Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0002500 | OGI:04041240 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:3848461-3848802 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctcaccgacctgcgtggctgcgtgtgcggttcggcggcggtggcgacgccagggaggagacggggctcaagatcctggcgttcgaggtggcggcggccatgtcgcggctcgtgtcgctctactgctcattttctgacgtgaaggacaggaggctccgcgtggacgcgctgctcgccgagggcgtcgcgcgcgtcacatccacggaccagtcgctcctgctctggctcgcgtgtggcgaggtcgtggcggacctcgaccgtgccgccggcagcgccacgcggttcgggacgcggtgctgcgtggcgcgccgttcctgcacgattttcgaccgcgtctag |
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| CDS seq | atggctcaccgacctgcgtggctgcgtgtgcggttcggcggcggtggcgacgccagggaggagacggggctcaagatcctggcgttcgaggtggcggcggccatgtcgcggctcgtgtcgctctactgctcattttctgacgtgaaggacaggaggctccgcgtggacgcgctgctcgccgagggcgtcgcgcgcgtcacatccacggaccagtcgctcctgctctggctcgcgtgtggcgaggtcgtggcggacctcgaccgtgccgccggcagcgccacgcggttcgggacgcggtgctgcgtggcgcgccgttcctgcacgattttcgaccgcgtctag |
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| Protein seq | MAHRPAWLRVRFGGGGDAREETGLKILAFEVAAAMSRLVSLYCSFSDVKDRRLRVDALLAEGVARVTSTDQSLLLWLACGEVVADLDRAAGSATRFGTRCCVARRSCTIFDRV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0002500 | OsKeNa_04g0002500.01 | Chr04 | 3848461 | 3848802 | + | NAM | ||
| CDS seq | atggctcaccgacctgcgtggctgcgtgtgcggttcggcggcggtggcgacgccagggaggagacggggctcaagatcctggcgttcgaggtggcggcggccatgtcgcggctcgtgtcgctctactgctcattttctgacgtgaaggacaggaggctccgcgtggacgcgctgctcgccgagggcgtcgcgcgcgtcacatccacggaccagtcgctcctgctctggctcgcgtgtggcgaggtcgtggcggacctcgaccgtgccgccggcagcgccacgcggttcgggacgcggtgctgcgtggcgcgccgttcctgcacgattttcgaccgcgtctag
More
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| Protein seq | MAHRPAWLRVRFGGGGDAREETGLKILAFEVAAAMSRLVSLYCSFSDVKDRRLRVDALLAEGVARVTSTDQSLLLWLACGEVVADLDRAAGSATRFGTRCCVARRSCTIFDRV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g23840 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0002600 | SBH | 0.0 | 3.034854 | 2.140503 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0002930 | RBH | 0.098429 | 0.822597 | 0.582941 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0002700 | SBH | 0.318106 | 4.280839 | 2.530832 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0002390 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0009040 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0073800 | SBH | 8.201881 | 11.935037 | 2.0622265 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002420 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0073800 | SBH | 7.7748715 | 9.0787065 | 21.654013 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002710 | SBH | 0.115382 | 0.112635 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0008810 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0006830 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0013990 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0033730 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G002500 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002780 | SBH | 0.660443 | 7.334781 | 2.343251 |
