Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0777000 | OGI:03090200 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:32234319-32236419 | ||||||||
| Gene Symbol | NAC56, ONAC056, ONAC56, OsSWN5, NAC66, ONAC066, ONAC66, NAC76, ONAC076, ONAC76, NAC77, ONAC077, ONAC77, NAC78, ONAC078, ONAC78 | ||||||||||
| DNA seq | AATATCTCAAGAGAGCTAGCTAGAGCTCCATTTACAACCATTACAAGATTGCATCAGAGAAGATATCTTCATAGATAATTGTTGGAGCAAGAACACAAGAAAACACGTAGGTTCAATTATAATCGATCGTGGAGATGGTGACCAGCAAGGAGTTTGCAAGGGATCAGGCGGCCATGGATCAGAAGATCAAGAGCGACGTCGGCGAGGTGGTGCTCGCCGGAGACGAGGAAGAAGACGGGGACGTGGTGCTCCCGGGGTTCAGGTTCCACCCGACCGACGAGGAGCTCGTCACGTTCTACCTCCGGCGGAAGGTGGCGAGGAAGTCTCTCAGTATAGAGATCATCAAGGAGATGGACATCTACAAGCACGATCCATGGGATCTCCCCAGTAAGTGCATCCCCAATTAATTTGACAAATAACCTCAAACACAAATCATTTTCAAAATAATTGAGCTAAATTCTGTGTTTGTGTTTGAATGAATGGAATGATTTTGTGCAGATGCGAGCACGGTAGGTGGAGAGAAGGAGTGGTACTTCTTCTGCCTGAGAGGGAGGAAGTACAGGAACAGCATCAGGCCCAACAGGGTGACGGGATCCGGGTTCTGGAAGGCGACGGGGATCGACCGGCCGATCTACTCCGCCGCCGTCAACAGCAACTCCGGCGAGTCGATCGGGCTGAAGAAGTCGCTCGTCTACTACCGCGGCAGCGCCGGCAAGGGCACCAAGACCGACTGGATGATGCACGAGTTCCGCCTCCCGCCGGCGATCGCCGCCGCCGACGCCTCCCCGTGCATGCAAGAAGCTGTAAGCACGCACTCCCATGCTCTCATGCTCGTTCGTTCTCCTTCTCCATCGTCGTCAAGGCCTCGTGTACTCGATCCCATGTACGTAAGAAGTGCATTCGTAATGGGAGAATTACCCAAACTCAGCCTGGAGAGAGATGGAGAATTACCCAGACTCAACCTGGACGAGAGAGATGGGTCAGACTAGAGGGATACGAGCAACCAAACACACCATATCCATATCCGGTTCTCCTCATCTGTGACAGATCACAACTACGTACAATTTGATAGTGTGGAGTACAATATCATCTGCAATACTTTACATCACCAAATCGTCTTAATATTTTTTTTCAAGCTAAGTTCAGCAGTTCTTTCGAGATTACAGGCCTCCTTTTGAACGAAGAAATTTTGCGAAAATTCTACAAAAATTGAACTAATCCATGTGAAAGTCCTACTGAAATTCCCACGTTTTAAAGGAGTACTGGACATCCTCTCACGTTCTGACGTGTTTCTAGTATTCTACCGATTGCCATTTCTAACCGATAAGAGTACAGCCTCCTAATAGCATTGACCTCTAACTTGTGCACTTCTGACTGAAAAAAATGCAGGAGGTCTGGACCATCTGCAGAATCTTCAAGAGAAGCATCACCTACAGGAAGCAGCAGCAGCAGCAGGCCTGGAGGCCGCCGGCGACGGTGACCGTCAAGGCCCCACCGCCGGGGGACTCGAGCTCCAACACCGGCAGCTTCGAGTCGGACGGCGGCGGCGACGAGTTCATGAACTGCGGCCTGACTCCGGCCATCTCCCAGCAGCAGCAGCACGGCGGCCGTCATCAGATGATGAGCACGATGAGCTGCAACGGCGGCTACTTCTTCAACGACGGCATCCATCACAGCCACAGCCACCACAAGCTTCATAGTCAATGGGGCTCCCTACAAATGGCGCCGCCGGAGCCGAAGCCGGAGCCGGAGCAGAAGCCTCTGAGCTCGCCGGCGATGACGATCGCCTTCCATCAAAACGACCATGGCTTCCCCGCCGCCGCCGCGGATTTCTACAAGGATGGGTACTTGGAAGAGATTGCGAGGATGATGGAGGTGGCTGATCCAAGTCCAACAGGATTCTATGACTGTAGATATTGATCAGTAGGAACAGGGTTTCAGAATAGATGCTAGATATGCAGAATTCGCCGACAAGAACAGTGCCCCCTTTGTGTGAGAGGCTGACATGTAGGGCCCATGCTGCAGAGGCTGCTATCACTATTAGTCTTGTACTTTTGTTTTCTGATCTAATATATACACTCCAGATGGGATGTGAACTGTC
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| CDS seq | ATGGTGACCAGCAAGGAGTTTGCAAGGGATCAGGCGGCCATGGATCAGAAGATCAAGAGCGACGTCGGCGAGGTGGTGCTCGCCGGAGACGAGGAAGAAGACGGGGACGTGGTGCTCCCGGGGTTCAGGTTCCACCCGACCGACGAGGAGCTCGTCACGTTCTACCTCCGGCGGAAGGTGGCGAGGAAGTCTCTCAGTATAGAGATCATCAAGGAGATGGACATCTACAAGCACGATCCATGGGATCTCCCCAATGCGAGCACGGTAGGTGGAGAGAAGGAGTGGTACTTCTTCTGCCTGAGAGGGAGGAAGTACAGGAACAGCATCAGGCCCAACAGGGTGACGGGATCCGGGTTCTGGAAGGCGACGGGGATCGACCGGCCGATCTACTCCGCCGCCGTCAACAGCAACTCCGGCGAGTCGATCGGGCTGAAGAAGTCGCTCGTCTACTACCGCGGCAGCGCCGGCAAGGGCACCAAGACCGACTGGATGATGCACGAGTTCCGCCTCCCGCCGGCGATCGCCGCCGCCGACGCCTCCCCGTGCATGCAAGAAGCTGAGGTCTGGACCATCTGCAGAATCTTCAAGAGAAGCATCACCTACAGGAAGCAGCAGCAGCAGCAGGCCTGGAGGCCGCCGGCGACGGTGACCGTCAAGGCCCCACCGCCGGGGGACTCGAGCTCCAACACCGGCAGCTTCGAGTCGGACGGCGGCGGCGACGAGTTCATGAACTGCGGCCTGACTCCGGCCATCTCCCAGCAGCAGCAGCACGGCGGCCGTCATCAGATGATGAGCACGATGAGCTGCAACGGCGGCTACTTCTTCAACGACGGCATCCATCACAGCCACAGCCACCACAAGCTTCATAGTCAATGGGGCTCCCTACAAATGGCGCCGCCGGAGCCGAAGCCGGAGCCGGAGCAGAAGCCTCTGAGCTCGCCGGCGATGACGATCGCCTTCCATCAAAACGACCATGGCTTCCCCGCCGCCGCCGCGGATTTCTACAAGGATGGGTACTTGGAAGAGATTGCGAGGATGATGGAGGTGGCTGATCCAAGTCCAACAGGATTCTATGACTGTAGATATTGA
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| Protein seq | MVTSKEFARDQAAMDQKIKSDVGEVVLAGDEEEDGDVVLPGFRFHPTDEELVTFYLRRKVARKSLSIEIIKEMDIYKHDPWDLPNASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSAAVNSNSGESIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPAIAAADASPCMQEAEVWTICRIFKRSITYRKQQQQQAWRPPATVTVKAPPPGDSSSNTGSFESDGGGDEFMNCGLTPAISQQQQHGGRHQMMSTMSCNGGYFFNDGIHHSHSHHKLHSQWGSLQMAPPEPKPEPEQKPLSSPAMTIAFHQNDHGFPAAAADFYKDGYLEEIARMMEVADPSPTGFYDCRY |
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| Function | Transcription factor JUNGBRUNNEN 1 [UniProtKB/Swiss-Prot:Q9SK55] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0777000 | OsNip_03t0777000-01 | Chr03 | 32234319 | 32236419 | + | RAP2018-11-26 | ||
| CDS seq | ATGGTGACCAGCAAGGAGTTTGCAAGGGATCAGGCGGCCATGGATCAGAAGATCAAGAGCGACGTCGGCGAGGTGGTGCTCGCCGGAGACGAGGAAGAAGACGGGGACGTGGTGCTCCCGGGGTTCAGGTTCCACCCGACCGACGAGGAGCTCGTCACGTTCTACCTCCGGCGGAAGGTGGCGAGGAAGTCTCTCAGTATAGAGATCATCAAGGAGATGGACATCTACAAGCACGATCCATGGGATCTCCCCAATGCGAGCACGGTAGGTGGAGAGAAGGAGTGGTACTTCTTCTGCCTGAGAGGGAGGAAGTACAGGAACAGCATCAGGCCCAACAGGGTGACGGGATCCGGGTTCTGGAAGGCGACGGGGATCGACCGGCCGATCTACTCCGCCGCCGTCAACAGCAACTCCGGCGAGTCGATCGGGCTGAAGAAGTCGCTCGTCTACTACCGCGGCAGCGCCGGCAAGGGCACCAAGACCGACTGGATGATGCACGAGTTCCGCCTCCCGCCGGCGATCGCCGCCGCCGACGCCTCCCCGTGCATGCAAGAAGCTGAGGTCTGGACCATCTGCAGAATCTTCAAGAGAAGCATCACCTACAGGAAGCAGCAGCAGCAGCAGGCCTGGAGGCCGCCGGCGACGGTGACCGTCAAGGCCCCACCGCCGGGGGACTCGAGCTCCAACACCGGCAGCTTCGAGTCGGACGGCGGCGGCGACGAGTTCATGAACTGCGGCCTGACTCCGGCCATCTCCCAGCAGCAGCAGCACGGCGGCCGTCATCAGATGATGAGCACGATGAGCTGCAACGGCGGCTACTTCTTCAACGACGGCATCCATCACAGCCACAGCCACCACAAGCTTCATAGTCAATGGGGCTCCCTACAAATGGCGCCGCCGGAGCCGAAGCCGGAGCCGGAGCAGAAGCCTCTGAGCTCGCCGGCGATGACGATCGCCTTCCATCAAAACGACCATGGCTTCCCCGCCGCCGCCGCGGATTTCTACAAGGATGGGTACTTGGAAGAGATTGCGAGGATGATGGAGGTGGCTGATCCAAGTCCAACAGGATTCTATGACTGTAGATATTGA
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| Protein seq | MVTSKEFARDQAAMDQKIKSDVGEVVLAGDEEEDGDVVLPGFRFHPTDEELVTFYLRRKVARKSLSIEIIKEMDIYKHDPWDLPNASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSAAVNSNSGESIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPAIAAADASPCMQEAEVWTICRIFKRSITYRKQQQQQAWRPPATVTVKAPPPGDSSSNTGSFESDGGGDEFMNCGLTPAISQQQQHGGRHQMMSTMSCNGGYFFNDGIHHSHSHHKLHSQWGSLQMAPPEPKPEPEQKPLSSPAMTIAFHQNDHGFPAAAADFYKDGYLEEIARMMEVADPSPTGFYDCRY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.633956 | 0.667374 | 1.664865 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g56580 | RBH | 0.377376 | 0.395113 | 0.377248 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0777000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0036710 | RBH | 0.0 | 0.000000 | 0.445684 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0036400 | RBH | 0.090341 | 0.0 | 1.475298 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0036470 | RBH | 0.287276 | 0.0 | 3.020249 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0036750 | RBH | 0.100230 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0036260 | RBH | 2.175956 | 2.183123 | 1.581480 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0549800 | RBH | 1.4671325 | 1.5126565 | 0.198705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0036060 | RBH | 0.131627 | 0.0 | 0.292169 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0550700 | RBH | 1.4333425 | 2.399694 | 0.49644 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0036550 | RBH | 0.057933 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0036560 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0036210 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0036300 | RBH | 0.128899 | 0.0 | 0.482957 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0036260 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G036050 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0035830 | RBH | 0.332341 | 0.0 | 4.385679 |
