Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0002710 | OGI:04016130 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:4846044-4848197 | ||||||||
| Gene Symbol | DUF668-6, OsDUF668-6, - | ||||||||||
| DNA seq | tgaccaaggcagagtgacttgatatattcataGtctgaacattccatatgctagaattcattaggtaaacaaaggagtaaaactttgtgacttcactaccaaataccaaataggatactttcaactagttatccacaaacatgtcctaccaaatacaaaataaaaaaggtgaattttactaaggcacaaaccccttttggacacttgagattgctcatttgctttggcacaaaacattcatttatgtacaactgagttagacagagcatatctcaagtgaacaaaagcattaggcaatcctataaatttttttcatctatgaatgatagatgatctcatgtgcaacttgcacccaaaaaaacagaagagaaaaaaatccaaaccaaaacacaagtaccctttgttgtttcatattccttgtacactatggaaccaagcagaaacctgaccttggactgatggactctactgcagttgccactccatacaatcgtcgaagtcgagactactagagcaatccagcagtgcattctgttgctgctcataccggcagatgtaatttagcccgacaagcaattcgcatatcacggcctccgtcttctccctgtccgcgaaatacaatgtctgaagaagtagcacattccccttcaacacaatctgctgctgctcgaaattcctctcggcttgccaccggatcatgttgtgcgccatcggagcaagccatgtcagggtcttctcaagcgtttccctccaatcgtgcgcgaggaacgcatcgtagatcgccatgctcttcacatatgttttcaagctcttcctcagtgctgctctcaagcttgatggcaacatctggtacagatcatcccgagcctcctcaccaacaagatgtgggtaccggagcaacttctcgatgatgatgacaatattagcgtaatgcaacgcaagcgctgacccgccaatcgtggatggcggggctagtgatgtcacagtacttttcggaccgaatcgcgcccttctgccaaccttgccactcttggttgccattgtcgacaccccctgctcgccgctgaatggcagaagcatcccggacctgattgtgctaatgcagctggcatcctccaagaattcatcctcaaacccatccttccatgacaccgagctactcaagctcaagcactccatgaacattttaccggggcttgccccgcaattcgaccGgaaattcacggaacgtggcgtgtccatgtcgatccttgcaattggccctgatttggtgtcgccgaaattagtccggacatggcccgaattattcgccgaggctgggccggagagctgccggctttggtcacactgccttgagctccggccaatggccagcaagtcgagcccccgcattGggtcgccgaagacgaggcggatgcggtcgtagatggcgcagacggcgcgggcgagcaggagcacggccttgtcgtaggtccagttccagagcgacgagtccctgaggcgGCgcgcgtcgtggcggcgccaccgcgtgcgctgctccagcgcgcggcgcgcctcgtcggtggggagcttccgcgcagactgctcgaggtcggcgagcgcctcgagctcggcgtagagcgcggccgtggcggcggcgaggcggtcgagcttgcggacgagcgcggtggcctcggagtgcgaggcggcggcgaaggcggcgtcggagcggccggcgaggaggtcggcgtagacgtggtcgaagccgagaagcgccgggagcgtgcaccgcctgccgaggcgcgccgcgacggccgcgacgcggttgagcgcgtcgagcttctcggcgagcgcgagcgccaggagGCgcgcgtcgtcgcccggcactagcgcgcgcaccgcctgggagccgaggcagagcgggccgagcagccgcgccgcctcggcgtccgacagcgagcggtacaggttggcggcgcgcgacatggcgttcgccacctcgaacgacaggatGccgaccctcccgtcatccaccaccccctccaccgccgccgccgccgccgcGccgcccttgccgctactcgtcgtcaccggcttcaccttcctagacgacgacgacgacgacgacgacgtcgccatggacagcaccttgtgcaccagcggctcggccaccat
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| CDS seq | atggtggccgagccgctggtgcacaaggtgctgtccatggcgacgtcgtcgtcgtcgtcgtcgtcgtctaggaaggtgaagccggtgacgacgagtagcggcaagggcggCgcggcggcggcggcggcggtggagggggtggtggatgacgggagggtcggCatcctgtcgttcgaggtggcgaacgccatgtcgcgcgccgccaacctgtaccgctcgctgtcggacgccgaggcggcgcggctgctcggcccgctctgcctcggctcccaggcggtgcgcgcgctagtgccgggcgacgacgcgcGCctcctggcgctcgcgctcgccgagaagctcgacgcgctcaaccgcgtcgcggccgtcgcggcgcgcctcggcaggcggtgcacgctcccggcgcttctcggcttcgaccacgtctacgccgacctcctcgccggccgctccgacgccgccttcgccgccgcctcgcactccgaggccaccgcgctcgtccgcaagctcgaccgcctcgccgccgccacggccgcgctctacgccgagctcgaggcgctcgccgacctcgagcagtctgcgcggaagctccccaccgacgaggcgcgccgcgcgctggagcagcgcacgcggtggcgccgccacgacgcgcGCcgcctcagggactcgtcgctctggaactggacctacgacaaggccgtgctcctgctcgcccgcgccgtctgcgccatctacgaccgcatccgcctcgtcttcggcgaccCaatgcgggggctcgacttgctggccattggccggagctcaaggcagtgtgaccaaagccggcagctctccggcccagcctcggcgaataattcgggccatgtccggactaatttcggcgacaccaaatcagggccaattgcaaggatcgacatggacacgccacgttccgtgaatttcCggtcgaattgcggggcaagccccggtaaaatgttcatggagtgcttgagcttgagtagctcggtgtcatggaaggatgggtttgaggatgaattcttggaggatgccagctgcattagcacaatcaggtccgggatgcttctgccattcagcggcgagcagggggtgtcgacaatggcaaccaagagtggcaaggttggcagaagggcgcgattcggtccgaaaagtactgtgacatcactagccccgccatccacgattggcgggtcagcgcttgcgttgcattacgctaatattgtcatcatcatcgagaagttgctccggtacccacatcttgttggtgaggaggctcgggatgatctgtaccagatgttgccatcaagcttgagagcagcactgaggaagagcttgaaaacatatgtgaagagcatggcgatctacgatgcgttcctcgcgcacgattggagggaaacgcttgagaagaccctgacatggcttgctccgatggcgcacaacatgatccggtggcaagccgagaggaatttcgagcagcagcagattgtgttgaaggggaatgtgctacttcttcagacattgtatttcgcggacagggagaagacggaggccgtgatatgcgaattgcttgtcgggctaaattacatctgccggtatgagcagcaacagaatgcactgctggattgctctagtagtctcgacttcgacgattgtatggagtggcaactgcagtag
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| Protein seq | MVAEPLVHKVLSMATSSSSSSSSRKVKPVTTSSGKGGAAAAAAVEGVVDDGRVGILSFEVANAMSRAANLYRSLSDAEAARLLGPLCLGSQAVRALVPGDDARLLALALAEKLDALNRVAAVAARLGRRCTLPALLGFDHVYADLLAGRSDAAFAAASHSEATALVRKLDRLAAATAALYAELEALADLEQSARKLPTDEARRALEQRTRWRRHDARRLRDSSLWNWTYDKAVLLLARAVCAIYDRIRLVFGDPMRGLDLLAIGRSSRQCDQSRQLSGPASANNSGHVRTNFGDTKSGPIARIDMDTPRSVNFRSNCGASPGKMFMECLSLSSSVSWKDGFEDEFLEDASCISTIRSGMLLPFSGEQGVSTMATKSGKVGRRARFGPKSTVTSLAPPSTIGGSALALHYANIVIIIEKLLRYPHLVGEEARDDLYQMLPSSLRAALRKSLKTYVKSMAIYDAFLAHDWRETLEKTLTWLAPMAHNMIRWQAERNFEQQQIVLKGNVLLLQTLYFADREKTEAVICELLVGLNYICRYEQQQNALLDCSSSLDFDDCMEWQLQ |
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| Function | Protein PSK SIMULATOR 1 [UniProtKB/Swiss-Prot:Q9XID5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0002710 | OsLima_04g0002710.01 | Chr04 | 4846044 | 4848197 | - | NAM | ||
| CDS seq | atggtggccgagccgctggtgcacaaggtgctgtccatggcgacgtcgtcgtcgtcgtcgtcgtcgtctaggaaggtgaagccggtgacgacgagtagcggcaagggcggCgcggcggcggcggcggcggtggagggggtggtggatgacgggagggtcggCatcctgtcgttcgaggtggcgaacgccatgtcgcgcgccgccaacctgtaccgctcgctgtcggacgccgaggcggcgcggctgctcggcccgctctgcctcggctcccaggcggtgcgcgcgctagtgccgggcgacgacgcgcGCctcctggcgctcgcgctcgccgagaagctcgacgcgctcaaccgcgtcgcggccgtcgcggcgcgcctcggcaggcggtgcacgctcccggcgcttctcggcttcgaccacgtctacgccgacctcctcgccggccgctccgacgccgccttcgccgccgcctcgcactccgaggccaccgcgctcgtccgcaagctcgaccgcctcgccgccgccacggccgcgctctacgccgagctcgaggcgctcgccgacctcgagcagtctgcgcggaagctccccaccgacgaggcgcgccgcgcgctggagcagcgcacgcggtggcgccgccacgacgcgcGCcgcctcagggactcgtcgctctggaactggacctacgacaaggccgtgctcctgctcgcccgcgccgtctgcgccatctacgaccgcatccgcctcgtcttcggcgaccCaatgcgggggctcgacttgctggccattggccggagctcaaggcagtgtgaccaaagccggcagctctccggcccagcctcggcgaataattcgggccatgtccggactaatttcggcgacaccaaatcagggccaattgcaaggatcgacatggacacgccacgttccgtgaatttcCggtcgaattgcggggcaagccccggtaaaatgttcatggagtgcttgagcttgagtagctcggtgtcatggaaggatgggtttgaggatgaattcttggaggatgccagctgcattagcacaatcaggtccgggatgcttctgccattcagcggcgagcagggggtgtcgacaatggcaaccaagagtggcaaggttggcagaagggcgcgattcggtccgaaaagtactgtgacatcactagccccgccatccacgattggcgggtcagcgcttgcgttgcattacgctaatattgtcatcatcatcgagaagttgctccggtacccacatcttgttggtgaggaggctcgggatgatctgtaccagatgttgccatcaagcttgagagcagcactgaggaagagcttgaaaacatatgtgaagagcatggcgatctacgatgcgttcctcgcgcacgattggagggaaacgcttgagaagaccctgacatggcttgctccgatggcgcacaacatgatccggtggcaagccgagaggaatttcgagcagcagcagattgtgttgaaggggaatgtgctacttcttcagacattgtatttcgcggacagggagaagacggaggccgtgatatgcgaattgcttgtcgggctaaattacatctgccggtatgagcagcaacagaatgcactgctggattgctctagtagtctcgacttcgacgattgtatggagtggcaactgcagtag
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| Protein seq | MVAEPLVHKVLSMATSSSSSSSSRKVKPVTTSSGKGGAAAAAAVEGVVDDGRVGILSFEVANAMSRAANLYRSLSDAEAARLLGPLCLGSQAVRALVPGDDARLLALALAEKLDALNRVAAVAARLGRRCTLPALLGFDHVYADLLAGRSDAAFAAASHSEATALVRKLDRLAAATAALYAELEALADLEQSARKLPTDEARRALEQRTRWRRHDARRLRDSSLWNWTYDKAVLLLARAVCAIYDRIRLVFGDPMRGLDLLAIGRSSRQCDQSRQLSGPASANNSGHVRTNFGDTKSGPIARIDMDTPRSVNFRSNCGASPGKMFMECLSLSSSVSWKDGFEDEFLEDASCISTIRSGMLLPFSGEQGVSTMATKSGKVGRRARFGPKSTVTSLAPPSTIGGSALALHYANIVIIIEKLLRYPHLVGEEARDDLYQMLPSSLRAALRKSLKTYVKSMAIYDAFLAHDWRETLEKTLTWLAPMAHNMIRWQAERNFEQQQIVLKGNVLLLQTLYFADREKTEAVICELLVGLNYICRYEQQQNALLDCSSSLDFDDCMEWQLQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.115382 | 0.112635 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0169500 | RBH | 1.017265 | 0.695488 | 3.268441 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g08764 | RBH | 0.429955 | 0.608607 | 0.444390 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0169500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0002600 | RBH | 0.0 | 3.034854 | 2.140503 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0002930 | RBH | 0.098429 | 0.822597 | 0.582941 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0002700 | RBH | 0.318106 | 4.280839 | 2.530832 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0002840 | RBH | 0.165769 | 0.173708 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0002760 | RBH | 0.788167 | 3.967733 | 6.486360 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0073800 | RBH | 8.201881 | 11.935037 | 2.0622265 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002910 | RBH | 0.037199 | 0.246466 | 0.489213 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0073800 | RBH | 7.7748715 | 9.0787065 | 21.654013 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0002920 | RBH | 0.084917 | 3.786221 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0002790 | RBH | 0.739855 | 5.305034 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002620 | RBH | 0.075940 | 0.332489 | 0.213751 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0002710 | RBH | 0.176020 | 4.988016 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G002930 | RBH | 0.0 | 0.684176 | 1.358906 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002780 | RBH | 0.660443 | 7.334781 | 2.343251 |
