSDMYVIHDLIHDTAQLVSKDECFIIQHVSDLAKIPSKVRHLSIFTKGNISCTEIVTICTQNKKLRSLICNESYRSIKQFAPVIDCWFKELPSIRVLIFKFSTVRKLPESIGNSKHLRYLGLLGSSTFETLPSSVSCLYHVQTINAKGCVFKRYPQGFSDLISLNKIESKGFQFNKVKDKQFLEWSTTEIADEQLQMTEEQIELLPHWNLEHLIIKNYLGQSCPSWLQPDCLKVLTSLELYGCRNIQSLSFFDPLFSDLEESNSIYHLEVLDVHQCPNIDWQGLVALPSSLRRVTLGNFGHSTDHFVSCFRGLSLLTHLEIHCWFLTSIPLQVWMSNLPSLENLRIDNCGSLTSICVSEASNIHTVGVFSSLSTVTISFCNALLSLDEFFMPAYMPFVKTIDVLFCKELALLPVHELHLFSRLEKLCIRNCPKLNMQRRMTLPSSLRMLSLLLCPSIEYIDNSHLASAMKLKGLSLQLMRCPDLISIVGAISVSEIVQGRIEDCPKLMEITQPFKVMTESQKKVQPDQTMGRLGDENLKN |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0011100 | OsKeNa_04g0011100.01 | Chr04 | 16913464 | 16917282 | + | NAM | ||
| CDS seq | atggacgacatcgttggaatattgaagggagcagctggtcttgctgccgatgccaatgccttccgtgagttcttcaactgggccgcaccacgtgtcttggctgccgtacgttctcagcagcagcagcatctgctgcaagtggatccaggaggggtaggatcagcatcagctagagacaacagaacagctccactgcaccagattgaggatgatcttcagaatctcgagaacgacctatggctgatccaatcaactacatccacaatgtatgacctcatcgatcgtcttgaatggcatagccacaaggatacagaagactggcatcttcgccagatcaaggatgtagcgtacgatgccgaggacctccttgatgagtacaattactatgctctcaaggtgaaggtggacacgagcaagaacttggggcaagatcactcgcatgaaccctttttggagttcctgaacagtgtcaacttcagtaaagtaatgaaaatcaaaaatagactaaagcaggtttttgaccaatccaagggtttaggctttcacaaaacaccaaagaagtttgatcgattagtcagaccagagacatgccgtgtcctagacgagccagatgagatatttggtcgtgaaaaagaactgaaggagttgaagcaaaagctaggagtacgtggacgcaagagaggcagacctgtggcatgcagcactacagctgaagcaaggaggacagagttgcctgtgctgccaatagttggtatgggcggcatcgggaagaccaccatggcacaacaaatctgtgaggatagagtggtgcggaatcacttcgactgcatactctggatatgtgtctcggatgaattcgaggtaaacaggttaacaagagatgttctgaagtctcttggagtaaagtcacaagattctgatacaagggatactcttatggttaatttacgtgatagtgtcaagtcaaagaagtttttactcgtccttgatgacatgtgggatgatgtcttaaaagatgagagaggatggagaacatttcatagaactttaagcaatggtcttcagggcagtatgattttggtcaccactagatcttccaaagttgctaacctagtcagcaacagtgatccctatgagctcaacggactgcaaaatgatgttttctgggatttcttcaaactatgcgcattcggatccaacagctctcgcaatagcccagagctggagcacattcgtccagagttggagcgcattggtagagctatacttcccaagttgaagggttcacctttggctgccaaaactcttggacgcttgttgaaaagtaacttaagtgtagagcactgggaggacatattgagaagtgaattgtggaaattggaacaagaggagactgacattttgccagcccttcgactgagttacgtttacctaccacgacacatgaaaagatgcttctcaatatgtgccctgtatccaaaggatcataaatttgacaaggagtttttagcagacatttgggtagcacaagggtatgtggaggctgaagatgcatcatcttgctttaatgaccttgtaaatcggtcattctttcagaaagcagctggctatagtgatatgtacgtaattcatgacttgatacatgatactgcacagctagtctccaaggatgagtgcttcatcatacaacatgtgagtgacctagctaaaatcccatcaaaggttcgccatctgtcaatattcaccaagggaaatatcagctgtacagaaatagtgactatttgcacacaaaataaaaaactgcggtccctaatatgcaatgaatcttaccgaagtattaaacaattcgctcccgtgattgattgttggttcaaggaactcccgagtatccgtgtattgatttttaaattttcaacggtgagaaagttacctgagagcataggcaactcaaaacatttgcgttaccttggtttattgggaagttctactttcgagacccttccttcatctgttagttgcctgtatcatgtccagactataaatgccaagggttgtgttttcaaaagataccctcaaggtttcagtgatctgatttccttaaacaaaattgaatcaaagggcttccaatttaacaaggttaaagataagcaattcctagaatggtccacaacggaaatagctgatgaacaattacagatgacagaggagcagattgaattgttacctcattggaatcttgagcatttgataataaagaattacctaggtcaatcttgccccagctggctccagccagactgcctgaaagtgctgacttcacttgaactttatgggtgcaggaacattcagagcctatcattctttgacccactcttttctgatttagaagagtcaaacagcatttatcaccttgaggtgttggatgtccaccagtgtcctaacattgattggcaaggtttggtggctttaccctcttctcttagaagggttacccttggcaactttggccattcgacagatcactttgtgagttgctttcgtggcctctccctcctgacacatctggaaatacattgctggttcttaacatctattcccctgcaagtttggatgagtaatcttccatccttggagaatttgcgtattgataattgtggctccctcacatccatctgtgtctctgaggcaagcaacatacacactgttggagtattttcatccctttcaacagtcaccatttcgttttgcaatgcactgttgagtcttgatgagttctttatgcccgcttatatgcctttcgtgaagaccattgatgtgttattttgcaaggaattagcattactgccagttcatgagctccaccttttttctcgcttggagaagctatgtattagaaactgtcccaagttgaatatgcagaggagaatgacattaccatcctctcttcggatgctcagcttattactttgtccaagcatagagtacatcgacaacagccatctggcgagtgcaatgaaactcaagggacttagccttcaacttatgaggtgtccagacctcatctctattgttggtgctatatctgtctctgaaatagtgcagggtcgtatagaagattgccccaagctgatggagataacacaaccttttaaggtcatgactgagagccaaaagaaagtgcagcctgatcagaccatgggtaggctaggagatgagaatctcaagaactga
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| Protein seq | MDDIVGILKGAAGLAADANAFREFFNWAAPRVLAAVRSQQQQHLLQVDPGGVGSASARDNRTAPLHQIEDDLQNLENDLWLIQSTTSTMYDLIDRLEWHSHKDTEDWHLRQIKDVAYDAEDLLDEYNYYALKVKVDTSKNLGQDHSHEPFLEFLNSVNFSKVMKIKNRLKQVFDQSKGLGFHKTPKKFDRLVRPETCRVLDEPDEIFGREKELKELKQKLGVRGRKRGRPVACSTTAEARRTELPVLPIVGMGGIGKTTMAQQICEDRVVRNHFDCILWICVSDEFEVNRLTRDVLKSLGVKSQDSDTRDTLMVNLRDSVKSKKFLLVLDDMWDDVLKDERGWRTFHRTLSNGLQGSMILVTTRSSKVANLVSNSDPYELNGLQNDVFWDFFKLCAFGSNSSRNSPELEHIRPELERIGRAILPKLKGSPLAAKTLGRLLKSNLSVEHWEDILRSELWKLEQEETDILPALRLSYVYLPRHMKRCFSICALYPKDHKFDKEFLADIWVAQGYVEAEDASSCFNDLVNRSFFQKAAGYSDMYVIHDLIHDTAQLVSKDECFIIQHVSDLAKIPSKVRHLSIFTKGNISCTEIVTICTQNKKLRSLICNESYRSIKQFAPVIDCWFKELPSIRVLIFKFSTVRKLPESIGNSKHLRYLGLLGSSTFETLPSSVSCLYHVQTINAKGCVFKRYPQGFSDLISLNKIESKGFQFNKVKDKQFLEWSTTEIADEQLQMTEEQIELLPHWNLEHLIIKNYLGQSCPSWLQPDCLKVLTSLELYGCRNIQSLSFFDPLFSDLEESNSIYHLEVLDVHQCPNIDWQGLVALPSSLRRVTLGNFGHSTDHFVSCFRGLSLLTHLEIHCWFLTSIPLQVWMSNLPSLENLRIDNCGSLTSICVSEASNIHTVGVFSSLSTVTISFCNALLSLDEFFMPAYMPFVKTIDVLFCKELALLPVHELHLFSRLEKLCIRNCPKLNMQRRMTLPSSLRMLSLLLCPSIEYIDNSHLASAMKLKGLSLQLMRCPDLISIVGAISVSEIVQGRIEDCPKLMEITQPFKVMTESQKKVQPDQTMGRLGDENLKN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0375300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g30660 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0375300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0010330 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0011070 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0010760 | SBH | 0.0 | 0.000000 | 0.887001 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0010490 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0010730 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0290000 | SBH | 1.1245005 | 18.433896 | 6.161756 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0009720 | SBH | 0.0 | 0.403826 | 0.444865 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0288500 | RBH | 0.0055675 | 0.0357835 | 0.0277025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0010370 | SBH | 0.025593 | 0.020286 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0009910 | SBH | 0.000000 | 1.958913 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0009970 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0010500 | SBH | 0.0 | 0.240410 | 0.075803 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0010590 | SBH | 0.042731 | 3.007900 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G009800 | RBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0009820 | RBH | 0.0 | 0.0 | 0.0 |
