Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0011070 | OGI:04057550 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:16874130-16876020 | ||||||||
| Gene Symbol | rNBS56 | ||||||||||
| DNA seq | atgcatgacctcatcgaccgccttgagtggcatagccacaaagaaacagaagctgggcaccttcgccagataaaggatgtagtgtacgatgccgaggacctccttgatgagtacaattattatgctctcaaggtgaaggtgaaggcgagcaagaatttagggcaagatcacttgcatgaaccctttttggagttcttgggcaatgttaacttcagtggcaaattcaggaaagtgatggaaatccaagaaagactgaagcatgtttttgaccaatctaacagtttaggcttgcacaaaacacccaagaagtttgacaaaattgtcagaccagagacatgtcatgtcctcgacgagccagatgagatttttggtcgtgaaaaagaactggaggacttgaaacaaaagctaagagtacgtggacacaagagaggcaggcctgtggcatgcaacactacagctgaagcaaggaggacagagttgcttgtgttgccaatagttggcatgggaggtgtcgggaagacaaccatggcccaacaaatctgtgtggatggagtggtgcggaatcacttcaacaactgcataatttggatatgtgtctcggatgaattcgaggtaaacaggttaacaagagatgttctgaagtctcttggagtaaagttacaagattctgatacaagggatactcttatggttaatttacgtgatagtgtcaagtcaaagaagtttttactcgtccttgatgacatgtgggatgatgtcttaaaagatgagaaaggatggagaacatttcatagaactttaagcaatggtcttgagggcagtatgattttggtcaccactagatcttccaaggttgctaacctagtcagcaacagtaatcactatgaactgaagggattgcaacatggtgttttctggaatttcttcaaactatgtgcattcggatccgtccagagttggagcaacagttgtcgcaacaggccagagctggagcgcattggtgaagctatacttcccaagttgaagggttcacctttggccgccaaaactcttggacacttattgaaaagcaacctaagcatagagcactgggaggacatattgaaaagtgagctatggcgattagaacaagaggagactgacattttgccagcccttcgactaagttacgtttacctgccacaggacataaaaagatgcttctcaatctgtgccatgtatccaaaggatcacaaatttgaaaaggattttctagcagatatttcggtagcacaaggttatgtggagcttgaaaatgcaccctcttgctttgatgaccttttaaatcggtcattctttcagaaagcagctggtgagcatggtacgtatgtaattcatgacttgatgcatgatactgcacagctagtctctaaagatgagtgcttcatcatacaacatgtaagtgacctagctaaaatcccttcaaaggttcgccatctgtcaatattcactactgaaaatatcagctgtgcagaattagtgaatatttgcacacacaataaaaaactgcggtccctagtatgcaatgaatcttaccgaagtggtaaacattttgctcctgtgattgactgtttgttcaaggaactcctgaatatccgtgtattgatttttaatctttcaacagtgagaaagtttttttttgcggggaacagtgagaaagttacctgagagcataagcaactcaaaacatttgcgttaccttggcttattcggaagttctacttttgagacccttccttcatctgttagctgcctctatcatttccagacaataaatgccaagggctgtgttttcaaaagatatcctcaaggtttcagtgatctgatttccttaaagaaaattgaatcataa
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| CDS seq | atgcatgacctcatcgaccgccttgagtggcatagccacaaagaaacagaagctgggcaccttcgccagataaaggatgtagtgtacgatgccgaggacctccttgatgagtacaattattatgctctcaaggtgaaggtgaaggcgagcaagaatttagggcaagatcacttgcatgaaccctttttggagttcttgggcaatgttaacttcagtggcaaattcaggaaagtgatggaaatccaagaaagactgaagcatgtttttgaccaatctaacagtttaggcttgcacaaaacacccaagaagtttgacaaaattgtcagaccagagacatgtcatgtcctcgacgagccagatgagatttttggtcgtgaaaaagaactggaggacttgaaacaaaagctaagagtacgtggacacaagagaggcaggcctgtggcatgcaacactacagctgaagcaaggaggacagagttgcttgtgttgccaatagttggcatgggaggtgtcgggaagacaaccatggcccaacaaatctgtgtggatggagtggtgcggaatcacttcaacaactgcataatttggatatgtgtctcggatgaattcgaggtaaacaggttaacaagagatgttctgaagtctcttggagtaaagttacaagattctgatacaagggatactcttatggttaatttacgtgatagtgtcaagtcaaagaagtttttactcgtccttgatgacatgtgggatgatgtcttaaaagatgagaaaggatggagaacatttcatagaactttaagcaatggtcttgagggcagtatgattttggtcaccactagatcttccaaggttgctaacctagtcagcaacagtaatcactatgaactgaagggattgcaacatggtgttttctggaatttcttcaaactatgtgcattcggatccgtccagagttggagcaacagttgtcgcaacaggccagagctggagcgcattggtgaagctatacttcccaagttgaagggttcacctttggccgccaaaactcttggacacttattgaaaagcaacctaagcatagagcactgggaggacatattgaaaagtgagctatggcgattagaacaagaggagactgacattttgccagcccttcgactaagttacgtttacctgccacaggacataaaaagatgcttctcaatctgtgccatgtatccaaaggatcacaaatttgaaaaggattttctagcagatatttcggtagcacaaggttatgtggagcttgaaaatgcaccctcttgctttgatgaccttttaaatcggtcattctttcagaaagcagctggtgagcatggtacgtatgtaattcatgacttgatgcatgatactgcacagctagtctctaaagatgagtgcttcatcatacaacatgtaagtgacctagctaaaatcccttcaaaggttcgccatctgtcaatattcactactgaaaatatcagctgtgcagaattagtgaatatttgcacacacaataaaaaactgcggtccctagtatgcaatgaatcttaccgaagtggtaaacattttgctcctgtgattgactgtttgttcaaggaactcctgaatatcctgagaaagttacctgagagcataagcaactcaaaacatttgcgttaccttggcttattcggaagttctacttttgagacccttccttcatctgttagctgcctctatcatttccagacaataaatgccaagggctgtgttttcaaaagatatcctcaaggtttcagtgatctgatttccttaaagaaaattgaatcataa
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| Protein seq | MHDLIDRLEWHSHKETEAGHLRQIKDVVYDAEDLLDEYNYYALKVKVKASKNLGQDHLHEPFLEFLGNVNFSGKFRKVMEIQERLKHVFDQSNSLGLHKTPKKFDKIVRPETCHVLDEPDEIFGREKELEDLKQKLRVRGHKRGRPVACNTTAEARRTELLVLPIVGMGGVGKTTMAQQICVDGVVRNHFNNCIIWICVSDEFEVNRLTRDVLKSLGVKLQDSDTRDTLMVNLRDSVKSKKFLLVLDDMWDDVLKDEKGWRTFHRTLSNGLEGSMILVTTRSSKVANLVSNSNHYELKGLQHGVFWNFFKLCAFGSVQSWSNSCRNRPELERIGEAILPKLKGSPLAAKTLGHLLKSNLSIEHWEDILKSELWRLEQEETDILPALRLSYVYLPQDIKRCFSICAMYPKDHKFEKDFLADISVAQGYVELENAPSCFDDLLNRSFFQKAAGEHGTYVIHDLMHDTAQLVSKDECFIIQHVSDLAKIPSKVRHLSIFTTENISCAELVNICTHNKKLRSLVCNESYRSGKHFAPVIDCLFKELLNILRKLPESISNSKHLRYLGLFGSSTFETLPSSVSCLYHFQTINAKGCVFKRYPQGFSDLISLKKIES |
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| Function | Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0011070 | OsKeNa_04g0011070.01 | Chr04 | 16874130 | 16876020 | + | NAM | ||
| CDS seq | atgcatgacctcatcgaccgccttgagtggcatagccacaaagaaacagaagctgggcaccttcgccagataaaggatgtagtgtacgatgccgaggacctccttgatgagtacaattattatgctctcaaggtgaaggtgaaggcgagcaagaatttagggcaagatcacttgcatgaaccctttttggagttcttgggcaatgttaacttcagtggcaaattcaggaaagtgatggaaatccaagaaagactgaagcatgtttttgaccaatctaacagtttaggcttgcacaaaacacccaagaagtttgacaaaattgtcagaccagagacatgtcatgtcctcgacgagccagatgagatttttggtcgtgaaaaagaactggaggacttgaaacaaaagctaagagtacgtggacacaagagaggcaggcctgtggcatgcaacactacagctgaagcaaggaggacagagttgcttgtgttgccaatagttggcatgggaggtgtcgggaagacaaccatggcccaacaaatctgtgtggatggagtggtgcggaatcacttcaacaactgcataatttggatatgtgtctcggatgaattcgaggtaaacaggttaacaagagatgttctgaagtctcttggagtaaagttacaagattctgatacaagggatactcttatggttaatttacgtgatagtgtcaagtcaaagaagtttttactcgtccttgatgacatgtgggatgatgtcttaaaagatgagaaaggatggagaacatttcatagaactttaagcaatggtcttgagggcagtatgattttggtcaccactagatcttccaaggttgctaacctagtcagcaacagtaatcactatgaactgaagggattgcaacatggtgttttctggaatttcttcaaactatgtgcattcggatccgtccagagttggagcaacagttgtcgcaacaggccagagctggagcgcattggtgaagctatacttcccaagttgaagggttcacctttggccgccaaaactcttggacacttattgaaaagcaacctaagcatagagcactgggaggacatattgaaaagtgagctatggcgattagaacaagaggagactgacattttgccagcccttcgactaagttacgtttacctgccacaggacataaaaagatgcttctcaatctgtgccatgtatccaaaggatcacaaatttgaaaaggattttctagcagatatttcggtagcacaaggttatgtggagcttgaaaatgcaccctcttgctttgatgaccttttaaatcggtcattctttcagaaagcagctggtgagcatggtacgtatgtaattcatgacttgatgcatgatactgcacagctagtctctaaagatgagtgcttcatcatacaacatgtaagtgacctagctaaaatcccttcaaaggttcgccatctgtcaatattcactactgaaaatatcagctgtgcagaattagtgaatatttgcacacacaataaaaaactgcggtccctagtatgcaatgaatcttaccgaagtggtaaacattttgctcctgtgattgactgtttgttcaaggaactcctgaatatcctgagaaagttacctgagagcataagcaactcaaaacatttgcgttaccttggcttattcggaagttctacttttgagacccttccttcatctgttagctgcctctatcatttccagacaataaatgccaagggctgtgttttcaaaagatatcctcaaggtttcagtgatctgatttccttaaagaaaattgaatcataa
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| Protein seq | MHDLIDRLEWHSHKETEAGHLRQIKDVVYDAEDLLDEYNYYALKVKVKASKNLGQDHLHEPFLEFLGNVNFSGKFRKVMEIQERLKHVFDQSNSLGLHKTPKKFDKIVRPETCHVLDEPDEIFGREKELEDLKQKLRVRGHKRGRPVACNTTAEARRTELLVLPIVGMGGVGKTTMAQQICVDGVVRNHFNNCIIWICVSDEFEVNRLTRDVLKSLGVKLQDSDTRDTLMVNLRDSVKSKKFLLVLDDMWDDVLKDEKGWRTFHRTLSNGLEGSMILVTTRSSKVANLVSNSNHYELKGLQHGVFWNFFKLCAFGSVQSWSNSCRNRPELERIGEAILPKLKGSPLAAKTLGHLLKSNLSIEHWEDILKSELWRLEQEETDILPALRLSYVYLPQDIKRCFSICAMYPKDHKFEKDFLADISVAQGYVELENAPSCFDDLLNRSFFQKAAGEHGTYVIHDLMHDTAQLVSKDECFIIQHVSDLAKIPSKVRHLSIFTTENISCAELVNICTHNKKLRSLVCNESYRSGKHFAPVIDCLFKELLNILRKLPESISNSKHLRYLGLFGSSTFETLPSSVSCLYHFQTINAKGCVFKRYPQGFSDLISLKKIES
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0375300 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g30610 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0375300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0010300 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0011100 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0010790 | RBH | 0.0 | 4.016036 | 2.961120 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0010460 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0010700 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0290000 | RBH | 1.1245005 | 18.433896 | 6.161756 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0009720 | RBH | 0.0 | 0.403826 | 0.444865 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0287900 | RBH | 0 | 0.0807435 | 0.071385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0010370 | RBH | 0.025593 | 0.020286 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0009910 | RBH | 0.000000 | 1.958913 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0009970 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0010460 | SBH | 0.143860 | 0.239446 | 0.076712 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0010590 | RBH | 0.042731 | 3.007900 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G009770 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0009800 | RBH | 0.0 | 0.0 | 0.0 |
