Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLiXu_04g0010500 OGI:04057550 | 16/16 LIU XU | Os125827RS1 | Gramene(+IsoSeq) Chr04:19541583-19546395
Gene Symbol rNBS56
DNA seq

tcaagtgtgattccttagcacgtaccagtagcgacctcttgtgaaaggctgtgtcatctccatcagcttggggcaatcatgtatataacccgactgtatttcagagacagatatagcaccaacaatagagatgaggtctggacagctaataagtttcaggttgagtcccttgagtgtcacagaactcgccagatggctgttgtcgatgaactctatgcttggacaaccgagtaaactgagcttccgaagagaggatggtaatgtcattatcctccgtgtattcaaattgggacatgattcaatacgtagcacctccaagcaagaaaagcgatgaagctcatcaatcggcagtaatgctaattgtcgacaactttccacaagaatggtcttcacgacgggcatataagcaggcatcaggaactcatcaagactcaacagtgcattgcaaagagaaatggtgacacttgaaagggatgaaaatactccaacagggtgcctgctgcttgcctctgagacatagatggatgtgagggagctacactgataaatatgcaaatcctccaaggcttgaagattatttttacaaacttgcaggggaatagacattaagaattcacactgtatttgcagacatttcaggagaacgaggccacgaaagcaactcacaaagtgatccgtcgaatggccaaagtttccaaggataatctttctaagagaagaaggtaaagccaccaaaccttgccaattgatgttaggacaatgttggatatccaacacctcaaggtgacaaatgttctttgaatcttccgaatcaggaaagagtgggtcaaagaatgatatgctctgaatgttcttgcaataagaaagtttaagtgaagtcagcattttcaggcagtctggccggagccaactggggcaagattgacccaggtaatactctattgtcaaatgctgaaggttccaatgaggtaacaattcaatctgctcctctgtcatctgtaactgttcttcaggtgtcagtggcagagccaggtttggagcatagggggggctcagccttgttctggcttcgcccctgtcaggtgtttgcattatgggccaccttaggcattgcttatctttatccttattatatatgaagccatttgattcaattttctttaaggaaataagatcactaaaaccttgaggatatcttttgaaaacacaacccttggcatttatagtctggacatgatacaggcagctaacagatgaaggaagggtctcaaaagtagaatttcctaataaaccaaggtagcgcaaatgtattgagttgcctatgctctcaggtagctttctgacagtcgaaagatcaaaactcaatacacggatattcaaaagttccttgaaccaaccgtcaatcatgggagcaaaaggttcccaatttatgtaagaatcattgcatactagggaacgcaattttttattttgtgcgcaaatatacagtaaatctgaacatctgatatttccattagtgaatattgatagatggcgtacctttggagggattttagctaggtcacttacatgttgtatgatgaagcactcatccttagagactagttgtgctgtatcatgtagcaaatcatgaattacatactgattatcatattggtgggctgcttgctgaaagaaggatcggtttacaaggtcatcaaagcaagaggatgcatcttgaggctccacatacccttgtgctacccaaatgtctgctaaaaattccttttgaaatatgtgatcctttggatatatagcacagattgagaagcatcttttcatgtactgtggcaggtacgcatagcttagtcgaagggccggcaaaatgtcagtctcctcttgttctaatcgccacagctcacttttcaatatgtcttcccagtgctctatgcttcggttgcatttcaacaatcgtccaagagttttggcagccaaaggtgaacccttcaacttgggaagtatagctctaccaatgcgctccaattctggacgaatgcgctgcaactctggcctgttgctccaactctggacagatccaaatgcacatagtttgaagaaattccagaaaaccccatcttgcaatcctttcagctcatagtgattaccgtcgctgactaagttagcaaccttggaagatctagtggtgaccaaaatcatactgccatcaagaccattgcttaaagttctatgaaatgttctccatcctttctcatcctttaagacatcatcccacatgtcatcaaggacgagcaaaaacttctttgacttgacactatcacgtaaattaaccataagattatcccttgtatcggtatcttctgacttgactccaagagacttcagagcatcttttgttaacctgtttacctcaaattcatctgagacacatatccagattatgcggtgatgaaaatgtttgcgcacctctggatcctcacagatttgttgggccatagttgtcttgccgacacctcccatgccaactattggcaacacaggcaactccatccttcttgcttcagtagtgttagtgtgtgctgcaggcctgcctctcttgtgtccatctactcctagcatttgcatcaactccttcagttcttgctcacgaccaaatatctgtgactcatcaaggacacggcatgtctctggcctgactaatcgatcaaacttcttgggtgttttgtgcaagcctaaacccatggattggtcgaaaacatgcttcagtctgtcttggatttccatcactttgctgaagttgccattgaagttgacactgtccaagaactctaaaaagggtccatgtgagtgatcttgccccaagttcttgctcgcctccactttcaccttaagagcatagtaattgtactcatcaaggaggtcctcggcatcatacactgcatccttgatctggcgaaggtgcctggcttctgtttccctgtggctatgccactcaaggcggtcgatgagatcatgcatcgtggatgtaatagttgtttggatcacccaaaggttgtgctcgagtttctgaagatcatcctgaatctgatgcagtggagctgttctgttgtttccagttgatgctgatactggccctcctgaatccagttgcagcagctgctgctgctgttgagaacgtacggcagctaagacgtgtggtgtgacccagtggaagaattcacggaatgcattggcgtcagcagcaacaccagctactcccctcaatattccgacgaccttgtccatagccagattgagcactgctgcatgatcataagtgctaaactgttaagagttccagagatgcatcatggaaaagctagatttactgtatctagtggttgaaggcaaacctaacacctatctatctaccattcaaaaaacaatttgcttttaaagtctagcaaattatgccgggtctactgtatctagtggttgaaggcacatgatttctcaggaaattcgactagttttggttaaagcaacatgcaagacaaaacacacaattttgaaatcttgttctaacattacttgtctagtacaaaactgaagagcaacacaaaaggctacaacatgcagtctgcctggacatctaaatgtataattgtatttcatacaactatatctcaaataggcacataatttctctggaagttcgactagtcgtagtgaaagaaacatgtaagacagcaagcacagtttgaaattttgttctaagcttactagtacagtataaaatcaaccagaacacaagaaattgcaacatgcagactttgtctacaattggaaaataacagtttctgctgacaattgtagtatatctgatactccaaacataccaagctggagtaaagaagggaaataattggatcacgtacctgggtccttaatttgtttcacaaatctttctacccaatgatcagactacctagccagctcctcttcttgatcttgctcttcttgatgtcttttatgagcaaagcaatcacatgtttgttcaaaaaaatgttagatcaatatgaatagagattagataggatcacaggaaagagagtgcagatgcgctagttccagatagagtaccaatttcgtctcccaaaaattaaacgaagagcgctaactgaaatttagaagagtacagccccaaatttcagttagttctttccttatgtagaagaaggggctcaactcacttttggggccatacgctgcatccacacaaaagtgctcagctaaccttctgggaaattactaaaaggtacccaggatgttccatttttgtgccaaaaggacaaaaaagaaaattaaaataaaaaagaaaaggggccactaatagctgtcccattcagtccatatacttaactcaccactcagctttattccatactcttaccttttgaaatgaagttgtccatagcatggtatcatggggttatcattatagttattactagttggacaatatattaacattttgcttacaaaaagtggtgcctccccattggagtttttggtgcctaacaagatccgttcccaaagaatggtagctgaggcaccactggacataagatggatcaaattaagaggccattttggaatacccctgcatctgggaactaatgagcagtttttgttgtagaagttgacatccctgatgtgcctatacggcgctggtagccttcacttcaggagaatccagcgcatgctccgcacacgagcacctgttcaatggtcgaataaggttttgttgttgcacaccagtttgcacctctcccat

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CDS seq

atgggagaggtgcaaactggtgtgcaacaacaaaaccttattcgaccattgaacaggtgctcgtgtgcggagcatgcgctggattctcctgaagtgaaggctaccagcgcctttagcacttatgatcatgcagcagtgctcaatctggctatggacaaggtcgtcggaatattgaggggagtagctggtgttgctgctgacgccaatgcattccgtgaattcttccactgggtcacaccacacgtcttagctgccgtacgttctcaacagcagcagcagctgctgcaactggattcaggagggccagtatcagcatcaactggaaacaacagaacagctccactgcatcagattcaggatgatcttcagaaactcgagcacaacctttgggtgatccaaacaactattacatccacgatgcatgatctcatcgaccgccttgagtggcatagccacagggaaacagaagccaggcaccttcgccagatcaaggatgcagtgtatgatgccgaggacctccttgatgagtacaattactatgctcttaaggtgaaagtggaggcgagcaagaacttggggcaagatcactcacatggaccctttttagagttcttggacagtgtcaacttcaatggcaacttcagcaaagtgatggaaatccaagacagactgaagcatgttttcgaccaatccatgggtttaggcttgcacaaaacacccaagaagtttgatcgattagtcaggccagagacatgccgtgtccttgatgagtcacagatatttggtcgtgagcaagaactgaaggagttgatgcaaatgctaggagtagatggacacaagagaggcaggcctgcagcacacactaacactactgaagcaagaaggatggagttgcctgtgttgccaatagttggcatgggaggtgtcggcaagacaactatggcccaacaaatctgtgaggatccagaggtgcgcaaacattttcatcaccgcataatctggatatgtgtctcagatgaatttgaggtaaacaggttaacaaaagatgctctgaagtctcttggagtcaagtcagaagataccgatacaagggataatcttatggttaatttacgtgatagtgtcaagtcaaagaagtttttgctcgtccttgatgacatgtgggatgatgtcttaaaggatgagaaaggatggagaacatttcatagaactttaagcaatggtcttgatggcagtatgattttggtcaccactagatcttccaaggttgctaacttagtcagcgacggtaatcactatgagctgaaaggattgcaagatggggttttctggaatttcttcaaactatgtgcatttggatctgtccagagttggagcaacaggccagagttgcagcgcattcgtccagaattggagcgcattggtagagctatacttcccaagttgaagggttcacctttggctgccaaaactcttggacgattgttgaaatgcaaccgaagcatagagcactgggaagacatattgaaaatatgcaatgattcttacataaattgggaaccttttgctcccatgattgacggttggttcaaggaacttttgaatatccgtgtattgagttttgatctttcgactgtcagaaagctacctgagagcataggcaactcaatacatttgcgctaccttggtttattaggaaattctacttttgagacccttccttcatctgttagctgcctgtatcatgtccagactataaatgccaagggttgtgttttcaaaagatatcctcaaggttttagtgatcttatttccttaaagaaaattgaatcaaatggcttcatatataataaggataaagataagcaatgcctaaggtggcccataatgcaaacacctgacaggggcgaagccagaacaaggctgagccccccctatgctccaaacctggctctgccactgacacctgaagaacagttacagatgacagaggagcagattgaattgttacctcattggaaccttcagcatttgacaatagagtattacctgggtcaatcttgccccagttggctccggccagactgcctgaaaatgctgacttcacttaaactttcttattgcaagaacattcagagcatatcattctttgacccactctttcctgattcggaagattcaaagaacatttgtcaccttgaggtgttggatatccaacattgtcctaacatcaattggcaaggtttggtggctttaccttcttctcttagaaagattatccttggaaactttggccattcgacggatcactttgtgagttgctttcgtggcctcgttctcctgaaatgtctgcaaatacagtgtgaattcttaatgtctattcccctgcaagtttgtaaaaataatcttcaagccttggaggatttgcatatttatcagtgtagctccctcacatccatctatgtctcagaggcaagcagcaggcaccctgttggagtattttcatccctttcaagtgtcaccatttctctttgcaatgcactgttgagtcttgatgagttcctgatgcctgcttatatgcccgtcgtgaagaccattcttgtggaaagttgtcgacaattagcattactgccgattgatgagcttcatcgcttttcttgcttggaggtgctacgtattgaatcatgtcccaatttgaatacacggaggataatgacattaccatcctctcttcggaagctcagtttactcggttgtccaagcatagagttcatcgacaacagccatctggcgagttctgtgacactcaagggactcaacctgaaacttattagctgtccagacctcatctctattgttggtgctatatctgtctctgaaatacagtcgggttatatacatgattgccccaagctgatggagatgacacagcctttcacaagaggtcgctactggtacgtgctaaggaatcacacttga

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Protein seq

MGEVQTGVQQQNLIRPLNRCSCAEHALDSPEVKATSAFSTYDHAAVLNLAMDKVVGILRGVAGVAADANAFREFFHWVTPHVLAAVRSQQQQQLLQLDSGGPVSASTGNNRTAPLHQIQDDLQKLEHNLWVIQTTITSTMHDLIDRLEWHSHRETEARHLRQIKDAVYDAEDLLDEYNYYALKVKVEASKNLGQDHSHGPFLEFLDSVNFNGNFSKVMEIQDRLKHVFDQSMGLGLHKTPKKFDRLVRPETCRVLDESQIFGREQELKELMQMLGVDGHKRGRPAAHTNTTEARRMELPVLPIVGMGGVGKTTMAQQICEDPEVRKHFHHRIIWICVSDEFEVNRLTKDALKSLGVKSEDTDTRDNLMVNLRDSVKSKKFLLVLDDMWDDVLKDEKGWRTFHRTLSNGLDGSMILVTTRSSKVANLVSDGNHYELKGLQDGVFWNFFKLCAFGSVQSWSNRPELQRIRPELERIGRAILPKLKGSPLAAKTLGRLLKCNRSIEHWEDILKICNDSYINWEPFAPMIDGWFKELLNIRVLSFDLSTVRKLPESIGNSIHLRYLGLLGNSTFETLPSSVSCLYHVQTINAKGCVFKRYPQGFSDLISLKKIESNGFIYNKDKDKQCLRWPIMQTPDRGEARTRLSPPYAPNLALPLTPEEQLQMTEEQIELLPHWNLQHLTIEYYLGQSCPSWLRPDCLKMLTSLKLSYCKNIQSISFFDPLFPDSEDSKNICHLEVLDIQHCPNINWQGLVALPSSLRKIILGNFGHSTDHFVSCFRGLVLLKCLQIQCEFLMSIPLQVCKNNLQALEDLHIYQCSSLTSIYVSEASSRHPVGVFSSLSSVTISLCNALLSLDEFLMPAYMPVVKTILVESCRQLALLPIDELHRFSCLEVLRIESCPNLNTRRIMTLPSSLRKLSLLGCPSIEFIDNSHLASSVTLKGLNLKLISCPDLISIVGAISVSEIQSGYIHDCPKLMEMTQPFTRGRYWYVLRNHT

Function Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLiXu_04g0010500 OsLiXu_04g0010500.01 Chr04 19541583 19546395 - NAM
CDS seq

atgggagaggtgcaaactggtgtgcaacaacaaaaccttattcgaccattgaacaggtgctcgtgtgcggagcatgcgctggattctcctgaagtgaaggctaccagcgcctttagcacttatgatcatgcagcagtgctcaatctggctatggacaaggtcgtcggaatattgaggggagtagctggtgttgctgctgacgccaatgcattccgtgaattcttccactgggtcacaccacacgtcttagctgccgtacgttctcaacagcagcagcagctgctgcaactggattcaggagggccagtatcagcatcaactggaaacaacagaacagctccactgcatcagattcaggatgatcttcagaaactcgagcacaacctttgggtgatccaaacaactattacatccacgatgcatgatctcatcgaccgccttgagtggcatagccacagggaaacagaagccaggcaccttcgccagatcaaggatgcagtgtatgatgccgaggacctccttgatgagtacaattactatgctcttaaggtgaaagtggaggcgagcaagaacttggggcaagatcactcacatggaccctttttagagttcttggacagtgtcaacttcaatggcaacttcagcaaagtgatggaaatccaagacagactgaagcatgttttcgaccaatccatgggtttaggcttgcacaaaacacccaagaagtttgatcgattagtcaggccagagacatgccgtgtccttgatgagtcacagatatttggtcgtgagcaagaactgaaggagttgatgcaaatgctaggagtagatggacacaagagaggcaggcctgcagcacacactaacactactgaagcaagaaggatggagttgcctgtgttgccaatagttggcatgggaggtgtcggcaagacaactatggcccaacaaatctgtgaggatccagaggtgcgcaaacattttcatcaccgcataatctggatatgtgtctcagatgaatttgaggtaaacaggttaacaaaagatgctctgaagtctcttggagtcaagtcagaagataccgatacaagggataatcttatggttaatttacgtgatagtgtcaagtcaaagaagtttttgctcgtccttgatgacatgtgggatgatgtcttaaaggatgagaaaggatggagaacatttcatagaactttaagcaatggtcttgatggcagtatgattttggtcaccactagatcttccaaggttgctaacttagtcagcgacggtaatcactatgagctgaaaggattgcaagatggggttttctggaatttcttcaaactatgtgcatttggatctgtccagagttggagcaacaggccagagttgcagcgcattcgtccagaattggagcgcattggtagagctatacttcccaagttgaagggttcacctttggctgccaaaactcttggacgattgttgaaatgcaaccgaagcatagagcactgggaagacatattgaaaatatgcaatgattcttacataaattgggaaccttttgctcccatgattgacggttggttcaaggaacttttgaatatccgtgtattgagttttgatctttcgactgtcagaaagctacctgagagcataggcaactcaatacatttgcgctaccttggtttattaggaaattctacttttgagacccttccttcatctgttagctgcctgtatcatgtccagactataaatgccaagggttgtgttttcaaaagatatcctcaaggttttagtgatcttatttccttaaagaaaattgaatcaaatggcttcatatataataaggataaagataagcaatgcctaaggtggcccataatgcaaacacctgacaggggcgaagccagaacaaggctgagccccccctatgctccaaacctggctctgccactgacacctgaagaacagttacagatgacagaggagcagattgaattgttacctcattggaaccttcagcatttgacaatagagtattacctgggtcaatcttgccccagttggctccggccagactgcctgaaaatgctgacttcacttaaactttcttattgcaagaacattcagagcatatcattctttgacccactctttcctgattcggaagattcaaagaacatttgtcaccttgaggtgttggatatccaacattgtcctaacatcaattggcaaggtttggtggctttaccttcttctcttagaaagattatccttggaaactttggccattcgacggatcactttgtgagttgctttcgtggcctcgttctcctgaaatgtctgcaaatacagtgtgaattcttaatgtctattcccctgcaagtttgtaaaaataatcttcaagccttggaggatttgcatatttatcagtgtagctccctcacatccatctatgtctcagaggcaagcagcaggcaccctgttggagtattttcatccctttcaagtgtcaccatttctctttgcaatgcactgttgagtcttgatgagttcctgatgcctgcttatatgcccgtcgtgaagaccattcttgtggaaagttgtcgacaattagcattactgccgattgatgagcttcatcgcttttcttgcttggaggtgctacgtattgaatcatgtcccaatttgaatacacggaggataatgacattaccatcctctcttcggaagctcagtttactcggttgtccaagcatagagttcatcgacaacagccatctggcgagttctgtgacactcaagggactcaacctgaaacttattagctgtccagacctcatctctattgttggtgctatatctgtctctgaaatacagtcgggttatatacatgattgccccaagctgatggagatgacacagcctttcacaagaggtcgctactggtacgtgctaaggaatcacacttga

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Protein seq

MGEVQTGVQQQNLIRPLNRCSCAEHALDSPEVKATSAFSTYDHAAVLNLAMDKVVGILRGVAGVAADANAFREFFHWVTPHVLAAVRSQQQQQLLQLDSGGPVSASTGNNRTAPLHQIQDDLQKLEHNLWVIQTTITSTMHDLIDRLEWHSHRETEARHLRQIKDAVYDAEDLLDEYNYYALKVKVEASKNLGQDHSHGPFLEFLDSVNFNGNFSKVMEIQDRLKHVFDQSMGLGLHKTPKKFDRLVRPETCRVLDESQIFGREQELKELMQMLGVDGHKRGRPAAHTNTTEARRMELPVLPIVGMGGVGKTTMAQQICEDPEVRKHFHHRIIWICVSDEFEVNRLTKDALKSLGVKSEDTDTRDNLMVNLRDSVKSKKFLLVLDDMWDDVLKDEKGWRTFHRTLSNGLDGSMILVTTRSSKVANLVSDGNHYELKGLQDGVFWNFFKLCAFGSVQSWSNRPELQRIRPELERIGRAILPKLKGSPLAAKTLGRLLKCNRSIEHWEDILKICNDSYINWEPFAPMIDGWFKELLNIRVLSFDLSTVRKLPESIGNSIHLRYLGLLGNSTFETLPSSVSCLYHVQTINAKGCVFKRYPQGFSDLISLKKIESNGFIYNKDKDKQCLRWPIMQTPDRGEARTRLSPPYAPNLALPLTPEEQLQMTEEQIELLPHWNLQHLTIEYYLGQSCPSWLRPDCLKMLTSLKLSYCKNIQSISFFDPLFPDSEDSKNICHLEVLDIQHCPNINWQGLVALPSSLRKIILGNFGHSTDHFVSCFRGLVLLKCLQIQCEFLMSIPLQVCKNNLQALEDLHIYQCSSLTSIYVSEASSRHPVGVFSSLSSVTISLCNALLSLDEFLMPAYMPVVKTILVESCRQLALLPIDELHRFSCLEVLRIESCPNLNTRRIMTLPSSLRKLSLLGCPSIEFIDNSHLASSVTLKGLNLKLISCPDLISIVGAISVSEIQSGYIHDCPKLMEMTQPFTRGRYWYVLRNHT

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.240410 0.075803

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0375300 SBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g30540 RBH 0.0 0.0 0.281331
Nipponbare | IRGSP 1.0 | RAP-db Os04g0375300 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0010260 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0011030 RBH 0.0 1.146490 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0010760 RBH 0.0 0.000000 0.887001
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0010420 RBH 0.0 0.167556 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0010660 RBH 0.0 6.988861 2.003840
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0291000 RBH 0.257941 7.2520125 1.581491
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0009760 RBH 0.0 0.161042 0.164329
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0287200 RBH 0.2868015 4.416922 0.833863
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0010340 RBH 0.027809 0.040788 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0009950 RBH 0.0 3.308577 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0010010 RBH 0.0 8.471335 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_02g0018120 SBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0010550 RBH 0.0 2.093125 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G009730 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0009760 RBH 0.0 0.0 1.113880
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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