Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_04g0010420 | OGI:04057550 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr04:16922879-16924285 | ||||||||
| Gene Symbol | rNBS56 | ||||||||||
| DNA seq | ATGATTGACGGTTGGTTCAATGAACTTTTGAATATCCGTGTATTGAGTTTTGATCTTTCGACTGTCAGAAAGCTACCTGAGAGCATAGGCAACTCAATACATTTGCGCTACCTTGGTTTATTAGGAAATTCTACTTTTGAGACCCTTCCTTCATCTGTTAGCTGCCTGTATCATGTCCAGACTATAAATGCCAAGGGTTGTGTTTTCAAAAGATATCCTCAAGGTTTTAGTGATCTTATTTCCTTAAAGAAAATTGAATCAAAGGGCTTCATATATAATAAGGATAAAGATAAGCAATGCCTAAGGTGGCCCATAATGCGAACACCTGACAGGGGCGAAGCCAGAACAAGGCTGAGCCCCCCCTATGCTCCAAACCTGGCTCTGCCACTGACACCTGAAGAACAGTTACAGATGACAGAGGAGCAGATTGAATTGTTACCTCATTGGAACCTTCAGCATTTGACAATAGAGTATTACCTGGGTCAATCTTGCCCCAGTTGGCTCCGGCCAGACTGCCTGAAAATGCTGACTTCACTTAAACTTTCTTATTGCAAGAACATTCAGAGCATATCATTCTTTGACCCACTCTTTCCTGATTCGGAAGATTCAAAGAACATTTGTCACCTTGAGGTGTTGGATATCCAACATTGTCCTAACATCAATTGGCAAGGTTTGGTGGCTTTACCTTCTTCTCTTAGAAAGATTATCCTTGGAAACTTTGGCCATTCGACGGATCACTTTGTGAGTTGCTTTTGTGGCCTCGCTCTCCTGAAATGTCTGCAAATACAGTGTGAATTCTTAATGTCTATTCCCCTGCAAGTTTGTAAAAATAATCTTCAAGCCTTGGAGGATTTGCATATTTATCAGTGTAGCTCCCTCACATCCATCTATGTCTCAGAGGCAAGCAGCAGGCACCCTGTTGGAGTATTTTCATCCCTTTCAAGTGTCACCATTTCTCTTTGCAATGCACTGTTGAGTCTTGATGAGTTCCTGATGCCTGCTTATATGCCCGTCGTGAAGACCATTCTTGTGGAAAGTTGTCGACAATTAGCATTACTGCCGATTGATGAGCTTCATCGCTTTTCTTGCTTGGAGGTGCTACGTATTGAATCATGTCCCAATTTGAATACACGGAGGATAATGACATTACCATCCTCTCTTCGGAAGCTCAGTTTACTCGGTTGTCCAAGCATAGAGTTCATCGACAACAGCCATCTGGCGAGTTCTGTGACACTCAAGGGACTCAACCTGAAACTTGTTAGCTGTCCAGACCTCATCTCTATTGTTGGTGCTATATCTATCTCTGAAATACAGTCGGGTTATATACATGATTGCCCCAAGCTGATGGAGATGACACAGCCTTTCACAAGAGGTCGCTACTGGTACGTGCTAAGGAATCACACTTGA
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| CDS seq | ATGATTGACGGTTGGTTCAATGAACTTTTGAATATCCGTGTATTGAGTTTTGATCTTTCGACTGTCAGAAAGCTACCTGAGAGCATAGGCAACTCAATACATTTGCGCTACCTTGGTTTATTAGGAAATTCTACTTTTGAGACCCTTCCTTCATCTGTTAGCTGCCTGTATCATGTCCAGACTATAAATGCCAAGGGTTGTGTTTTCAAAAGATATCCTCAAGGTTTTAGTGATCTTATTTCCTTAAAGAAAATTGAATCAAAGGGCTTCATATATAATAAGGATAAAGATAAGCAATGCCTAAGGTGGCCCATAATGCGAACACCTGACAGGGGCGAAGCCAGAACAAGGCTGAGCCCCCCCTATGCTCCAAACCTGGCTCTGCCACTGACACCTGAAGAACAGTTACAGATGACAGAGGAGCAGATTGAATTGTTACCTCATTGGAACCTTCAGCATTTGACAATAGAGTATTACCTGGGTCAATCTTGCCCCAGTTGGCTCCGGCCAGACTGCCTGAAAATGCTGACTTCACTTAAACTTTCTTATTGCAAGAACATTCAGAGCATATCATTCTTTGACCCACTCTTTCCTGATTCGGAAGATTCAAAGAACATTTGTCACCTTGAGGTGTTGGATATCCAACATTGTCCTAACATCAATTGGCAAGGTTTGGTGGCTTTACCTTCTTCTCTTAGAAAGATTATCCTTGGAAACTTTGGCCATTCGACGGATCACTTTGTGAGTTGCTTTTGTGGCCTCGCTCTCCTGAAATGTCTGCAAATACAGTGTGAATTCTTAATGTCTATTCCCCTGCAAGTTTGTAAAAATAATCTTCAAGCCTTGGAGGATTTGCATATTTATCAGTGTAGCTCCCTCACATCCATCTATGTCTCAGAGGCAAGCAGCAGGCACCCTGTTGGAGTATTTTCATCCCTTTCAAGTGTCACCATTTCTCTTTGCAATGCACTGTTGAGTCTTGATGAGTTCCTGATGCCTGCTTATATGCCCGTCGTGAAGACCATTCTTGTGGAAAGTTGTCGACAATTAGCATTACTGCCGATTGATGAGCTTCATCGCTTTTCTTGCTTGGAGGTGCTACGTATTGAATCATGTCCCAATTTGAATACACGGAGGATAATGACATTACCATCCTCTCTTCGGAAGCTCAGTTTACTCGGTTGTCCAAGCATAGAGTTCATCGACAACAGCCATCTGGCGAGTTCTGTGACACTCAAGGGACTCAACCTGAAACTTGTTAGCTGTCCAGACCTCATCTCTATTGTTGGTGCTATATCTATCTCTGAAATACAGTCGGGTTATATACATGATTGCCCCAAGCTGATGGAGATGACACAGCCTTTCACAAGAGGTCGCTACTGGTACGTGCTAAGGAATCACACTTGA
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| Protein seq | MIDGWFNELLNIRVLSFDLSTVRKLPESIGNSIHLRYLGLLGNSTFETLPSSVSCLYHVQTINAKGCVFKRYPQGFSDLISLKKIESKGFIYNKDKDKQCLRWPIMRTPDRGEARTRLSPPYAPNLALPLTPEEQLQMTEEQIELLPHWNLQHLTIEYYLGQSCPSWLRPDCLKMLTSLKLSYCKNIQSISFFDPLFPDSEDSKNICHLEVLDIQHCPNINWQGLVALPSSLRKIILGNFGHSTDHFVSCFCGLALLKCLQIQCEFLMSIPLQVCKNNLQALEDLHIYQCSSLTSIYVSEASSRHPVGVFSSLSSVTISLCNALLSLDEFLMPAYMPVVKTILVESCRQLALLPIDELHRFSCLEVLRIESCPNLNTRRIMTLPSSLRKLSLLGCPSIEFIDNSHLASSVTLKGLNLKLVSCPDLISIVGAISISEIQSGYIHDCPKLMEMTQPFTRGRYWYVLRNHT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_04g0010420 | OsARC_04g0010420.01 | Chr04 | 16922879 | 16924285 | + | NAM | ||
| CDS seq | ATGATTGACGGTTGGTTCAATGAACTTTTGAATATCCGTGTATTGAGTTTTGATCTTTCGACTGTCAGAAAGCTACCTGAGAGCATAGGCAACTCAATACATTTGCGCTACCTTGGTTTATTAGGAAATTCTACTTTTGAGACCCTTCCTTCATCTGTTAGCTGCCTGTATCATGTCCAGACTATAAATGCCAAGGGTTGTGTTTTCAAAAGATATCCTCAAGGTTTTAGTGATCTTATTTCCTTAAAGAAAATTGAATCAAAGGGCTTCATATATAATAAGGATAAAGATAAGCAATGCCTAAGGTGGCCCATAATGCGAACACCTGACAGGGGCGAAGCCAGAACAAGGCTGAGCCCCCCCTATGCTCCAAACCTGGCTCTGCCACTGACACCTGAAGAACAGTTACAGATGACAGAGGAGCAGATTGAATTGTTACCTCATTGGAACCTTCAGCATTTGACAATAGAGTATTACCTGGGTCAATCTTGCCCCAGTTGGCTCCGGCCAGACTGCCTGAAAATGCTGACTTCACTTAAACTTTCTTATTGCAAGAACATTCAGAGCATATCATTCTTTGACCCACTCTTTCCTGATTCGGAAGATTCAAAGAACATTTGTCACCTTGAGGTGTTGGATATCCAACATTGTCCTAACATCAATTGGCAAGGTTTGGTGGCTTTACCTTCTTCTCTTAGAAAGATTATCCTTGGAAACTTTGGCCATTCGACGGATCACTTTGTGAGTTGCTTTTGTGGCCTCGCTCTCCTGAAATGTCTGCAAATACAGTGTGAATTCTTAATGTCTATTCCCCTGCAAGTTTGTAAAAATAATCTTCAAGCCTTGGAGGATTTGCATATTTATCAGTGTAGCTCCCTCACATCCATCTATGTCTCAGAGGCAAGCAGCAGGCACCCTGTTGGAGTATTTTCATCCCTTTCAAGTGTCACCATTTCTCTTTGCAATGCACTGTTGAGTCTTGATGAGTTCCTGATGCCTGCTTATATGCCCGTCGTGAAGACCATTCTTGTGGAAAGTTGTCGACAATTAGCATTACTGCCGATTGATGAGCTTCATCGCTTTTCTTGCTTGGAGGTGCTACGTATTGAATCATGTCCCAATTTGAATACACGGAGGATAATGACATTACCATCCTCTCTTCGGAAGCTCAGTTTACTCGGTTGTCCAAGCATAGAGTTCATCGACAACAGCCATCTGGCGAGTTCTGTGACACTCAAGGGACTCAACCTGAAACTTGTTAGCTGTCCAGACCTCATCTCTATTGTTGGTGCTATATCTATCTCTGAAATACAGTCGGGTTATATACATGATTGCCCCAAGCTGATGGAGATGACACAGCCTTTCACAAGAGGTCGCTACTGGTACGTGCTAAGGAATCACACTTGA
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| Protein seq | MIDGWFNELLNIRVLSFDLSTVRKLPESIGNSIHLRYLGLLGNSTFETLPSSVSCLYHVQTINAKGCVFKRYPQGFSDLISLKKIESKGFIYNKDKDKQCLRWPIMRTPDRGEARTRLSPPYAPNLALPLTPEEQLQMTEEQIELLPHWNLQHLTIEYYLGQSCPSWLRPDCLKMLTSLKLSYCKNIQSISFFDPLFPDSEDSKNICHLEVLDIQHCPNINWQGLVALPSSLRKIILGNFGHSTDHFVSCFCGLALLKCLQIQCEFLMSIPLQVCKNNLQALEDLHIYQCSSLTSIYVSEASSRHPVGVFSSLSSVTISLCNALLSLDEFLMPAYMPVVKTILVESCRQLALLPIDELHRFSCLEVLRIESCPNLNTRRIMTLPSSLRKLSLLGCPSIEFIDNSHLASSVTLKGLNLKLVSCPDLISIVGAISISEIQSGYIHDCPKLMEMTQPFTRGRYWYVLRNHT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.167556 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0375300 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g30540 | RBH | 0.0 | 0.0 | 0.281331 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0375300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0010260 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0011030 | RBH | 0.0 | 1.146490 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0010760 | RBH | 0.0 | 0.000000 | 0.887001 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0018070 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0010660 | RBH | 0.0 | 6.988861 | 2.003840 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0291000 | RBH | 0.257941 | 7.2520125 | 1.581491 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0009760 | RBH | 0.0 | 0.161042 | 0.164329 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0287300 | RBH | 0.0695155 | 3.9438815 | 0.574054 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0010340 | RBH | 0.027809 | 0.040788 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0009950 | RBH | 0.0 | 3.308577 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0010010 | RBH | 0.0 | 8.471335 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0010500 | RBH | 0.0 | 0.240410 | 0.075803 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0010550 | RBH | 0.0 | 2.093125 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G009730 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0009760 | RBH | 0.0 | 0.0 | 1.113880 |
