Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0009100 | OGI:03017250 | 11/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:6505203-6508396 | ||||||||
| Gene Symbol | NAC56, ONAC056, ONAC56, OsSWN5 | ||||||||||
| DNA seq | atggtgccgagcgccaatcagatctggaactggaggcaggaaacaaaagaaaaatggacggcagttggctgcgtccaggcgatgcattatccatgttcgatcgatctgctaatcgagatggcttttgccattggacagtcatccgctcgtgtgtatttcaccctgcagaaaagggggcagcagggcgcaagatgtgcggagaacaggcacaggatgaaaggagaggaggggtaaaaacagaggatggctaagaggaaagaatggattacaaccaccagattgacgatgcacatggttgtccaacaagattggatagaagtgtgccccatggatgaactaggaccagccatgctcggtctagtagagctttttggcaaattgagaccagaatttgtaccgtggatatattccctgtgaatcgtgggaccatcggacattgtacaaggatgcttggtgagctgcatgaggaaaagatgggaggagaatcgcaagcacataaatgaataataaatcgatctggtaatgtgcaggaagcgaatgtagcaaaaacaagtacagaaacagaccatttggagccttacacctcctcggttacccacgtttactaataggaaaaaaagtacaaattacccccacgaactatggcggtcgtccaaattacccctctgaaccataaaaccggacattcttcaccccccaactatgcaaaccggacgaattacccccctcgacccaatccacgatggttttggtctacatggcatacgcgtggcagtccagtcagcattttatttattaaaaaaatgtaggacccacctgtcatactcatattccactattcctctctctcttctctctcttactcttctcctctctctctctctcctctcactgtcaactacgcaagcggcggacagaggaggcgaggcgaggcagcgacggctgaggaggcggcggcggcggctaggcgagcggcggctaggcgagcggcagctaggtggcgagcggcggcggctcgaggcgtgcgaccggcggtgatgggtggacgcggaggcggactaggcggctagcggcggaggcaccctggcggagctctctcggacggccgatgacagaggcggaggcggaggcggagcgtgcgtccggtggcggaagagaagggggagtgtcggagcgagcggccgggagcctgccgccccaagctccgtctgcgcggaggaggcgagcgcggtcggcgtaggcggttggcgaggtgaggacggcggcgcgtggggggcgaaggacggcggcggccggcgacggaggcggaggctgaccgggcgcgcggtgggcggcgggctcctcctccacgtcgtgggcgcgcggtgggcggcagcgtgcaggaacgcgtggtgggccaccgccgccaccgcgggctcctcctcctcgtcggcgcgcggtgggctcaccgccgaccgaagtcgcgcccgtggccgttcgccctgccgctcgtcttcaaccgcccgcccccgcccccgtaggcccgcctccgcacgctgcgtgcgccgccgtgcgccgtcgtgcgcgccaccgcgagggattgcggccgaccgccacgacaagcagccgcccctggcgcggggacggatggaggcgggtgcgggcggcggcgcgggacgcggagacggaggttgaggcggcggctggctctcgggttccgcttctacccaacagaggaggagctgatatgcttctacctccgcaacaagctcgacggcctccacgacgacatcgagtgcgtcatccccgtcttcgacatctactccgtcgacccgttgcagctctcaggtaccagcacacacgtgtgcattgcgttcgtcgtacgtcgtcgcgcgagcgccgcgtcacctgtatacacctgcagagattcaccacgagatgctgggcagcagcggcgaggagggggagccgtggttctacttctgcccgcggcaggagcgggaggtgcggggcgggcgaccgagctggaccacgccgtcggggtcctggaaggcggtgggcacgccgggggtcgtctaatccgcgcagccgtggccgcacgccgtcgggaaccaagaccgcgtggaagatgatgagagagagagggaggaagatgggaagatgaggtcttacaggtggcccccaccatttttaaaaaagaaaatgttgatcggatttccacctcaacgccatgtatatgccacgtaggatcaataccacttcatattgagtgaggggggtaatttatccagtttcaatagtttgaggtctaatatgtctggttttgtggttcggggggtaattcggaccaccacgatagttcagagggtaattcgtacttttatagataaaaacagcttgttaaagaacaagaattaatttatagataaactttttatagaaatgttcttagtgacttaaaagtcaatataaaaaactgtgccaaaaatttcttaaaattaactttaaaattaaatatgaaaattcaaTttttgatttttggcattgactaattagaccaacggatcaagctcttactatgcatcactggagcgcaatcaccggtcagtgatacgactgtgatccgctcagccctatagcatgaatgctatgctggaactgaactgaaaaaaaaataaaaataaaaataaaaataaaccacggcactaaatgcctgtcacaacagccaatcgcaacaaacgaaacatgaaggttgcaatgaccaaagtattcgatgaactctacacagattaggcatcccgtattcatggcattttgttacagaaatctcctacttattagaagtaacagctcaataatctacgaatgaagaatgaaaattacacgccatctggtaaaaaaaatcacacgccacagtgaaaaatgatatatctactgtaagaaaatgtcaaaaataacctgaagaatttcaagaattcgtccttaaagcaacgacatgaatttgctaaaaattaagaagtaaattaccaattttaaaagttcacgattatcatgtggtagaaaattacagatggcgtggatcacaagagctaggaacaaaaatttacattgcatcactaatttattggagattgataagcagaacagtcgtgacatatctccaaatactattttgctcattggccttcaattgaaaaattacagaaaccacatga
More
|
||||||||||
| CDS seq | atggtgccgagcgccaatcagatctggaactggaggcaggaaacaaaagaaaaatggacggcagttggctgcgtccaggcgatgcattatccatgttcgatcgatctgctaatcgagatggcttttgccattggacagtcatccgctcgtgtgtatttcaccctgcagaaaagggggcagcagggcgcaagatgcgggtgcgggcggcggcgcgggacgcggagacggaggttgaggcggcggctggctctcgggttccgcttctacccaacagaggaggagctgatatgcttctacctccgcaacaagctcgacggcctccacgacgacatcgagtgcgtcatccccgtcttcgacatctactccgtcgacccgttgcagctctcagaaaccacatga |
||||||||||
| Protein seq | MVPSANQIWNWRQETKEKWTAVGCVQAMHYPCSIDLLIEMAFAIGQSSARVYFTLQKRGQQGARCGCGRRRGTRRRRLRRRLALGFRFYPTEEELICFYLRNKLDGLHDDIECVIPVFDIYSVDPLQLSETT |
||||||||||
| Function | NAC domain-containing protein 90 [UniProtKB/Swiss-Prot:Q9FMR3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0009100 | OsKeNa_03g0009100.01 | Chr03 | 6505203 | 6508396 | + | NAM | ||
| CDS seq | atggtgccgagcgccaatcagatctggaactggaggcaggaaacaaaagaaaaatggacggcagttggctgcgtccaggcgatgcattatccatgttcgatcgatctgctaatcgagatggcttttgccattggacagtcatccgctcgtgtgtatttcaccctgcagaaaagggggcagcagggcgcaagatgcgggtgcgggcggcggcgcgggacgcggagacggaggttgaggcggcggctggctctcgggttccgcttctacccaacagaggaggagctgatatgcttctacctccgcaacaagctcgacggcctccacgacgacatcgagtgcgtcatccccgtcttcgacatctactccgtcgacccgttgcagctctcagaaaccacatga
More
|
|||||||
| Protein seq | MVPSANQIWNWRQETKEKWTAVGCVQAMHYPCSIDLLIEMAFAIGQSSARVYFTLQKRGQQGARCGCGRRRGTRRRRLRRRLALGFRFYPTEEELICFYLRNKLDGLHDDIECVIPVFDIYSVDPLQLSETT |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0777000 | SBH | 0.633956 | 0.667374 | 1.664865 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g03540 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0777000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0009220 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0009160 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0009100 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0107800 | RBH | 0 | 0.1906715 | 0.0551335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0108400 | RBH | 0 | 0.0483665 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0008980 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0009060 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0009040 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G009010 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0008890 | RBH | 0.000000 | 0.000000 | 0.000000 |
