Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_02g0019460 OGI:02055340 | 15/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr02:19247375-19254017
Gene Symbol Rp120, OsTSN, TSN, OsTudor-SN
DNA seq

ggcaatcttgggatacctcttaattgactgcgctctcggtattatgttgtgtctacaaagaactgcagtgcaccaagtacacgacattattaagtttaggggaaaaacaatgtatcttaacctcaacattacggtgtaaaacggaataatagttcagcatcaagcaacagtgctcaaactaaggaagtttcgcctcgctaagttctgttctaactgcataaataaggtaatcctcattttctttctctatgtttttcatctaaagctcccggtagagtctgacccggtgtccaaaacttgatgatagcttaccgacgccattgctgtcttgagcagccttctctcatctaccgacgccctccagttctcctagccgctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagcctttccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctagtatcccatctcttgcttctttcaagccgagcaagcccttcctgcataaacagaatgggaatattagcaacgaagacaatttcacatatctctgtgactagtttgcaagcagccttcaatctcaaacagaagcaatgttgagtagcattcatatgtgacagcagactatgcagaagctaaccgacaactaatttaagatcaccacaattcataatgttaagtagcaagtagcacgaacctcaagcatggtagcattgatgctggtttctgtctctgcgtcaaccagtgtaacaatcagaatagttccagtgccttgtcccttggactttccaccagaagtatcacgctcttcaatcattgccctgtattgtttttggctgttgagcaagcaatcattcagatagactgctgcttcatggccaaaatcatcttctaggttgggcacttttatgaaggcaaggctgcacaactgagcaagagcaggcgaagaggaaattgatgggtcagcaggccgtatgcgactgtaaggaacgacttcttggttgccatagtcaatgtagaatacttcaaacttgtcgtcttgagatgatacagctcctcgaggtccattcacaatctgcagatcagttaaaatggatatacttcctaattatttttgaaaaccagaaactagaaacgggaatgttcaacttaacaagtccaggactaaaatggttcataagaataaaacatgagtttgtgcaatttcctagagatgatcccatggatgatggatcatgtaattaaaacaacaggatgaaatcactagctgtttaggcaatcaacagcagaacattagcgaagctatgaggtaaaaacaacattggcataaaacactaatgccccaagtcccttaaatattcaactaaagaatatatcatctaagtcccttttatccaatccttcattttagcaggaacacaagtttgagcaagtcaaatgaattacaatggattctaacaatatcacccatttcctgggtccaaattaactcaagtggcccaaacatttatgaaaataagcaattactcaattggtatgacccaccacttgtagaaatttttacttgactatacagaacagctaaccaaGggaacaattgatttgcaaagatagcatattatcattctaaagtcacaacacaattaatgccattaaaccccctttgcaaggaaaaatgtaaataccaaaagaaattttgtgaagttctagtaagctgcttaggttagcataaacctaaaccatgaccccaacacataattagttttgacttgcaacatagaagtgagacatacaggcaactttcaagatcaggatagaagtgaaacgtaccattgctctattccaggagttgtcagcactaaactgagcaagaactatttcccccttcacaggattaaaagcaccaataacaggtgcatctttaagttttaaagatgcaagctgttgttgaatggaagccactctatggtcaccaactgtttggacatagaactttccaccaccaaggacttcagttacaacaacctgaatatggaaaccaggttaacagtttgtttacaaaatggcaagtctgtacattccaatatattcttgatcaacaaaccttgagaatttccttttgtttggattcagatgcagatccattggaaacttcttcaccctctacataattctcccagatcttgaaaaagaaaaggatgtcagcatgttttctccttgtgtagttcaagaatagaagtggttaccttgagtttctgctgctttgcagactgttcagccctcattagaacatttgcatccggaatcctatccaagccaaatgaactaagcttggccagaccagcctccagaagaacagaagccatgttggttttggactcccataaggaacctaagaatgtcccagttctatcaactgcttcaacctctatctgtagaatcacatggtattatttagacatcgaagccatggaggtggattaaccaaagatgcacaagagtcatacctccacatctcgctgtagaattctcctcctcatcaaagcaatagcttcgttcgagtagggctcatctttaccagggcatctaacaccagagaaagagaaggcaatgctgcaagtctccttaggaattgttagtttgaaacggtggccactgaagacatattcaacaattgcggaatgtcttctgttccgctgtaagaaaggaaggaagtctctggccttctttgctgaaacctgagcgcataggaactacgagttaataaaggtgccaaaggaaaagtaaaagtaaaagaacaagcaagagtgccaaaccgttgtcaagtctgttatgtgcatgacaggtgattcttttgcagaatgaactcctttctttgctttctcagctcgtgattcagccgccaacagcaggtcaaaatagtgtgacctttcttcgtagtcccgatgtttagatgttctagcaaagccccttgagagcagagtctcagcaatattgataccaggttggttgcctgagcttggaatggaagaaacatcatcaccatcagcctgcgaaggtgaaccaagaaaaaccgacccataatccaaaaccctggcatcagctgtgtttgttgtgggctgtccatccacagtgctgatccttctagagtattccatctcaacagtcacctggaaataggaaggagaaaaaatcaataaattttcaacaaaggtaacaacttgttatggaacttctgatggaatatctcaaaacctatgtacatacttgcttgccaatcaaccttgtgcgcaagaattccttggcttcacgagcaaaattatcaggcttctcatctctacgagggttgcccattttaggagctctaatgcttgaaagattaacccggcgttctgcagaaggacttccgtaaggagctgcgtcatcagcaacaatgatgcaatccccactcacaacctctacaacctatgaaaggatcaacacaaagcaaattagcttcaatcgcatgatcatgttgaatacactacttgtgagaacagggaacccacttttccagtgaatttctggtcgtggattggcttcgagtttgtcactggtggcttaaatcctgtccaaattctcaactggtccttcttagcctgaagctcagcattcttcagctttatttttgcatcaacgtccatcatgttggcactccactcaacatacttggcaagaccctgcataattaatcatacaaaagaatttcaatgcaagcagatctcattattaaaataaatcttaaaaagaatcatgtgagtcaaatgaaagatagtggataaataattgatcgtacattttcaacaagctcaagggccagatccttcaatgtatccccatcagagtaatacactgagccaattatattgctgaaactatctgtgccttccaccacaattcgcacctagaggaaagttcaaaagagaacagaaggaacttatgaaatatagtaattattgtttgcaaagaggattaaaaactttgaatcatgatatgtcttacatctctattgagaacccgtgtctctgtgaagtgcttagcttctattccaaacctgtccggtggaatttcagtagaaaccgctgctgcggcaagcctttgggctgtagtcagtggtgctggagcttcctcagaatctccaccgtttgtagcgccatcagcagtactctctgctgcagccaccactgtaggattcggtgggcgcctccccatggatggagactacatttttgtctaatcaacattcacctttctaaacatgaaaaaagaaacaatagtagacaaaagggtccatgacaagcatacctgaactccagcaacatatatctgaacaaattggaaacttgggagcaagtaaacacgaactgtactgccatcacgaacttgttcaacaatggcttccagactcttgcctttattcgcaactgcaaaaccctttgcatcaaaaccactagcttcaccaattgctgatggtggaagatctcttattgattcttcagcagcaccaggttcctgaaagtttaaaaagaacatgcataaaaaagcaaacaataaagcattcatctcttgcagtacaaagaaaaagggggagggggcagaaacaaaaagatttgctaaccttgctccaacgacctaaaccctgctgcttagcaacttcctccaaccttagcagctcagtaagatatggactcggttcaccgccctttgggccttgctcctttacccttgcccatcctgcagcaattatcgagtaggcaacattcttgtcaccgaggtaaacagtaccaaattctcgtccaacatttggagctgtgtagtccactctgaatgtgacctcctgtaacatgtttgaatttttcattggtaacagggaaactggcatgttttctacaaacacaatcgatatctatgcatttaagtaaattcaaagaagatctaaaattcacatggagtacctttcctatgcagagtttccttagaaactccctgctttcccaagcaaatggttcatccactccaccacggcgagccTtgagcagcacaaagttttagtttcaatacataaagcaaaaagggagggaaagactggagaataagaataaattcataagttttgaactacacgagaaaatataaaaccatagcgtaggaatattaatgcatgcggtggtggaaagagtccgattgtcactattatactgcctctggttttatttgtttgacattggtcataTaaaaaaggaaggatggagtatttccattagttttaggggttacacaaaagtcgtccactttggaacagaccaaacacttccacaaattcatgagacaaatgaacctagaaaatgtgttatattgtctgactacatcaagtccatataaatcttaccagccttggggccatgaggtatgacagagtaatcgacttctcaggcggcgggacatccgccttggtgctccccatgatgagaagacagtccccagaagtcacacccttcaccttacccctcagccatccagacgctccagtggctgacgccatgatagtaagctacaccctgcgatcaaacgaaaggatagaaccagcttagccaaagccaaatttagtatgcctgggctaacctatcgtaccaacccacaaattttctcctatctgaaaatgaattacgatagataccccccaccctaaacaagaagcagctaactatcatcaatcagatattcattcaggaggaacgtaagtggtcagcacgtatcacgctcttatcctacactggtatggctagaaacgagcatgtttctctaaaaggaaacttggggaaaattgcccccgaaagatttggcccacaccccaccccaaataactgcaagattccaaccactccaggggtcaaaagctcaaaccccggccacctttctgcagcgatggcccccagtgcacggcagagtaaaccacccgcaatgcgcaagcacgtacagatgcaaatctcacggatacgccacgaagaagaagaaaaaaaaagctgcaacggtagcagcacgcgcagatctgacgcctagcccatccagaaacccacgcgatctcgtgaaattcccggcgtccggaaccagaccccccgagcaaaacggcggagcagagtagagccgccgccgccgccgcccgcccgaatcgacacccgcgacccacagatcgggcggcggcgggaccccagaccgccagatctgagccccggcacacccaacaacgcacgagatggagacggaggcatcggatcaggggggagcggctcacctcacctcagctcagctcggcgcgatcgcctcgagagagagggcggggagcggggtgtagacggctagatccgtccggcggcgacggcggcggcggtgccctctccacgagcccacgatcccgtcgccgacgacgcagcggcgcggcgaggcgaggggagagagcgcgtgagaggtttttggggtgtagcgatgcgcggaacggaggagatgggtagggaggaggcttggttttatattgggcactcctccctcccacacactgcgttaattaccc

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CDS seq

atggcgtcagccactggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctcatcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatacctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaaactctgcataggaaaggaggtcacattcagagtggactacacagctccaaatgttggacgagaatttggtactgtttacctcggtgacaagaatgttgcctactcgataattgctgcaggatgggcaagggtaaaggagcaaggcccaaagggcggtgaaccgagtccatatcttactgagctgctaaggttggaggaagttgctaagcagcagggtttaggtcgttggagcaaggaacctggtgctgctgaagaatcaataagagatcttccaccatcagcaattggtgaagctagtggttttgatgcaaagggttttgcagttgcgaataaaggcaagagtctggaagccattgttgaacaagttcgtgatggcagtacagttcgtgtttacttgctcccaagtttccaatttgttcagatatatgttgctggagttcagtctccatccatggggaggcgcccaccgaatcctacagtggtggctgcagcagagagtactgctgatggcgctacaaacggtggagattctgaggaagctccagcaccactgactacagcccaaaggcttgccgcagcagcggtttctactgaaattccaccggacaggtttggaatagaagctaagcacttcacagagacacgggttctcaatagagatgtgcgaattgtggtggaaggcacagatagtttcagcaatataattggctcagtgtattactctgatggggatacattgaaggatctggcccttgagcttgttgaaaatggtcttgccaagtatgttgagtggagtgccaacatgatggacgttgatgcaaaaataaagctgaagaatgctgagcttcaggctaagaaggaccagttgagaatttggacaggatttaagccaccagtgacaaactcgaagccaatccacgaccagaaattcactggaaaagttgtagaggttgtgagtggggattgcatcattgttgctgatgacgcagctccttacggaagtccttctgcagaacgccgggttaatctttcaagcattagagctcctaaaatgggcaaccctcgtagagatgagaagcctgataattttgctcgtgaagccaaggaattcttgcgcacaaggttgattggcaagcaagtgactgttgagatggaatactctagaaggatcagcactgtggatggacagcccacaacaaacacagctgatgccagggttttggattatgggtcggtttttcttggttcaccttcgcaggctgatggtgatgatgtttcttccattccaagctcaggcaaccaacctggtatcaatattgctgagactctgctctcaaggggctttgctagaacatctaaacatcgggactacgaagaaaggtcacactattttgacctgctgttggcggctgaatcacgagctgagaaagcaaagaaaggagttcattctgcaaaagaatcacctgtcatgcacataacagacttgacaacggtttcagcaaagaaggccagagacttccttcctttcttacagcggaacagaagacattccgcaattgttgaatatgtcttcagtggccaccgtttcaaactaacaattcctaaggagacttgcagcattgccttctctttctctggtgttagatgccctggtaaagatgagccctactcgaacgaagctattgctttgatgaggaggagaattctacagcgagatgtggagatagaggttgaagcagttgatagaactgggacattcttaggttccttatgggagtccaaaaccaacatggcttctgttcttctggaggctggtctggccaagcttagttcatttggcttggataggattccggatgcaaatgttctaatgagggctgaacagtctgcaaagcagcagaaactcaagatctgggagaattatgtagagggtgaagaagtttccaatggatctgcatctgaatccaaacaaaaggaaattctcaaggttgttgtaactgaagtccttggtggtggaaagttctatgtccaaacagttggtgaccatagagtggcttccattcaacaacagcttgcatctttaaaacttaaagatgcacctgttattggtgcttttaatcctgtgaagggggaaatagttcttgctcagtttagtgctgacaactcctggaatagagcaatgattgtgaatggacctcgaggagctgtatcatctcaagacgacaagtttgaagtattctacattgactatggcaaccaagaagtcgttccttacagtcgcatacggcctgctgacccatcaatttcctcttcgcctgctcttgctcagttgtgcagccttgccttcataaaagtgcccaacctagaagatgattttggccatgaagcagcagtctatctgaatgattgcttgctcaacagccaaaaacaatacagggcaatgattgaagagcgtgatacttctggtggaaagtccaagggacaaggcactggaactattctgattgttacactggttgacgcagagacagaaaccagcatcaatgctaccatgcttgaggaagggcttgctcggcttgaaagaagcaagagatgggatactagggagagaaaggctgctctccagaatctggaacagttccaggagaaagcaaagaaggaaaggctgcagatctggcagtatggtgatgttgaatctgacgaggaagagcaagctccagcggctaggagaactggagggcgtcggtag

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Protein seq

MASATGASGWLRGKVKGVTSGDCLLIMGSTKADVPPPEKSITLSYLMAPRLARRGGVDEPFAWESREFLRKLCIGKEVTFRVDYTAPNVGREFGTVYLGDKNVAYSIIAAGWARVKEQGPKGGEPSPYLTELLRLEEVAKQQGLGRWSKEPGAAEESIRDLPPSAIGEASGFDAKGFAVANKGKSLEAIVEQVRDGSTVRVYLLPSFQFVQIYVAGVQSPSMGRRPPNPTVVAAAESTADGATNGGDSEEAPAPLTTAQRLAAAAVSTEIPPDRFGIEAKHFTETRVLNRDVRIVVEGTDSFSNIIGSVYYSDGDTLKDLALELVENGLAKYVEWSANMMDVDAKIKLKNAELQAKKDQLRIWTGFKPPVTNSKPIHDQKFTGKVVEVVSGDCIIVADDAAPYGSPSAERRVNLSSIRAPKMGNPRRDEKPDNFAREAKEFLRTRLIGKQVTVEMEYSRRISTVDGQPTTNTADARVLDYGSVFLGSPSQADGDDVSSIPSSGNQPGINIAETLLSRGFARTSKHRDYEERSHYFDLLLAAESRAEKAKKGVHSAKESPVMHITDLTTVSAKKARDFLPFLQRNRRHSAIVEYVFSGHRFKLTIPKETCSIAFSFSGVRCPGKDEPYSNEAIALMRRRILQRDVEIEVEAVDRTGTFLGSLWESKTNMASVLLEAGLAKLSSFGLDRIPDANVLMRAEQSAKQQKLKIWENYVEGEEVSNGSASESKQKEILKVVVTEVLGGGKFYVQTVGDHRVASIQQQLASLKLKDAPVIGAFNPVKGEIVLAQFSADNSWNRAMIVNGPRGAVSSQDDKFEVFYIDYGNQEVVPYSRIRPADPSISSSPALAQLCSLAFIKVPNLEDDFGHEAAVYLNDCLLNSQKQYRAMIEERDTSGGKSKGQGTGTILIVTLVDAETETSINATMLEEGLARLERSKRWDTRERKAALQNLEQFQEKAKKERLQIWQYGDVESDEEEQAPAARRTGGRR

Function Ribonuclease TUDOR 1 [UniProtKB/Swiss-Prot:Q8VZG7]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_02g0019460 OsKeNa_02g0019460.01 Chr02 19247375 19254017 - NAM
CDS seq

atggcgtcagccactggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctcatcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatacctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaaactctgcataggaaaggaggtcacattcagagtggactacacagctccaaatgttggacgagaatttggtactgtttacctcggtgacaagaatgttgcctactcgataattgctgcaggatgggcaagggtaaaggagcaaggcccaaagggcggtgaaccgagtccatatcttactgagctgctaaggttggaggaagttgctaagcagcagggtttaggtcgttggagcaaggaacctggtgctgctgaagaatcaataagagatcttccaccatcagcaattggtgaagctagtggttttgatgcaaagggttttgcagttgcgaataaaggcaagagtctggaagccattgttgaacaagttcgtgatggcagtacagttcgtgtttacttgctcccaagtttccaatttgttcagatatatgttgctggagttcagtctccatccatggggaggcgcccaccgaatcctacagtggtggctgcagcagagagtactgctgatggcgctacaaacggtggagattctgaggaagctccagcaccactgactacagcccaaaggcttgccgcagcagcggtttctactgaaattccaccggacaggtttggaatagaagctaagcacttcacagagacacgggttctcaatagagatgtgcgaattgtggtggaaggcacagatagtttcagcaatataattggctcagtgtattactctgatggggatacattgaaggatctggcccttgagcttgttgaaaatggtcttgccaagtatgttgagtggagtgccaacatgatggacgttgatgcaaaaataaagctgaagaatgctgagcttcaggctaagaaggaccagttgagaatttggacaggatttaagccaccagtgacaaactcgaagccaatccacgaccagaaattcactggaaaagttgtagaggttgtgagtggggattgcatcattgttgctgatgacgcagctccttacggaagtccttctgcagaacgccgggttaatctttcaagcattagagctcctaaaatgggcaaccctcgtagagatgagaagcctgataattttgctcgtgaagccaaggaattcttgcgcacaaggttgattggcaagcaagtgactgttgagatggaatactctagaaggatcagcactgtggatggacagcccacaacaaacacagctgatgccagggttttggattatgggtcggtttttcttggttcaccttcgcaggctgatggtgatgatgtttcttccattccaagctcaggcaaccaacctggtatcaatattgctgagactctgctctcaaggggctttgctagaacatctaaacatcgggactacgaagaaaggtcacactattttgacctgctgttggcggctgaatcacgagctgagaaagcaaagaaaggagttcattctgcaaaagaatcacctgtcatgcacataacagacttgacaacggtttcagcaaagaaggccagagacttccttcctttcttacagcggaacagaagacattccgcaattgttgaatatgtcttcagtggccaccgtttcaaactaacaattcctaaggagacttgcagcattgccttctctttctctggtgttagatgccctggtaaagatgagccctactcgaacgaagctattgctttgatgaggaggagaattctacagcgagatgtggagatagaggttgaagcagttgatagaactgggacattcttaggttccttatgggagtccaaaaccaacatggcttctgttcttctggaggctggtctggccaagcttagttcatttggcttggataggattccggatgcaaatgttctaatgagggctgaacagtctgcaaagcagcagaaactcaagatctgggagaattatgtagagggtgaagaagtttccaatggatctgcatctgaatccaaacaaaaggaaattctcaaggttgttgtaactgaagtccttggtggtggaaagttctatgtccaaacagttggtgaccatagagtggcttccattcaacaacagcttgcatctttaaaacttaaagatgcacctgttattggtgcttttaatcctgtgaagggggaaatagttcttgctcagtttagtgctgacaactcctggaatagagcaatgattgtgaatggacctcgaggagctgtatcatctcaagacgacaagtttgaagtattctacattgactatggcaaccaagaagtcgttccttacagtcgcatacggcctgctgacccatcaatttcctcttcgcctgctcttgctcagttgtgcagccttgccttcataaaagtgcccaacctagaagatgattttggccatgaagcagcagtctatctgaatgattgcttgctcaacagccaaaaacaatacagggcaatgattgaagagcgtgatacttctggtggaaagtccaagggacaaggcactggaactattctgattgttacactggttgacgcagagacagaaaccagcatcaatgctaccatgcttgaggaagggcttgctcggcttgaaagaagcaagagatgggatactagggagagaaaggctgctctccagaatctggaacagttccaggagaaagcaaagaaggaaaggctgcagatctggcagtatggtgatgttgaatctgacgaggaagagcaagctccagcggctaggagaactggagggcgtcggtag

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Protein seq

MASATGASGWLRGKVKGVTSGDCLLIMGSTKADVPPPEKSITLSYLMAPRLARRGGVDEPFAWESREFLRKLCIGKEVTFRVDYTAPNVGREFGTVYLGDKNVAYSIIAAGWARVKEQGPKGGEPSPYLTELLRLEEVAKQQGLGRWSKEPGAAEESIRDLPPSAIGEASGFDAKGFAVANKGKSLEAIVEQVRDGSTVRVYLLPSFQFVQIYVAGVQSPSMGRRPPNPTVVAAAESTADGATNGGDSEEAPAPLTTAQRLAAAAVSTEIPPDRFGIEAKHFTETRVLNRDVRIVVEGTDSFSNIIGSVYYSDGDTLKDLALELVENGLAKYVEWSANMMDVDAKIKLKNAELQAKKDQLRIWTGFKPPVTNSKPIHDQKFTGKVVEVVSGDCIIVADDAAPYGSPSAERRVNLSSIRAPKMGNPRRDEKPDNFAREAKEFLRTRLIGKQVTVEMEYSRRISTVDGQPTTNTADARVLDYGSVFLGSPSQADGDDVSSIPSSGNQPGINIAETLLSRGFARTSKHRDYEERSHYFDLLLAAESRAEKAKKGVHSAKESPVMHITDLTTVSAKKARDFLPFLQRNRRHSAIVEYVFSGHRFKLTIPKETCSIAFSFSGVRCPGKDEPYSNEAIALMRRRILQRDVEIEVEAVDRTGTFLGSLWESKTNMASVLLEAGLAKLSSFGLDRIPDANVLMRAEQSAKQQKLKIWENYVEGEEVSNGSASESKQKEILKVVVTEVLGGGKFYVQTVGDHRVASIQQQLASLKLKDAPVIGAFNPVKGEIVLAQFSADNSWNRAMIVNGPRGAVSSQDDKFEVFYIDYGNQEVVPYSRIRPADPSISSSPALAQLCSLAFIKVPNLEDDFGHEAAVYLNDCLLNSQKQYRAMIEERDTSGGKSKGQGTGTILIVTLVDAETETSINATMLEEGLARLERSKRWDTRERKAALQNLEQFQEKAKKERLQIWQYGDVESDEEEQAPAARRTGGRR

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_02g0019460 OsKeNa_02g0019460.02 Chr02 19247375 19254017 - NAM
CDS seq

atggcgtcagccactggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctcatcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatacctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaaactctgcataggaaaggaggtcacattcagagtggactacacagctccaaatgttggacgagaatttggtactgtttacctcggtgacaagaatgttgcctactcgataattgctgcaggatgggcaagggtaaaggagcaaggcccaaagggcggtgaaccgagtccatatcttactgagctgctaaggttggaggaagttgctaagcagcagggtttaggtcgttggagcaaggaacctggtgctgctgaagaatcaataagagatcttccaccatcagcaattggtgaagctagtggttttgatgcaaagggttttgcagttgcgaataaaggcaagagtctggaagccattgttgaacaagttcgtgatggcagtacagttcgtgtttacttgctcccaagtttccaatttgttcagatatatgttgctggagttcagtctccatccatggggaggcgcccaccgaatcctacagtggtggctgcagcagagagtactgctgatggcgctacaaacggtggagattctgaggaagctccagcaccactgactacagcccaaaggcttgccgcagcagcggtttctactgaaattccaccggacaggtttggaatagaagctaagcacttcacagagacacgggttctcaatagagatgtgcgaattgtggtggaaggcacagatagtttcagcaatataattggctcagtgtattactctgatggggatacattgaaggatctggcccttgagcttgttgaaaatggtcttgccaagtatgttgagtggagtgccaacatgatggacgttgatgcaaaaataaagctgaagaatgctgagcttcaggctaagaaggaccagttgagaatttggacaggatttaagccaccagtgacaaactcgaagccaatccacgaccagaaattcactggaaaagttgtagaggttgtgagtggggattgcatcattgttgctgatgacgcagctccttacggaagtccttctgcagaacgccgggttaatctttcaagcattagagctcctaaaatgggcaaccctcgtagagatgagaagcctgataattttgctcgtgaagccaaggaattcttgcgcacaaggttgattggcaagcaagtgactgttgagatggaatactctagaaggatcagcactgtggatggacagcccacaacaaacacagctgatgccagggttttggattatgggtcggtttttcttggttcaccttcgcaggctgatggtgatgatgtttcttccattccaagctcaggcaaccaacctggtatcaatattgctgagactctgctctcaaggggctttgctagaacatctaaacatcgggactacgaagaaaggtcacactattttgacctgctgttggcggctgaatcacgagctgagaaagcaaagaaaggagttcattctgcaaaagaatcacctgtcatgcacataacagacttgacaacggtttcagcaaagaaggccagagacttccttcctttcttacagcggaacagaagacattccgcaattgttgaatatgtcttcagtggccaccgtttcaaactaacaattcctaaggagacttgcagcattgccttctctttctctggtgttagatgccctggtaaagatgagccctactcgaacgaagctattgctttgatgaggaggagaattctacagcgagatgtggagatagaggttgaagcagttgatagaactgggacattcttaggttccttatgggagtccaaaaccaacatggcttctgttcttctggaggctggtctggccaagcttagttcatttggcttggataggattccggatgcaaatgttctaatgagggctgaacagtctgcaaagcagcagaaactcaagatctgggagaattatgtagagggtgaagaagtttccaatggatctgcatctgaatccaaacaaaaggaaattctcaaggttgttgtaactgaagtccttggtggtggaaagttctatgtccaaacagttggtgaccatagagtggcttccattcaacaacagcttgcatctttaaaacttaaagatgcacctgttattggtgcttttaatcctgtgaagggggaaatagttcttgctcagtttagtgctgacaactcctggaatagagcaatgattgtgaatggacctcgaggagctgtatcatctcaagacgacaagtttgaagtattctacattgactatggcaaccaagaagtcgttccttacagtcgcatacggcctgctgacccatcaatttcctcttcgcctgctcttgctcagttgtgcagccttgccttcataaaagtgcccaacctagaagatgattttggccatgaagcagcagtctatctgaatgattgcttgctcaacagccaaaaacaatacagggcaatgattgaagagcgtgatacttctggtggaaagtccaagggacaaggcactggaactattctgattgttacactggttgacgcagagacagaaaccagcatcaatgctaccatgcttgaggaagggcttgctcggcttgaaagaagcaagagatgggatactagggagagaaaggctgctctccagaatctggaacagttccaggagaaagcaaagaaggaaaggctgcagatctggcagtatggtgatgttgaatctgacgaggaagagcaagctccagcggctaggagaactggagggcgtcggtag

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Protein seq

MASATGASGWLRGKVKGVTSGDCLLIMGSTKADVPPPEKSITLSYLMAPRLARRGGVDEPFAWESREFLRKLCIGKEVTFRVDYTAPNVGREFGTVYLGDKNVAYSIIAAGWARVKEQGPKGGEPSPYLTELLRLEEVAKQQGLGRWSKEPGAAEESIRDLPPSAIGEASGFDAKGFAVANKGKSLEAIVEQVRDGSTVRVYLLPSFQFVQIYVAGVQSPSMGRRPPNPTVVAAAESTADGATNGGDSEEAPAPLTTAQRLAAAAVSTEIPPDRFGIEAKHFTETRVLNRDVRIVVEGTDSFSNIIGSVYYSDGDTLKDLALELVENGLAKYVEWSANMMDVDAKIKLKNAELQAKKDQLRIWTGFKPPVTNSKPIHDQKFTGKVVEVVSGDCIIVADDAAPYGSPSAERRVNLSSIRAPKMGNPRRDEKPDNFAREAKEFLRTRLIGKQVTVEMEYSRRISTVDGQPTTNTADARVLDYGSVFLGSPSQADGDDVSSIPSSGNQPGINIAETLLSRGFARTSKHRDYEERSHYFDLLLAAESRAEKAKKGVHSAKESPVMHITDLTTVSAKKARDFLPFLQRNRRHSAIVEYVFSGHRFKLTIPKETCSIAFSFSGVRCPGKDEPYSNEAIALMRRRILQRDVEIEVEAVDRTGTFLGSLWESKTNMASVLLEAGLAKLSSFGLDRIPDANVLMRAEQSAKQQKLKIWENYVEGEEVSNGSASESKQKEILKVVVTEVLGGGKFYVQTVGDHRVASIQQQLASLKLKDAPVIGAFNPVKGEIVLAQFSADNSWNRAMIVNGPRGAVSSQDDKFEVFYIDYGNQEVVPYSRIRPADPSISSSPALAQLCSLAFIKVPNLEDDFGHEAAVYLNDCLLNSQKQYRAMIEERDTSGGKSKGQGTGTILIVTLVDAETETSINATMLEEGLARLERSKRWDTRERKAALQNLEQFQEKAKKERLQIWQYGDVESDEEEQAPAARRTGGRR

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_02g0019460 OsKeNa_02g0019460.03 Chr02 19247425 19253941 - IsoSeq
CDS seq

atggacagcccacaacaaacacagctgatgccagggttttggattatgggtcggtttttcttggttcaccttcgcaggctgatggtgatgatgtttcttccattccaagctcaggcaaccaacctggtatcaatattgctgagactctgctctcaaggggctttgctagaacatctaaacatcgggactacgaagaaaggtcacactattttgacctgctgttggcggctgaatcacgagctgagaaagcaaagaaaggagttcattctgcaaaagaatcacctgtcatgc

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Protein seq

MDSPQQTQLMPGFWIMGRFFLVHLRRLMVMMFLPFQAQATNLVSILLRLCSQGALLEHLNIGTTKKGHTILTCCWRLNHELRKQRKEFILQKNHLSC

OsKeNa_02g0019460.03OsKeNa_02g0019460.02OsKeNa_02g0019460.01AS19248000 bp19249000 bp19250000 bp19251000 bp19252000 bp19253000 bp19254000 bp19255000 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A5 Chr02 19253007 19253747 - OsKeNa_02g0019460.02 OsKeNa_02g0019460.02,OsKeNa_02g0019460.01 All
A5 Chr02 19253007 19253743 - OsKeNa_02g0019460.02 OsKeNa_02g0019460.02,OsKeNa_02g0019460.03 All
A5 Chr02 19253007 19253747 - OsKeNa_02g0019460.03 OsKeNa_02g0019460.01,OsKeNa_02g0019460.03 All

Expression

Leaf Root Panicle
FPKM 1.077752 35.751858 15.703512

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_02g0523500 RBH 13.717936 9.504002 49.221592
Nipponbare | IRGSP 1.0 | MSU LOC_Os02g32350 RBH 6.377776 4.192022 8.805157
Nipponbare | IRGSP 1.0 | RAP-db Os02g0523500 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0019350 RBH 2.425997 68.144257 36.892414
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0012860 RBH 0.0 0.0 1.724653
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0019400 RBH 3.735179 77.344902 50.770157
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0019180 RBH 0.656585 4.922000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0019140 RBH 31.250313 197.297241 88.274086
Minghui 63 | MH63RS3 | HZAU OsMH63_02G0316800 RBH 34.422871 90.828495 62.0618245
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_02g0018860 RBH 1.078153 10.576692 6.810346
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_02G0336500 SBH 33.9237365 64.1799505 58.400566
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0019390 RBH 1.044478 2.800501 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_02g0019110 RBH 3.026532 125.498917 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_02g0019530 RBH 27.924608 136.918411 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_02g0019250 RBH 4.057185 12.620491 8.458858
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_02g0019040 RBH 0.701544 85.827805 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G019470 RBH 1.737291 69.655777 21.307722
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_02g0019180 RBH 4.451912 175.253006 44.802242
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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