Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsZS97_03G0591300 | OGI:03096410 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr03:37399792-37403620 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ATGGAGGCACCGGCGGGCGGCGGCTACCTGCTTGGTGGCCAACCGGCGAGGTGCTCCGGAGGACACTCCACCGGCAGCAACGGCGAGGGTTTCGAAGGACGCCCGGCCACATCGCCACCTTCGTCCAGCTGGGTTTCTCTAACTCGTGAGCACAAGTATGATTTCCTCCATGAACCCTGTCTTGTTCATCTGTCTTGCTCGGTTTTGGTTTGATTTGTATATATAGTGTCTCATTCAGGAGAAAGTTTCAGTGACTGTTATAGCTAGGCTTTCATGCCATTTTGCTAGGCCCAGATTTGTATGCCAGGAGAAAGTTTCATTTTGCTTTCATGCCATTCAGGAGAAAGTTTCAGTTACTGCTAATTTAAAGTTTCCTATTGCCCTATTGCCTTGTGTAAAATAGATGGTCTTTTACTTTGTCTCTATATAACCTGGATTTTCTCAATATTCAGGATATACTGAACGAAACACTGAATAAGTAGCATTTTTGCATGCTGCTGACAACATGCTGTTGTGCAGATTTTTACACCAAAATTTCCTTTCCATACATTATGTGATAGAAAATTATTTTAGATGGCAAATGATACATTTGTGTTGTTCGTTGCTTTGTTTCAAGTAAGGAAATGCGGACACCCAACGCATTTTTTGGACTTGGCACTAACAGTGGTGAAGATATTGAGATGGGTGATGGTGATAGTGACTCTGAACAAGTTGGTCCTGTAGATGAGCATGTGAATCCAGTAATACAAGCTTTAACAAGGAAATTCAGATCTGAGGCTTGGAAAGAGTTTGTGCCGATACTCATTGATAATGAAGTTGGTGCAGGAAAATGTAAGCACTGTGATACAGAGATCCGTGCAAAGCGTGGAGCGGGAACAAGTTCATTGAGGATGCATTTGACAAGATGCAAGAAGCGAATTAGTGCTCTTAAGATTGTGGGAAATCTTGACTCTACACTTATGTCTCCTAATAGTGTAAGGTTAAAGAATTGGAGCTTTGATCCTAATGTTTCTAGAAAAGAGCTCATGCGAATGATTGTATTACATGAGTTGCCCTTCCAGTTTGTGGAGTATGATGGATTTAGAAGTTTTGCTGCTAGTCTTAACCCCTACTTCAAGATTATTTCAAGAACAACTATAAGGAATGATTGCATCGCTGCTTTTAAAGAGCAAAAGTTAGCAATGAAGGACATGTTCAAGGGTGCAAATTGTAGGTTCTCATTGACTGCAGATATATGGACTTCGAACCAAACAATGGGATACATGTGTGTGACATGTCATTTCATTGACACAGATTGGAGAGTACAGAAGAGGATTATAAAGTTCTTTGGAGTAAAGACACCTCATACTGGAGTGCAGATGTTCAATGCTATGCTCAGCTGCATTCAAGATTGGAATATCGCAGACAAAATATTCAGTGTTACTTTGGATAATGCTTCAGCCAATGATTCAATGGCTAAGTTGTTAAAGTGCAATTTGAAAGCTAAGAAAACTATACTAGTAGGAGGGAAGCTACTTCACAACTGATGTGCAGCACATGTCATCAATCTCATAGCCAAAGATGGGTTGAAGGTTATTGATTCTATTGTTTGCAACATCCGTGAAAGTGTGAAGTACATGGATAATTCCCTATCTCGCAAAGAAAAGTTTGAGGAGATCATTGCCCAAGAAGGGATCACATGCGAGTTGCATCCCACTGTGGATGTATGTACTCGTTGGAACTCCACATATCTAATTCTCAATGCAGCCTTCCCTTTCATGAGGGCTTATGCTTCATTGGCTGTTCAAGACAAAAATTACAAATATGCACCCTCTCCTGATCAGTGGGAAAGAGCAACCATAGTCTCTGGAATTTTGAAGGTGCTTTATGATGCAACTATGGTGGTGTCTGGATCTTTATATCCAACATCAAACCTTTATTTCCATGAGATGTGGAAAATCAAATTGGTCTTGGACAAGGAACGCTCTAACAATGACACTGAAGTGGCAAGTATGGTTCAAAAGATGAAGGACAAATTTGACAAGTATTGGCTTAAGTCTTACAAATATCTGTGCATTCCTGTCATTTTTGACCCAAGATTCAAATTCAAGTTTGTGGAATTTTGGCTTGGGCAAGCCTTTGGTGAAAATGCTAAAGAGAGGATTGACAAAGTTAAGAAGAGAATGAACATGTTGTTTAAGGAGTACTCTGATAAACTCAAGGATAGCAATGCTAACCCACTGCGCCAAGCTGAACATGTGATGGCTATCTCTGAAAATGATCCTATGGCTGATTGGGTTCAACACATCTCTGAACAATGAAGTGAGCAAGTTGATACTGAATTGGATATTTACCTCAAAGAGAATCCTATTCAGGAATTTGGGAACAAATTTGACATTCTAAATTGGTGGAAGACCAATCGCTCAAAGTATCCAACTCTAGCTTGCATAGCACAGGATGTGCTAGCATGGCCTGCTTCAACAGTTGCATCTGAGTCCGCATTCAGCACAGGATCTAGAGTGATCAGTGATTTCAGATGTAGCCTTACAATGGATTCAGTTGAGGCGCTTATCTGCCTCCAAGATTGGTTTCGAGCTTCTGCCGGTATACACGACTGCCCTCGTTCATTTACTTCTAGTATTTATCTTGCTAAAACTAATTTATTTTTATGTTTTGATTGCTAGGTCCTAACATAAATGTGAGCTCAGTAAATGAAATCAACTACAGTGATAATTTTGTGGTTAGTAAATTGCTTGTGCTCTTCTTATCATCTGTCTATTTAATTTTCTGAAAGAGAAAGATGTCTATTTATTCAGTATTTGCTTGATTGCTTGCAAGATCTCTTCCAGCTTTTCTCTTTCTATTTATCCAGTATTGAACAATGCCTATATGGGTTTGTTGTCCTACTTGCTAGCTTTCTATAAAATTGGAATATGAAGTTTCAATGTCTCTATCATGTATTCATCTTTATCTATAGAACCTGGACCTGGAGGATTCCATGGATGGACAGGATGGTGGAAGCTTGTGAATGCCCAAACAAAGGATCTGGATATTGATGGTTAGTAATCTATCATGAACTTGTATTATACTATTTATAATCTGAGCTAGTTCAACTCTTTTACAACATATGAGAAGCTCTAGATGTACAAAAGGAATAAGCCTCATTTCTGGTATTGCAATGCTTTGCTTTCTGAAATAAAACGATAGCCTAAAAATAGACTGTACTGCACTACTGCTAGATAAATGAAGAAAATTAGTAAAATCTGCAAATTTGTGTAGCACATGTTAGATGATTCTTGTATTCCTTAATCTCTGATTGTGAATACTATTGAGTGACTGCAGATTAATTCTGTTTTTCAAGCATGTTTTATATGTCAAATACTCAAATGCTTAGAACACCTACTGTGTTGATTCCTCTGTCTGTCTGCATATGCTCATGTCTTGATTCAGTTGTTGCCCATAAAACATAAATGCACCATTTCTTTTTCTGAGAGATATTGCAGGTTATTACCTTTTTAAAACAATTACTGTATATTTTCTTCCTGTTATTATACCATGATCATTCGATCTCTCCATCATGTTAACCTGCAGAATCTGGACCTGGGTGATTCAACGAACAGTGCAAGCTAGGGAACGCCAAATGATGCCCACTTTGATCTTGGAAGGCTGCATTTTGTTTGATCTCAATCTAATGAACCGGATATTTGGGTTGTTCAAATCGATTTTTGTGAATGATATGAGTACATGCATGTACTTAGTTTTAATTGAACTGGGTGCCAGTACCCAGTGATTGATGTTTGTACTTTTGAATGCAAAAGATTAAGTCATTTCGGAATGTTTGCATTGGGTA
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CDS seq | ATGGAGGCACCGGCGGGCGGCGGCTACCTGCTTGGTGGCCAACCGGCGAGGTGCTCCGGAGGACACTCCACCGGCAGCAACGGCGAGGGTTTCGAAGGACGCCCGGCCACATCGCCACCTTCGTCCAGCTGGGTTTCTCTAACTCGTGAGCACAATAAGGAAATGCGGACACCCAACGCATTTTTTGGACTTGGCACTAACAGTGGTGAAGATATTGAGATGGGTGATGGTGATAGTGACTCTGAACAAGTTGGTCCTGTAGATGAGCATGTGAATCCAGTAATACAAGCTTTAACAAGGAAATTCAGATCTGAGGCTTGGAAAGAGTTTGTGCCGATACTCATTGATAATGAAGTTGGTGCAGGAAAATGTAAGCACTGTGATACAGAGATCCGTGCAAAGCGTGGAGCGGGAACAAGTTCATTGAGGATGCATTTGACAAGATGCAAGAAGCGAATTAGTGCTCTTAAGATTGTGGGAAATCTTGACTCTACACTTATGTCTCCTAATAGTGTAAGGTTAAAGAATTGGAGCTTTGATCCTAATGTTTCTAGAAAAGAGCTCATGCGAATGATTGTATTACATGAGTTGCCCTTCCAGTTTGTGGAGTATGATGGATTTAGAAGTTTTGCTGCTAGTCTTAACCCCTACTTCAAGATTATTTCAAGAACAACTATAAGGAATGATTGCATCGCTGCTTTTAAAGAGCAAAAGTTAGCAATGAAGGACATGTTCAAGGGTGCAAATTGTAGGTTCTCATTGACTGCAGATATATGGACTTCGAACCAAACAATGGGATACATGTGTGTGACATGTCATTTCATTGACACAGATTGGAGAGTACAGAAGAGGATTATAAAGTTCTTTGGAGTAAAGACACCTCATACTGGAGTGCAGATGTTCAATGCTATGCTCAGCTGCATTCAAGATTGGAATATCGCAGACAAAATATTCACACATGTCATCAATCTCATAGCCAAAGATGGGTTGAAGGTTATTGATTCTATTGTTTGCAACATCCGTGAAAGTGTGAAGTACATGGATAATTCCCTATCTCGCAAAGAAAAGTTTGAGGAGATCATTGCCCAAGAAGGGATCACATGCGAGTTGCATCCCACTGTGGATGTATGTACTCGTTGGAACTCCACATATCTAATTCTCAATGCAGCCTTCCCTTTCATGAGGGCTTATGCTTCATTGGCTGTTCAAGACAAAAATTACAAATATGCACCCTCTCCTGATCAGTGGGAAAGAGCAACCATAGTCTCTGGAATTTTGAAGGTGCTTTATGATGCAACTATGGTGGTGTCTGGATCTTTATATCCAACATCAAACCTTTATTTCCATGAGATGTGGAAAATCAAATTGGTCTTGGACAAGGAACGCTCTAACAATGACACTGAAGTGGCAAGTATGGTTCAAAAGATGAAGGACAAATTTGACAAGTATTGGCTTAAGTCTTACAAATATCTGTGCATTCCTGTCATTTTTGACCCAAGATTCAAATTCAAGTTTGTGGAATTTTGGCTTGGGCAAGCCTTTGGTGAAAATGCTAAAGAGAGGATTGACAAAGTTAAGAAGAGAATGAACATGTTGTTTAAGGAGTACTCTGATAAACTCAAGGATAGCAATGCTAACCCACTGCGCCAAGCTGAACATGTGATGGCTATCTCTGAAAATGATCCTATGGCTGATTGGCAAGTTGATACTGAATTGGATATTTACCTCAAAGAGAATCCTATTCAGGAATTTGGGAACAAATTTGACATTCTAAATTGGTGGAAGACCAATCGCTCAAAGTATCCAACTCTAGCTTGCATAGCACAGGATGTGCTAGCATGGCCTGCTTCAACAGTTGCATCTGAGTCCGCATTCAGCACAGGATCTAGAGTGATCAGTGATTTCAGATGTAGCCTTACAATGGATTCAGTTGAGGCGCTTATCTGCCTCCAAGATTGGTTTCGAGCTTCTGCCGGTCCTAACATAAATGTGAGCTCAGTAAATGAAATCAACTACAGTGATAATTTTGTGGTTAGTAAATTGCTTGTGCTCTTCTTATCATCTGTCTATTTAATTTTCTGA
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Protein seq | MEAPAGGGYLLGGQPARCSGGHSTGSNGEGFEGRPATSPPSSSWVSLTREHNKEMRTPNAFFGLGTNSGEDIEMGDGDSDSEQVGPVDEHVNPVIQALTRKFRSEAWKEFVPILIDNEVGAGKCKHCDTEIRAKRGAGTSSLRMHLTRCKKRISALKIVGNLDSTLMSPNSVRLKNWSFDPNVSRKELMRMIVLHELPFQFVEYDGFRSFAASLNPYFKIISRTTIRNDCIAAFKEQKLAMKDMFKGANCRFSLTADIWTSNQTMGYMCVTCHFIDTDWRVQKRIIKFFGVKTPHTGVQMFNAMLSCIQDWNIADKIFTHVINLIAKDGLKVIDSIVCNIRESVKYMDNSLSRKEKFEEIIAQEGITCELHPTVDVCTRWNSTYLILNAAFPFMRAYASLAVQDKNYKYAPSPDQWERATIVSGILKVLYDATMVVSGSLYPTSNLYFHEMWKIKLVLDKERSNNDTEVASMVQKMKDKFDKYWLKSYKYLCIPVIFDPRFKFKFVEFWLGQAFGENAKERIDKVKKRMNMLFKEYSDKLKDSNANPLRQAEHVMAISENDPMADWQVDTELDIYLKENPIQEFGNKFDILNWWKTNRSKYPTLACIAQDVLAWPASTVASESAFSTGSRVISDFRCSLTMDSVEALICLQDWFRASAGPNINVSSVNEINYSDNFVVSKLLVLFLSSVYLIF |
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Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsZS97_03G0591300 | OsZS97_03T0591300.1 | Chr03 | 37399792 | 37403620 | + | makerRMon | ||
CDS seq | ATGGAGGCACCGGCGGGCGGCGGCTACCTGCTTGGTGGCCAACCGGCGAGGTGCTCCGGAGGACACTCCACCGGCAGCAACGGCGAGGGTTTCGAAGGACGCCCGGCCACATCGCCACCTTCGTCCAGCTGGGTTTCTCTAACTCGTGAGCACAATAAGGAAATGCGGACACCCAACGCATTTTTTGGACTTGGCACTAACAGTGGTGAAGATATTGAGATGGGTGATGGTGATAGTGACTCTGAACAAGTTGGTCCTGTAGATGAGCATGTGAATCCAGTAATACAAGCTTTAACAAGGAAATTCAGATCTGAGGCTTGGAAAGAGTTTGTGCCGATACTCATTGATAATGAAGTTGGTGCAGGAAAATGTAAGCACTGTGATACAGAGATCCGTGCAAAGCGTGGAGCGGGAACAAGTTCATTGAGGATGCATTTGACAAGATGCAAGAAGCGAATTAGTGCTCTTAAGATTGTGGGAAATCTTGACTCTACACTTATGTCTCCTAATAGTGTAAGGTTAAAGAATTGGAGCTTTGATCCTAATGTTTCTAGAAAAGAGCTCATGCGAATGATTGTATTACATGAGTTGCCCTTCCAGTTTGTGGAGTATGATGGATTTAGAAGTTTTGCTGCTAGTCTTAACCCCTACTTCAAGATTATTTCAAGAACAACTATAAGGAATGATTGCATCGCTGCTTTTAAAGAGCAAAAGTTAGCAATGAAGGACATGTTCAAGGGTGCAAATTGTAGGTTCTCATTGACTGCAGATATATGGACTTCGAACCAAACAATGGGATACATGTGTGTGACATGTCATTTCATTGACACAGATTGGAGAGTACAGAAGAGGATTATAAAGTTCTTTGGAGTAAAGACACCTCATACTGGAGTGCAGATGTTCAATGCTATGCTCAGCTGCATTCAAGATTGGAATATCGCAGACAAAATATTCACACATGTCATCAATCTCATAGCCAAAGATGGGTTGAAGGTTATTGATTCTATTGTTTGCAACATCCGTGAAAGTGTGAAGTACATGGATAATTCCCTATCTCGCAAAGAAAAGTTTGAGGAGATCATTGCCCAAGAAGGGATCACATGCGAGTTGCATCCCACTGTGGATGTATGTACTCGTTGGAACTCCACATATCTAATTCTCAATGCAGCCTTCCCTTTCATGAGGGCTTATGCTTCATTGGCTGTTCAAGACAAAAATTACAAATATGCACCCTCTCCTGATCAGTGGGAAAGAGCAACCATAGTCTCTGGAATTTTGAAGGTGCTTTATGATGCAACTATGGTGGTGTCTGGATCTTTATATCCAACATCAAACCTTTATTTCCATGAGATGTGGAAAATCAAATTGGTCTTGGACAAGGAACGCTCTAACAATGACACTGAAGTGGCAAGTATGGTTCAAAAGATGAAGGACAAATTTGACAAGTATTGGCTTAAGTCTTACAAATATCTGTGCATTCCTGTCATTTTTGACCCAAGATTCAAATTCAAGTTTGTGGAATTTTGGCTTGGGCAAGCCTTTGGTGAAAATGCTAAAGAGAGGATTGACAAAGTTAAGAAGAGAATGAACATGTTGTTTAAGGAGTACTCTGATAAACTCAAGGATAGCAATGCTAACCCACTGCGCCAAGCTGAACATGTGATGGCTATCTCTGAAAATGATCCTATGGCTGATTGGCAAGTTGATACTGAATTGGATATTTACCTCAAAGAGAATCCTATTCAGGAATTTGGGAACAAATTTGACATTCTAAATTGGTGGAAGACCAATCGCTCAAAGTATCCAACTCTAGCTTGCATAGCACAGGATGTGCTAGCATGGCCTGCTTCAACAGTTGCATCTGAGTCCGCATTCAGCACAGGATCTAGAGTGATCAGTGATTTCAGATGTAGCCTTACAATGGATTCAGTTGAGGCGCTTATCTGCCTCCAAGATTGGTTTCGAGCTTCTGCCGGTCCTAACATAAATGTGAGCTCAGTAAATGAAATCAACTACAGTGATAATTTTGTGGTTAGTAAATTGCTTGTGCTCTTCTTATCATCTGTCTATTTAATTTTCTGA
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Protein seq | MEAPAGGGYLLGGQPARCSGGHSTGSNGEGFEGRPATSPPSSSWVSLTREHNKEMRTPNAFFGLGTNSGEDIEMGDGDSDSEQVGPVDEHVNPVIQALTRKFRSEAWKEFVPILIDNEVGAGKCKHCDTEIRAKRGAGTSSLRMHLTRCKKRISALKIVGNLDSTLMSPNSVRLKNWSFDPNVSRKELMRMIVLHELPFQFVEYDGFRSFAASLNPYFKIISRTTIRNDCIAAFKEQKLAMKDMFKGANCRFSLTADIWTSNQTMGYMCVTCHFIDTDWRVQKRIIKFFGVKTPHTGVQMFNAMLSCIQDWNIADKIFTHVINLIAKDGLKVIDSIVCNIRESVKYMDNSLSRKEKFEEIIAQEGITCELHPTVDVCTRWNSTYLILNAAFPFMRAYASLAVQDKNYKYAPSPDQWERATIVSGILKVLYDATMVVSGSLYPTSNLYFHEMWKIKLVLDKERSNNDTEVASMVQKMKDKFDKYWLKSYKYLCIPVIFDPRFKFKFVEFWLGQAFGENAKERIDKVKKRMNMLFKEYSDKLKDSNANPLRQAEHVMAISENDPMADWQVDTELDIYLKENPIQEFGNKFDILNWWKTNRSKYPTLACIAQDVLAWPASTVASESAFSTGSRVISDFRCSLTMDSVEALICLQDWFRASAGPNINVSSVNEINYSDNFVVSKLLVLFLSSVYLIF
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 1.9493185 | 8.178854 | 12.525571 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0822100 | RBH | 0.525793 | 0.492459 | 0.214415 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g60730 | RBH | 0.323276 | 0.311655 | 0.050182 |
Nipponbare | IRGSP 1.0 | RAP-db | Os03g0822100 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0040110 | RBH | 0.116787 | 0.988499 | 0.390523 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0039780 | RBH | 0.0 | 0.0 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0039860 | RBH | 0.0 | 0.0 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0040090 | RBH | 0.025388 | 0.020478 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0039660 | RBH | 1.263770 | 3.117448 | 8.529654 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0512100 | SBH | 10.659963 | 9.832671 | 20.1603985 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0039410 | SBH | 0.000000 | 0.000000 | 0.000000 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0434400 | RBH | 0.106769 | 2.8915175 | 0.6327325 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0039980 | SBH | 0.0 | 0.000000 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0039910 | SBH | 0.279247 | 0.000000 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0039550 | SBH | 1.952004 | 0.000000 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0039650 | SBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0039710 | SBH | 0.000000 | 0.000000 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G039460 | RBH | 0.447863 | 0.986764 | 0.711282 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0039210 | RBH | 0.0 | 0.0 | 0.000000 |