Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0003540 | OGI:01056340 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:5103440-5106476 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaaaaatcaccaatactaagatccgctaaaacaaaacgatatcccaaaggaataactaaaaaacttaataaaattgatatgactgctatagatggtccaatgctaaataagggaatatcccctcgggatggcaagatatcctctttaaaaagtagcttagtcccatctgctatagcttgaagcagtcccagggggccagcatattcaggaccaatacgttgttgtatcgatgcggatatttctctttctaaccacacaattacgagtacttctactgtgattcccagtaagagggtcaaaatgggtaggatccatatcagtccatagacttcttttaataattccaagttcaaaaaagaattgatagcttctacctgtaccctgtctattatcattttctattatcatttcaacgataaacttctcccataatgatatctatactaactaatatcgtcatgatatcagccaatttcatttttttgactagctgaggaagaatttgcaaattaataaaaccgggtggacgaattttccatctccaggggaaaagactattatctcctaccagataaattcctaattcaccttttggggcttccactcttgcataaagctcttgctttgacaattcaaaattgggtgaaggttttttaccaagaaatcgatattcaaaatcattccattcggaattctttgctttcttaaagcgtcagacttctaaattctcataagggcccccaggaatattttctacagcctgttgaataattttggttgattccctcgtttcaccgattcgtactaaatagcgtgctaatgaatctccttctttttgccattggactttccaatcgaattgattgtaagactcgtaaagatcaactttatgaagatcccattgtattccagaagctcgtaacatggggcccgataagccccaatttacagcttctccgctaataaaaccaactccctcaactcgttccaaaaaaatgggattctgtgtaataagttgttgatatttaataactcctcgtaaaaaataatcacagatatctaaacatttatcgatccatccataaggcagatcggcagcaactcctccgatgcgaaagtaattatgcatcattcgcaaacctgtagcagcttcaaatagatcgtatattaattctctctctctaaaaatataataaaaaggagtatgcgcaccgagatctgccataaaaggtccaagccataacaagtgagaagctatacggctcaattctaacataattaccctaatatagctggctctttggggtatttgaatattctccaagaattctggtgcatttactgttattgtaggcaaaaaaacctaatagggagtgaggataaagagacttatccatctacaaattctagatgttcaatggacctttgtcaatggaaatacaatggtaagaaaaaaaattagatagaaaaactcaaaaaaataatggcttatgttggattggcacgacataaatccagtcaaaaataggattaagaaagaggcaaattatttctaaatagttagacaacaagggatactagtgatctttaccgattaaccaatttcttgacgctggggttgatcttaaggagataccacttcctcatgaatttatcttgaatcgcgaccttttggctcaactttatcctagttttgacgaaggagcaaccccttttttcaccttgaattggtccaaatatgcagaatttcttagttttcgcagagggctagatccaataaccggcggtctatggtcgagcgatattgcgcaccatcatttagctattgctattcttttcctgatcgcaggtcatatgtataagttcagtagttcctcatagaaaattattgactctagagatatggtaatatggagaagacaaaattgtttgaagcacgcacagaaccggaagcgccccttgtttcaaagagaggaggacgggttattcacatttaatttgatggtcagaggcgaattgaaagctaagcagtggtaactaagacccccgggggaaaatagggatgtctcctaggaccaatacgttgttttatcgatgcggatatttctctttctaaccacacaattatgagtacttctattgtgattcccagtaagatggtcaaaatgggtagaatccatatcagtccatagacttcttttaataattccaagttcgaaaaagaattgatagcttctacctgtaccctgtctattatcatttcaacgatcaacttctcccataatgatatctatactacctaatatcgtcatgatatcagccaatttcatttttttgactagctgaggaagaatttgacatagatctgttactcatattttaaaaattggaatccttaatccaatgcaaaattatgcttcgcgactctgtactcataatccaaatcctatttgttttttggatgcaatttcaattagtctttgggtacaaatcgcgaaaatgcatattcttcctcaatatgctattgagagaaaaaggagtaaatcctttctaagaactaaagttttcatcggaatataaaaaaacttaaggacgccttaagtatatcatttcaaattcaatttttaatagaacgaatcacacttttaccactaaactatacccgcaacatgtaaattatgatactaacgctacccttgacagataaccccaaggggttgtgggtttttttctaccaatgggggctttcccttcaccgcccccatgggggtggtccacagggttcataactacccctcttactacggggcgtttacctagccaacacttagacccggctctacccaaacttttttggttcaccccaacattacccacttgtccgactgttgctaagcagttttgggataccaaacggacctcgccagatggtaatcttatattggccgatttaccttcttttgcaatcagtttcgctatagcacctgctccactatacccctcgtcttctaattccttccattcgaccgaggaatt
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| CDS seq | atgaaccctgtggaccacccccatgggggcggtgaagggaaagcccccattggtagaaaaaaacccacaaccccttggggttatctgtcaagggtagcagagagagaattaatatacgatctatttgaagctgctacaggtttgcgaatgatgcataattactttcgcatcggaggagttgctgccgatctgccttatggatggatcgataaatgtttagatatctgtgattattttttacgaggagttattaaatatcaacaacttattacacagaatcccatttttttggaacgagttgagggagttggttttattagcggagaagctgtaaattggggcttatcgggccccatgttacgagcttctggaatacaatgggatcttcataaagttgatctttacgagtcttacaatcaattcgattggaaagtccaatggcaaaaagaaggagattcattagcacgctatttagtacgaatcggtgaaacgagggaatcaaccaaaattattcaacaggctgtagaaaatattcctgggggcccttatgagaatttagaaaaagcaaagaattccgaatggaatgattttgaatatcgatttcttggtaaaaaaccttcacccaattttgaattgtcaaagcaagagctttatgcaagagtggaagccccaaaagtctatggactgatatggatcctacccattttgaccctcttactgggaatcacagtagaagtactcgtaattgtgtggttagaaagagaaatatccgcatcgatacaacaacgtattggtcctgaatatgctggccccctgggactgcttcaagctatagcagatgggactaagctactttttaaagaggatatcttgccatcccgaggggatattcccttatttagcattggaccatctatagcagtcatatcaattttattaagttttttagttattcctttgggatatcgttttgttttagcggatcttagtattggtgatttttaa
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| Protein seq | MNPVDHPHGGGEGKAPIGRKKPTTPWGYLSRVAERELIYDLFEAATGLRMMHNYFRIGGVAADLPYGWIDKCLDICDYFLRGVIKYQQLITQNPIFLERVEGVGFISGEAVNWGLSGPMLRASGIQWDLHKVDLYESYNQFDWKVQWQKEGDSLARYLVRIGETRESTKIIQQAVENIPGGPYENLEKAKNSEWNDFEYRFLGKKPSPNFELSKQELYARVEAPKVYGLIWILPILTLLLGITVEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGDF |
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| Function | NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [UniProtKB/Swiss-Prot:P0C337] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0003540 | OsKeNa_04g0003540.01 | Chr04 | 5103440 | 5106476 | - | NAM | ||
| CDS seq | atgaaccctgtggaccacccccatgggggcggtgaagggaaagcccccattggtagaaaaaaacccacaaccccttggggttatctgtcaagggtagcagagagagaattaatatacgatctatttgaagctgctacaggtttgcgaatgatgcataattactttcgcatcggaggagttgctgccgatctgccttatggatggatcgataaatgtttagatatctgtgattattttttacgaggagttattaaatatcaacaacttattacacagaatcccatttttttggaacgagttgagggagttggttttattagcggagaagctgtaaattggggcttatcgggccccatgttacgagcttctggaatacaatgggatcttcataaagttgatctttacgagtcttacaatcaattcgattggaaagtccaatggcaaaaagaaggagattcattagcacgctatttagtacgaatcggtgaaacgagggaatcaaccaaaattattcaacaggctgtagaaaatattcctgggggcccttatgagaatttagaaaaagcaaagaattccgaatggaatgattttgaatatcgatttcttggtaaaaaaccttcacccaattttgaattgtcaaagcaagagctttatgcaagagtggaagccccaaaagtctatggactgatatggatcctacccattttgaccctcttactgggaatcacagtagaagtactcgtaattgtgtggttagaaagagaaatatccgcatcgatacaacaacgtattggtcctgaatatgctggccccctgggactgcttcaagctatagcagatgggactaagctactttttaaagaggatatcttgccatcccgaggggatattcccttatttagcattggaccatctatagcagtcatatcaattttattaagttttttagttattcctttgggatatcgttttgttttagcggatcttagtattggtgatttttaa
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| Protein seq | MNPVDHPHGGGEGKAPIGRKKPTTPWGYLSRVAERELIYDLFEAATGLRMMHNYFRIGGVAADLPYGWIDKCLDICDYFLRGVIKYQQLITQNPIFLERVEGVGFISGEAVNWGLSGPMLRASGIQWDLHKVDLYESYNQFDWKVQWQKEGDSLARYLVRIGETRESTKIIQQAVENIPGGPYENLEKAKNSEWNDFEYRFLGKKPSPNFELSKQELYARVEAPKVYGLIWILPILTLLLGITVEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGDF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 1.160400 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0016770 | SBH | 1.539027 | 0.000000 | 2.548462 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0015640 | SBH | 6.317677 | 1.474350 | 12.904922 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0017250 | SBH | 1.739343 | 0.000000 | 1.101989 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0003230 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003160 | RBH | 481.906342 | 27.525896 | 206.294907 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0003250 | RBH | 16.091660 | 0.510934 | 7.719723 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0082400 | RBH | 0.785881 | 0.108515 | 0.472864 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0003070 | RBH | 3.442496 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0003120 | RBH | 22.328974 | 29.166216 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002980 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0002580 | SBH | 44.273521 | 18.375374 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G003360 | RBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0003140 | RBH | 1.572830 | 0.000000 | 5.126241 |
