Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0039780 | OGI:03096410 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:35666522-35670758 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcggcggcggctttagggctcccggcctgcggcggtgcggctccacggcggatcgagccggcggcggtggctcccagcggaggcggcagcggtgtcggcgcagctccaccgcggatcgaggtggcggcggcggcagcttcggcttcgcggtgtgctccaccgcgggttgaggcggcggcggctgggcgtgctccttcagtcctcctcccatctccaactccccccaagactggtactgtggttcacatcatagcaactagcaacggattctttggttcttgattttctttttattttctttggttcttgattctttagttcctcttctatgcagttccttctttcggcggcggatggaggcaccggcgggcggcggctacctgcttggtggccaaccggcgaggtgctccggaggacactccaccggcagcaacggcgagggtttcggaggacacccggccacatcgccaccttcttccagctgggtttctctaactcgtgagcacaagtatgatttcctccatgaaccctgtcttgttcatctgtcttgctcggttttggtttgatttgtatatatagtgtctcattcaggagaaagtttcagtgactgttatagctaggctttcatgccattttgctaggcccagatttgtatgccaggaaaaagtttcattttgctttcatgccattcaggagaaagtttcagttactgctaatttaaagtttcctactgccttgtgtaaaatagatggtcttttactttgtctctatataacctggattttctcaatattcaggatatactgaacgaaacactgaataagtagcatttttgcatgcttctgacaacatgctgttgtgcagatttttacaccaaaatttcctttccatacattatgtgatagaaaattattttagatggcaaatgatacatttgtgttgttcgttgctttgtttcaagtgaggaaatgcggacacccaacgcattttttggacttggcactaacagtggtgaagatattgagatgggtgatggtgatagtgactctgaacaagttggtcctgtagatgagcatgtgaatccagtaatacaagctttaacaaggaaattcagatctgaggcttggaaagagtttgtgccgatactcattgataatgaagttggtgcaggaaaatgtaagcactgtgatacagagatccgtgcaaagcgtggagcgggaacaagttcattgaggaagcatttgacaagatgcaagaagcgaattagtgctcttaagattgtgggaaatcttgactctacacttatgtctcctaatagtgtaaggttaaagaattggagctttgatcctgaagtttctagaaaagagctcatgcgaatgattgtattacatgagttgcccttccagtttgtggagtatgatggatttagaagttttgctgctagtcttaacccctacttcaagattatttcgagaacaactataaggaatgattgcatcgctgcttttaaagagcaaaagttagcaatgaaggacatgttcaagggtgcaaattgtaggttcccattgactgcagatatgtggacttcgaaccaaacaatgggatacatgtgtgtgacatgtcatttcattgacacagattggagagtacagaagaggattataaagttctttggagtaaagacacctcatactggagtgcagatgttcaatgctatgctcagctgcattcaagattggaatatcgcagacaaaatattcagtgttactttggattatgcttcagccaatgattcaatggctaagttgttaaagtgcaatttgaaagctaagaaaactataccagcaggagggaagctacttcacaaccgatgtgcaacacatgtcatcaatctcatagccaaagatgggttgaaggttattgattctattgtttgcaacatccgtgaaagtgtgaagtacagggataattccctatctcgcaaagaaaagtttgaggagatcattgcccaagaagggatcacatgcgagttgcatcccactgtggatgtatgtactcgttggaactccacatatctaatgctcaatgcagccttccctttcatgagggcttatgcttcattggctgttcaagacaaaaattacaaatatgcaccctctcctgatcagtgggaaagatcaaccatagtctctggaattttgaaggtgctttatgatgcaactatggtggtgtctggatctttatatccaacatcaaacctttatttccatgagatgtggaaaatcaaattggtcttggacaaggaacactctaacaatgacactgaagtggcaagtatggttcaaaagatgaaggacaaatttgacaagtattggcttaagtcttacaaatatctgtgcattcctgtcatttttgacccaagattcaaattcaattttgtggaatttcggcttgggcaagcctttggtgaaaatgctaaagagaggattgacaaagttaagaagagaatgaacatgttgtttaaggagtactctgataaactcaaggatagcaatgctaacccactgcgccaagctgaacatgtgatggctatctctgaaaatgatcctatggctgattgggttcaacacatctctgaacaatgaagtgagcaagttgatactgaattggatatctacctcaaagagaatcctattcaggaatttgggaacaaatttgacattctaaattggtggaagaccaatcactcaaagtatccaactctcgcttgcatagcacaggatgtgctagcatggcctgcttcaacagttgcatctgagtccgcattcagcacaggatctagagtgatcagcgatttcagatgtagccttacaatggattcagttgaggcgcttatctgcctccaagattggtttcgagcttctgccggtatacacgactgccctcgttcatttacttctagtatttatcttgctaaaactaatttatttttatgttttgattgctaggtcctaacataaatgtgagctcagtaaatgaaatcaactacagtgataattttgtggttagtaaattgcttgtgctcttcttatcatctgtctatttaattttctgaaagagaaagatgtctatttattcagtatttgcttgattgcttgcaagatctcttccagcttttctctttctatttatccagtattgaacaatgcctatatgggtttgttgtcctacttgctagctttctgtaaaattggaatatgaagtttcaatgtctctatcatgtattcatctttatctatagaacctggacctggaggattccatggatggacaggatggtggaagcttgtgaatgcccaaacaaaggatctggatattgatggttagtaatctatcatgaacttgtattatactatttataatctgagctagttcaactcttgtacaacatatgagaagctctagatgtacaaaaggaataaacctcatttctggtattgcaatgctctgctttctgaaataaaacgatagcctaaaaatagactgtactgcactactgctagataaatgaagaaaattagtaaaatctgcaaaatttgtgtagcacttgttagatgattcttgtattccttaatctctgattgtgaatactattgagtgactgcagattacttctgtttttcaagcatgttttatatgtcaaatactcaaatgcttagaacacctactgcgttgattcctctgtctgtctgcatatgctcatgtctttgattcagttgttgcccataaaacataaatgcaccatttctttttctgagagatattgcaggttattacctttttaaaacaattattgtatattttcttcctgttattataccatgatcattcgatctctccatcatgttaacctgcagaatctggacctgggtgattcaacgaacagtgcaagctagggaatgccaaatgatgcccactttgatcttggaaggctgcattttgtttgatctcaatataatgaaccggatatttgggttgttcaaatcgatttttgtgaatgatatgagtacatgcatgtacttagttttaattgaactgggtgccagtacccagtgattgatgtttgtacttttgaatgcaaaagattaagtcatttcggaatgtttgcattgggtatacagtgtgttctggtatggtttttgattatttatttattttgctgtagtgctgttga
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| CDS seq | atggcggcggcggctttagggctcccggcctgcggcggtgcggctccacggcggatcgagccggcggcggtggctcccagcggaggcggcagcggtgtcggcgcagctccaccgcggatcgaggtggcggcggcggcagcttcggcttcgcggtgtgctccaccgcgggttgaggcggcggcggctgggcgtgctccttcagtcctcctcccatctccaactccccccaagactgttcctcttctatgcagttccttctttcggcggcggatggaggcaccggcgggcggcggctacctgcttggtggccaaccggcgaggtgctccggaggacactccaccggcagcaacggcgagggtttcggaggacacccggccacatcgccaccttcttccagctgggtttctctaactcgtgagcacaatgaggaaatgcggacacccaacgcattttttggacttggcactaacagtggtgaagatattgagatgggtgatggtgatagtgactctgaacaagttggtcctgtagatgagcattgctgttga
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| Protein seq | MAAAALGLPACGGAAPRRIEPAAVAPSGGGSGVGAAPPRIEVAAAAASASRCAPPRVEAAAAGRAPSVLLPSPTPPKTVPLLCSSFFRRRMEAPAGGGYLLGGQPARCSGGHSTGSNGEGFGGHPATSPPSSSWVSLTREHNEEMRTPNAFFGLGTNSGEDIEMGDGDSDSEQVGPVDEHCC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0039780 | OsKeNa_03g0039780.01 | Chr03 | 35666522 | 35670758 | + | NAM | ||
| CDS seq | atggcggcggcggctttagggctcccggcctgcggcggtgcggctccacggcggatcgagccggcggcggtggctcccagcggaggcggcagcggtgtcggcgcagctccaccgcggatcgaggtggcggcggcggcagcttcggcttcgcggtgtgctccaccgcgggttgaggcggcggcggctgggcgtgctccttcagtcctcctcccatctccaactccccccaagactgttcctcttctatgcagttccttctttcggcggcggatggaggcaccggcgggcggcggctacctgcttggtggccaaccggcgaggtgctccggaggacactccaccggcagcaacggcgagggtttcggaggacacccggccacatcgccaccttcttccagctgggtttctctaactcgtgagcacaatgaggaaatgcggacacccaacgcattttttggacttggcactaacagtggtgaagatattgagatgggtgatggtgatagtgactctgaacaagttggtcctgtagatgagcattgctgttga
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| Protein seq | MAAAALGLPACGGAAPRRIEPAAVAPSGGGSGVGAAPPRIEVAAAAASASRCAPPRVEAAAAGRAPSVLLPSPTPPKTVPLLCSSFFRRRMEAPAGGGYLLGGQPARCSGGHSTGSNGEGFGGHPATSPPSSSWVSLTREHNEEMRTPNAFFGLGTNSGEDIEMGDGDSDSEQVGPVDEHCC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0822100 | RBH | 0.525793 | 0.492459 | 0.214415 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g60730 | RBH | 0.323276 | 0.311655 | 0.050182 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0822100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0040110 | RBH | 0.116787 | 0.988499 | 0.390523 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0023890 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0039860 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0040090 | RBH | 0.025388 | 0.020478 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0039660 | RBH | 1.263770 | 3.117448 | 8.529654 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0588700 | RBH | 1.396643 | 4.886403 | 6.4397155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0039410 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0591300 | RBH | 1.9493185 | 8.178854 | 12.525571 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0039980 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0023710 | SBH | 0.511774 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0039550 | RBH | 1.952004 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0039650 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0039710 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G039460 | RBH | 0.447863 | 0.986764 | 0.711282 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0039210 | RBH | 0.0 | 0.0 | 0.000000 |
