Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0019250 | OGI:02055340 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:20291735-20298395 | ||||||||
| Gene Symbol | Rp120, OsTSN, TSN, OsTudor-SN | ||||||||||
| DNA seq | ggcaatcttgggatacctctttaagttcaatcctgaattttaattgactgcgctctcggtattatgttgtgtctacaaagaactgcagtgcaccaagtacacgacattattaagtttaggggaaaaacaatgtatcttaacctcaacattacggtgtaaaacggaataatagttcagcatcaagcaacagtgctcaaactaaggaagtttcgcctcgctaagttctgttctaactgcataaataaggtaatcctcattttctctctatgtttttcatctaaagctcccggtagagtctgacccggtgtccaaaacttgatgatagcttaccgacgccattgctgtcttgagcagccttctctcatctaccgacgccctccagttctcctagccgctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagcctttccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctagtatcccatctcttgcttctttcaagccgagcaagcccttcctgcataaacagaatgggaatattagcaacgaagacaatttcacatatctctgtgactagtttgcaagcagccttcaatctcaaacagaagcaatgttgagtagcattcatatgtgacagcagactatgcagaagctaaccgacaactaatttaagatcaccacaattcataatgttaagtagcaagtagcacgaacctcaagcatggtagcattgatgctggtttctgtctctgcgtcaaccagtgtaacaatcagaatagttccagtgccttgtcccttggactttccaccagaagtatcacgctcttcaatcattgccctgtattgtttttggctgttgagcaagcaatcattcagatagactgctgcttcatggccaaaatcatcttctaggttgggcacttttatgaaggcaaggctgcacaactgagcaagagcaggcgaagaggaaattgatgggtcagcaggccgtatgcgactgtaaggaacgacttcttggttgccatagtcaatgtagaatacttcaaacttgtcgtcttgagatgatacagctcctcgaggtccattcacaatctgcagatcagttaaaatggatatacttcctaattatttttgaaaaccagaaactagaaacgggaatgttcaacttaacaagtccaggactaaaatggttcataagaataaaacatgagttcgtgcaatttcctagagatgatcccatggatgatggatcatgtaattaaaacaacaggatgaaatcactagctgtttaggcaatcaacagcagaacattagcgaagctatgaggtaaaaacaacattggcataaaacactaatgccccaagtcccttaaatattcaactaaagaatatatcatctaagtcccttttatccaatccttcattttagcaggaacacaagtttgagcaagtcaaatgaattacaatggattctaacaatatcacccatttcctgggtccaaattaactcaagtggcccaaacatttatgaaaataagcaattactcaattggtatgacccaccacttgtagaaatttttacttgactatacagaacagctaaccaagggaacaattgatttgcaaagatagcatattatcattctaaagtcacaacacaattaatgccattaaaccccctttgcaaggaaaaatgtaaataccaaaggaaattttgtgaagttctagtaagctgcttaggttagcataaacctaaaccatgaccccaacacataattagttttgacttgcaacatagaagtgagacatacaggcaactttcaagatcaggatagaagtgaaacgtaccattgctctattccaggagttgtcagcactaaactgagcaagaactatttcccccttcacaggattaaaagcaccaataacaggtgcatctttaagttttaaagatgcaagctgttgttgaatggaagccactctttggtcaccaactgtttggacatagaactttccaccaccaaggacttcagttacaacaacctgaatatggaaaccaggttaacagtttgtttacaaaatggcaagtctgtacattccaatatattcttgatcaacaaaccttgagaatttccttttgtttggattcagatgcagatccattggaaacttcttcaccctctacataattctcccagatcttgaaaaagaaaaggatgtcagcatgttttctccttgtgtagttcaagaatagaagtggttaccttgagtttctgctgctttgcagactgttcagccctcattagaacatttgcatccggaatcctatccaagccaaatgaactaagcttggccagaccagcctccagaagaacagaagccatgttggttttggactcccataaggaacctaagaatgtcccagttctatcaactgcttcaacctctatctgtagaatcacatggtattatttagacatcgaagccatggaggtggattaaccaaagatgcacaagagtcatacctccacatctcgctgtagaattctcctcctcatcaaagcaatagcttcgttcgagtagggctcatctttaccagggcatctaacaccagagaaagagaaggcaatgctgcaagtctccttaggaattgttagtttgaaacggtggccactgaagacatattcaacaattgcggaatgtcttctgttccgctgtaagaaaggaaggaagtctctggccttctttgctgaaacctgagcgcataggaactacgagttaataaaggtgccaaaggaaaagtaaaagtaaaagaacaagcaagagtgccaaaccgttgtcaagtctgttatgtgcatgacaggtgattcttttgcagaatgaactcctttctttgctttctcagctcgtgattcagccgccaacagcaggtcaaaatagtgtgacctttcttcgtagtcccgatgtttagatgttctagcaaagccccttgagagcagagtctcagcaatattgataccaggttggttgcctgagcttggaatggaagaaacatcatcaccatcagcctgcgaaggtgaaccaagaaaaaccgacccataatccaaaaccctggcatcagctgtgtttgttgtgggctgtccatccacagtgctgatccttctagagtattccatctcaacagtcacctggaaataggaaggagaaaaaatcaataaattttcaacaaaggtaacaacttgttatggaacttctgatggaatatctcaaaacctatgtacatacttgcttgccaatcaaccttgtgcgcaagaattccttggcttcacgagcaaaattatcaggcttctcatctctacgagggttgcccattttaggagctctaatgcttgaaagattaacccggcgttctgcagaaggacttccgtaaggagctgcgtcatcagcaacaatgatgcaatccccactcacaacctctacaacctatgaaaggatcaacacaaagcaaattagcttcaatcgcatgatcatgttgaatacactacttgtgagaacagggaacccacttttccagtgaatttctggtcgtggattggcttcgagtttgtcactggtggcttaaatcctgtccaaattctcaactggtccttcttagcctgaagctcagcattcttcagctttatttttgcatcaacgtccatcatgttggcactccactcaacatacttggcaagaccctgcataattaatcatacaaaagaatttcaatgcaagcagatctcattattaaaataaatcttaaaaagaatcatgtgagtcaaatgaaaggtagtggataaataattgatcgtacattttcaacaagctcaagggccagatccttcaatgtatccccatcagagtaatacactgagccaattatattgctgaaactatctgtgccttccaccacaattcgcacctagaggaaagttcaaaagagaacagaaggaacttatgaaatatagtaattattgtttgcaaagaggattaaaaactttgaatcatgatatgtcttacatctctattgagaacccgtgtctctgtgaagtgcttagcttctattccaaacctgtccggtggaatttcagtagaaaccgctgctgcggcaagcctttgggctgtagtcagtggtgctggagcttcctcagaatctccaccgtttgtagcgccatcagcagtactctctgctgcagccaccactgtaggattcggtgggcgcctccccatggatggagactacatttttgtctaatcaacattcacctttctaaacatgaaaaaagaaacaatagtagacaaaagggtccatgacaagcatacctgaactccagcaacatatatctgaacaaattggaaacttgggagcaagtaaacacgaactgtactgccatcacgaacttgttcaacaatggcttccagactcttgcctttattcgcaactgcaaaaccctttgcatcaaaaccactagcttcaccaattgctgatggtggaagatctcttattgattcttcagcagcaccaggttcctgaaagtttaaaaagaacatgcataaaaaagcaaacaataaagcattcatctcttgcagtacaaagaaaaagggggagggggcagaaacaaaaagatttgctaaccttgctccaacgacctaaaccctgctgcttagcaacttcctccaaccttagcagctcagtaagatatggactcggttcaccgccctttgggccttgctcctttacccttgcccatcctgcagcaattatcgagtaggcaacattcttgtcaccgaggtaaacagtaccaaattctcgtccaacatttggagctgtgtagtccactctgaatgtgacctcctgtaacatgtttgaatttttcattggtaacagggaaactggcatgttttctacaaacacaatcgatatctatgcatttaagtaaattcaaagaagatctaaaattcacatggagtacctttcctatgcagagtttccttagaaactccctgctttcccaagcaaatggttcatccactccaccacggcgagccttgagcagcacaaagttttagtttcaatacataaagcaaaaagggagggaaagactggagaataagaataaattcataagttttgaactacacgagaaaatataaaaccatagcgtaggaatattaatgcatgcggtggtggaaagagtccgattgtcactattatactgcctctggttttatttgtttgacattggtcatataaaaaaggaaggatggagtatttccattagttttaggggttacacaaaagtcgtccactttggaacagaccaaacacttccacaaattcatgagacaaatgaacctagaaaatgtgttatattgtctgactacatcaagtccatataaatcttaccagccttggggccatgaggtatgacagagtaatcgacttctcaggcggcgggacatccgccttggtgctccccatgatgagaagacagtccccagaagtcacacccttcaccttacccctcagccatccagacgctccagtggctgacgccatgatagtaagctacaccctgcgatcaaacgaaaggatagaaccagcttagccaaagccaaatttagtatgcctgggctaacctatcgtaccaacccacaaattttctcctatctgaaaatgaattacgatagataccccccaccctaaacaagaagcagctaactatcatcaatcagatattcattcaggaggaacgtaagtggtcagcacgtatcacgctcttatcctacactggtatggctagaaacgagcatgtttctctaaaaggaaacttggggaaaattgcacccgaaagatttggcccacaccccaccccaaataactgcaagattccaaccactccaggggtcaaaagctcaaaccccggccacctttctgcagcgatggcccccagtgcacggcagagtaaaccacccgcaatgcgcaagcacgtacagatgcaaatctcacggatacgccacgaagaagaagaaaaaaaaagctgcaacggtagcagcacgcgcagatctgacgcctagcccatccagaaacccacgcgatctcgtgaaattcccggcgtccggaaccagaccccccgagcaaaacggcggagcagagtagagccgccgccgccgccgcccgcccgaatcgacacccgcgacccacagatcgggcggcggcgggaccccagaccgccagatctgagccccggcacacccaacaacgcacgagatggagacggaggcatcggatcaggggggagcggctcacctcacctcagctcagctcggcgcgatcgcctcgagagagagggcggggagcggggtgtagacggctagatccgtccggcggcgacggcggcggcggtgccctctccacgagcccacgatcccgtcgccggcgacgcagcggcgcggcgaggcgaggggagagagcgcgtgagaggtttttggggtgtagcgatgcgcggaacggaggagaggggtagggaggaggcttggttttatattgggcactcctccctcccacacactgcgttaattaccc
More
|
||||||||||
| CDS seq | atggcgtcagccactggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctcatcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatacctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaaactctgcataggaaaggaggtcacattcagagtggactacacagctccaaatgttggacgagaatttggtactgtttacctcggtgacaagaatgttgcctactcgataattgctgcaggatgggcaagggtaaaggagcaaggcccaaagggcggtgaaccgagtccatatcttactgagctgctaaggttggaggaagttgctaagcagcagggtttaggtcgttggagcaaggaacctggtgctgctgaagaatcaataagagatcttccaccatcagcaattggtgaagctagtggttttgatgcaaagggttttgcagttgcgaataaaggcaagagtctggaagccattgttgaacaagttcgtgatggcagtacagttcgtgtttacttgctcccaagtttccaatttgttcagatatatgttgctggagttcagtctccatccatggggaggcgcccaccgaatcctacagtggtggctgcagcagagagtactgctgatggcgctacaaacggtggagattctgaggaagctccagcaccactgactacagcccaaaggcttgccgcagcagcggtttctactgaaattccaccggacaggtttggaatagaagctaagcacttcacagagacacgggttctcaatagagatgtgcgaattgtggtggaaggcacagatagtttcagcaatataattggctcagtgtattactctgatggggatacattgaaggatctggcccttgagcttgttgaaaatggtcttgccaagtatgttgagtggagtgccaacatgatggacgttgatgcaaaaataaagctgaagaatgctgagcttcaggctaagaaggaccagttgagaatttggacaggatttaagccaccagtgacaaactcgaagccaatccacgaccagaaattcactggaaaagttgtagaggttgtgagtggggattgcatcattgttgctgatgacgcagctccttacggaagtccttctgcagaacgccgggttaatctttcaagcattagagctcctaaaatgggcaaccctcgtagagatgagaagcctgataattttgctcgtgaagccaaggaattcttgcgcacaaggttgattggcaagcaagtgactgttgagatggaatactctagaaggatcagcactgtggatggacagcccacaacaaacacagctgatgccagggttttggattatgggtcggtttttcttggttcaccttcgcaggctgatggtgatgatgtttcttccattccaagctcaggcaaccaacctggtatcaatattgctgagactctgctctcaaggggctttgctagaacatctaaacatcgggactacgaagaaaggtcacactattttgacctgctgttggcggctgaatcacgagctgagaaagcaaagaaaggagttcattctgcaaaagaatcacctgtcatgcacataacagacttgacaacggtttcagcaaagaaggccagagacttccttcctttcttacagcggaacagaagacattccgcaattgttgaatatgtcttcagtggccaccgtttcaaactaacaattcctaaggagacttgcagcattgccttctctttctctggtgttagatgccctggtaaagatgagccctactcgaacgaagctattgctttgatgaggaggagaattctacagcgagatgtggagatagaggttgaagcagttgatagaactgggacattcttaggttccttatgggagtccaaaaccaacatggcttctgttcttctggaggctggtctggccaagcttagttcatttggcttggataggattccggatgcaaatgttctaatgagggctgaacagtctgcaaagcagcagaaactcaagatctgggagaattatgtagagggtgaagaagtttccaatggatctgcatctgaatccaaacaaaaggaaattctcaaggttgttgtaactgaagtccttggtggtggaaagttctatgtccaaacagttggtgaccaaagagtggcttccattcaacaacagcttgcatctttaaaacttaaagatgcacctgttattggtgcttttaatcctgtgaagggggaaatagttcttgctcagtttagtgctgacaactcctggaatagagcaatgattgtgaatggacctcgaggagctgtatcatctcaagacgacaagtttgaagtattctacattgactatggcaaccaagaagtcgttccttacagtcgcatacggcctgctgacccatcaatttcctcttcgcctgctcttgctcagttgtgcagccttgccttcataaaagtgcccaacctagaagatgattttggccatgaagcagcagtctatctgaatgattgcttgctcaacagccaaaaacaatacagggcaatgattgaagagcgtgatacttctggtggaaagtccaagggacaaggcactggaactattctgattgttacactggttgacgcagagacagaaaccagcatcaatgctaccatgcttgaggaagggcttgctcggcttgaaagaagcaagagatgggatactagggagagaaaggctgctctccagaatctggaacagttccaggagaaagcaaagaaggaaaggctgcagatctggcagtatggtgatgttgaatctgacgaggaagagcaagctccagcggctaggagaactggagggcgtcggtag
More
|
||||||||||
| Protein seq | MASATGASGWLRGKVKGVTSGDCLLIMGSTKADVPPPEKSITLSYLMAPRLARRGGVDEPFAWESREFLRKLCIGKEVTFRVDYTAPNVGREFGTVYLGDKNVAYSIIAAGWARVKEQGPKGGEPSPYLTELLRLEEVAKQQGLGRWSKEPGAAEESIRDLPPSAIGEASGFDAKGFAVANKGKSLEAIVEQVRDGSTVRVYLLPSFQFVQIYVAGVQSPSMGRRPPNPTVVAAAESTADGATNGGDSEEAPAPLTTAQRLAAAAVSTEIPPDRFGIEAKHFTETRVLNRDVRIVVEGTDSFSNIIGSVYYSDGDTLKDLALELVENGLAKYVEWSANMMDVDAKIKLKNAELQAKKDQLRIWTGFKPPVTNSKPIHDQKFTGKVVEVVSGDCIIVADDAAPYGSPSAERRVNLSSIRAPKMGNPRRDEKPDNFAREAKEFLRTRLIGKQVTVEMEYSRRISTVDGQPTTNTADARVLDYGSVFLGSPSQADGDDVSSIPSSGNQPGINIAETLLSRGFARTSKHRDYEERSHYFDLLLAAESRAEKAKKGVHSAKESPVMHITDLTTVSAKKARDFLPFLQRNRRHSAIVEYVFSGHRFKLTIPKETCSIAFSFSGVRCPGKDEPYSNEAIALMRRRILQRDVEIEVEAVDRTGTFLGSLWESKTNMASVLLEAGLAKLSSFGLDRIPDANVLMRAEQSAKQQKLKIWENYVEGEEVSNGSASESKQKEILKVVVTEVLGGGKFYVQTVGDQRVASIQQQLASLKLKDAPVIGAFNPVKGEIVLAQFSADNSWNRAMIVNGPRGAVSSQDDKFEVFYIDYGNQEVVPYSRIRPADPSISSSPALAQLCSLAFIKVPNLEDDFGHEAAVYLNDCLLNSQKQYRAMIEERDTSGGKSKGQGTGTILIVTLVDAETETSINATMLEEGLARLERSKRWDTRERKAALQNLEQFQEKAKKERLQIWQYGDVESDEEEQAPAARRTGGRR |
||||||||||
| Function | Ribonuclease TUDOR 1 [UniProtKB/Swiss-Prot:Q8VZG7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0019250 | OsLiXu_02g0019250.01 | Chr02 | 20291735 | 20298395 | - | NAM | ||
| CDS seq | atggcgtcagccactggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctcatcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatacctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaaactctgcataggaaaggaggtcacattcagagtggactacacagctccaaatgttggacgagaatttggtactgtttacctcggtgacaagaatgttgcctactcgataattgctgcaggatgggcaagggtaaaggagcaaggcccaaagggcggtgaaccgagtccatatcttactgagctgctaaggttggaggaagttgctaagcagcagggtttaggtcgttggagcaaggaacctggtgctgctgaagaatcaataagagatcttccaccatcagcaattggtgaagctagtggttttgatgcaaagggttttgcagttgcgaataaaggcaagagtctggaagccattgttgaacaagttcgtgatggcagtacagttcgtgtttacttgctcccaagtttccaatttgttcagatatatgttgctggagttcagtctccatccatggggaggcgcccaccgaatcctacagtggtggctgcagcagagagtactgctgatggcgctacaaacggtggagattctgaggaagctccagcaccactgactacagcccaaaggcttgccgcagcagcggtttctactgaaattccaccggacaggtttggaatagaagctaagcacttcacagagacacgggttctcaatagagatgtgcgaattgtggtggaaggcacagatagtttcagcaatataattggctcagtgtattactctgatggggatacattgaaggatctggcccttgagcttgttgaaaatggtcttgccaagtatgttgagtggagtgccaacatgatggacgttgatgcaaaaataaagctgaagaatgctgagcttcaggctaagaaggaccagttgagaatttggacaggatttaagccaccagtgacaaactcgaagccaatccacgaccagaaattcactggaaaagttgtagaggttgtgagtggggattgcatcattgttgctgatgacgcagctccttacggaagtccttctgcagaacgccgggttaatctttcaagcattagagctcctaaaatgggcaaccctcgtagagatgagaagcctgataattttgctcgtgaagccaaggaattcttgcgcacaaggttgattggcaagcaagtgactgttgagatggaatactctagaaggatcagcactgtggatggacagcccacaacaaacacagctgatgccagggttttggattatgggtcggtttttcttggttcaccttcgcaggctgatggtgatgatgtttcttccattccaagctcaggcaaccaacctggtatcaatattgctgagactctgctctcaaggggctttgctagaacatctaaacatcgggactacgaagaaaggtcacactattttgacctgctgttggcggctgaatcacgagctgagaaagcaaagaaaggagttcattctgcaaaagaatcacctgtcatgcacataacagacttgacaacggtttcagcaaagaaggccagagacttccttcctttcttacagcggaacagaagacattccgcaattgttgaatatgtcttcagtggccaccgtttcaaactaacaattcctaaggagacttgcagcattgccttctctttctctggtgttagatgccctggtaaagatgagccctactcgaacgaagctattgctttgatgaggaggagaattctacagcgagatgtggagatagaggttgaagcagttgatagaactgggacattcttaggttccttatgggagtccaaaaccaacatggcttctgttcttctggaggctggtctggccaagcttagttcatttggcttggataggattccggatgcaaatgttctaatgagggctgaacagtctgcaaagcagcagaaactcaagatctgggagaattatgtagagggtgaagaagtttccaatggatctgcatctgaatccaaacaaaaggaaattctcaaggttgttgtaactgaagtccttggtggtggaaagttctatgtccaaacagttggtgaccaaagagtggcttccattcaacaacagcttgcatctttaaaacttaaagatgcacctgttattggtgcttttaatcctgtgaagggggaaatagttcttgctcagtttagtgctgacaactcctggaatagagcaatgattgtgaatggacctcgaggagctgtatcatctcaagacgacaagtttgaagtattctacattgactatggcaaccaagaagtcgttccttacagtcgcatacggcctgctgacccatcaatttcctcttcgcctgctcttgctcagttgtgcagccttgccttcataaaagtgcccaacctagaagatgattttggccatgaagcagcagtctatctgaatgattgcttgctcaacagccaaaaacaatacagggcaatgattgaagagcgtgatacttctggtggaaagtccaagggacaaggcactggaactattctgattgttacactggttgacgcagagacagaaaccagcatcaatgctaccatgcttgaggaagggcttgctcggcttgaaagaagcaagagatgggatactagggagagaaaggctgctctccagaatctggaacagttccaggagaaagcaaagaaggaaaggctgcagatctggcagtatggtgatgttgaatctgacgaggaagagcaagctccagcggctaggagaactggagggcgtcggtag
More
|
|||||||
| Protein seq | MASATGASGWLRGKVKGVTSGDCLLIMGSTKADVPPPEKSITLSYLMAPRLARRGGVDEPFAWESREFLRKLCIGKEVTFRVDYTAPNVGREFGTVYLGDKNVAYSIIAAGWARVKEQGPKGGEPSPYLTELLRLEEVAKQQGLGRWSKEPGAAEESIRDLPPSAIGEASGFDAKGFAVANKGKSLEAIVEQVRDGSTVRVYLLPSFQFVQIYVAGVQSPSMGRRPPNPTVVAAAESTADGATNGGDSEEAPAPLTTAQRLAAAAVSTEIPPDRFGIEAKHFTETRVLNRDVRIVVEGTDSFSNIIGSVYYSDGDTLKDLALELVENGLAKYVEWSANMMDVDAKIKLKNAELQAKKDQLRIWTGFKPPVTNSKPIHDQKFTGKVVEVVSGDCIIVADDAAPYGSPSAERRVNLSSIRAPKMGNPRRDEKPDNFAREAKEFLRTRLIGKQVTVEMEYSRRISTVDGQPTTNTADARVLDYGSVFLGSPSQADGDDVSSIPSSGNQPGINIAETLLSRGFARTSKHRDYEERSHYFDLLLAAESRAEKAKKGVHSAKESPVMHITDLTTVSAKKARDFLPFLQRNRRHSAIVEYVFSGHRFKLTIPKETCSIAFSFSGVRCPGKDEPYSNEAIALMRRRILQRDVEIEVEAVDRTGTFLGSLWESKTNMASVLLEAGLAKLSSFGLDRIPDANVLMRAEQSAKQQKLKIWENYVEGEEVSNGSASESKQKEILKVVVTEVLGGGKFYVQTVGDQRVASIQQQLASLKLKDAPVIGAFNPVKGEIVLAQFSADNSWNRAMIVNGPRGAVSSQDDKFEVFYIDYGNQEVVPYSRIRPADPSISSSPALAQLCSLAFIKVPNLEDDFGHEAAVYLNDCLLNSQKQYRAMIEERDTSGGKSKGQGTGTILIVTLVDAETETSINATMLEEGLARLERSKRWDTRERKAALQNLEQFQEKAKKERLQIWQYGDVESDEEEQAPAARRTGGRR
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0019250 | OsLiXu_02g0019250.02 | Chr02 | 20291735 | 20298395 | - | NAM | ||
| CDS seq | atggcgtcagccactggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctcatcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatacctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaaactctgcataggaaaggaggtcacattcagagtggactacacagctccaaatgttggacgagaatttggtactgtttacctcggtgacaagaatgttgcctactcgataattgctgcaggatgggcaagggtaaaggagcaaggcccaaagggcggtgaaccgagtccatatcttactgagctgctaaggttggaggaagttgctaagcagcagggtttaggtcgttggagcaaggaacctggtgctgctgaagaatcaataagagatcttccaccatcagcaattggtgaagctagtggttttgatgcaaagggttttgcagttgcgaataaaggcaagagtctggaagccattgttgaacaagttcgtgatggcagtacagttcgtgtttacttgctcccaagtttccaatttgttcagatatatgttgctggagttcagtctccatccatggggaggcgcccaccgaatcctacagtggtggctgcagcagagagtactgctgatggcgctacaaacggtggagattctgaggaagctccagcaccactgactacagcccaaaggcttgccgcagcagcggtttctactgaaattccaccggacaggtttggaatagaagctaagcacttcacagagacacgggttctcaatagagatgtgcgaattgtggtggaaggcacagatagtttcagcaatataattggctcagtgtattactctgatggggatacattgaaggatctggcccttgagcttgttgaaaatggtcttgccaagtatgttgagtggagtgccaacatgatggacgttgatgcaaaaataaagctgaagaatgctgagcttcaggctaagaaggaccagttgagaatttggacaggatttaagccaccagtgacaaactcgaagccaatccacgaccagaaattcactggaaaagttgtagaggttgtgagtggggattgcatcattgttgctgatgacgcagctccttacggaagtccttctgcagaacgccgggttaatctttcaagcattagagctcctaaaatgggcaaccctcgtagagatgagaagcctgataattttgctcgtgaagccaaggaattcttgcgcacaaggttgattggcaagcaagtgactgttgagatggaatactctagaaggatcagcactgtggatggacagcccacaacaaacacagctgatgccagggttttggattatgggtcggtttttcttggttcaccttcgcaggctgatggtgatgatgtttcttccattccaagctcaggcaaccaacctggtatcaatattgctgagactctgctctcaaggggctttgctagaacatctaaacatcgggactacgaagaaaggtcacactattttgacctgctgttggcggctgaatcacgagctgagaaagcaaagaaaggagttcattctgcaaaagaatcacctgtcatgcacataacagacttgacaacggtttcagcaaagaaggccagagacttccttcctttcttacagcggaacagaagacattccgcaattgttgaatatgtcttcagtggccaccgtttcaaactaacaattcctaaggagacttgcagcattgccttctctttctctggtgttagatgccctggtaaagatgagccctactcgaacgaagctattgctttgatgaggaggagaattctacagcgagatgtggagatagaggttgaagcagttgatagaactgggacattcttaggttccttatgggagtccaaaaccaacatggcttctgttcttctggaggctggtctggccaagcttagttcatttggcttggataggattccggatgcaaatgttctaatgagggctgaacagtctgcaaagcagcagaaactcaagatctgggagaattatgtagagggtgaagaagtttccaatggatctgcatctgaatccaaacaaaaggaaattctcaaggttgttgtaactgaagtccttggtggtggaaagttctatgtccaaacagttggtgaccaaagagtggcttccattcaacaacagcttgcatctttaaaacttaaagatgcacctgttattggtgcttttaatcctgtgaagggggaaatagttcttgctcagtttagtgctgacaactcctggaatagagcaatgattgtgaatggacctcgaggagctgtatcatctcaagacgacaagtttgaagtattctacattgactatggcaaccaagaagtcgttccttacagtcgcatacggcctgctgacccatcaatttcctcttcgcctgctcttgctcagttgtgcagccttgccttcataaaagtgcccaacctagaagatgattttggccatgaagcagcagtctatctgaatgattgcttgctcaacagccaaaaacaatacagggcaatgattgaagagcgtgatacttctggtggaaagtccaagggacaaggcactggaactattctgattgttacactggttgacgcagagacagaaaccagcatcaatgctaccatgcttgaggaagggcttgctcggcttgaaagaagcaagagatgggatactagggagagaaaggctgctctccagaatctggaacagttccaggagaaagcaaagaaggaaaggctgcagatctggcagtatggtgatgttgaatctgacgaggaagagcaagctccagcggctaggagaactggagggcgtcggtag
More
|
|||||||
| Protein seq | MASATGASGWLRGKVKGVTSGDCLLIMGSTKADVPPPEKSITLSYLMAPRLARRGGVDEPFAWESREFLRKLCIGKEVTFRVDYTAPNVGREFGTVYLGDKNVAYSIIAAGWARVKEQGPKGGEPSPYLTELLRLEEVAKQQGLGRWSKEPGAAEESIRDLPPSAIGEASGFDAKGFAVANKGKSLEAIVEQVRDGSTVRVYLLPSFQFVQIYVAGVQSPSMGRRPPNPTVVAAAESTADGATNGGDSEEAPAPLTTAQRLAAAAVSTEIPPDRFGIEAKHFTETRVLNRDVRIVVEGTDSFSNIIGSVYYSDGDTLKDLALELVENGLAKYVEWSANMMDVDAKIKLKNAELQAKKDQLRIWTGFKPPVTNSKPIHDQKFTGKVVEVVSGDCIIVADDAAPYGSPSAERRVNLSSIRAPKMGNPRRDEKPDNFAREAKEFLRTRLIGKQVTVEMEYSRRISTVDGQPTTNTADARVLDYGSVFLGSPSQADGDDVSSIPSSGNQPGINIAETLLSRGFARTSKHRDYEERSHYFDLLLAAESRAEKAKKGVHSAKESPVMHITDLTTVSAKKARDFLPFLQRNRRHSAIVEYVFSGHRFKLTIPKETCSIAFSFSGVRCPGKDEPYSNEAIALMRRRILQRDVEIEVEAVDRTGTFLGSLWESKTNMASVLLEAGLAKLSSFGLDRIPDANVLMRAEQSAKQQKLKIWENYVEGEEVSNGSASESKQKEILKVVVTEVLGGGKFYVQTVGDQRVASIQQQLASLKLKDAPVIGAFNPVKGEIVLAQFSADNSWNRAMIVNGPRGAVSSQDDKFEVFYIDYGNQEVVPYSRIRPADPSISSSPALAQLCSLAFIKVPNLEDDFGHEAAVYLNDCLLNSQKQYRAMIEERDTSGGKSKGQGTGTILIVTLVDAETETSINATMLEEGLARLERSKRWDTRERKAALQNLEQFQEKAKKERLQIWQYGDVESDEEEQAPAARRTGGRR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr02 | 20297385 | 20298125 | - | OsLiXu_02g0019250.01 | OsLiXu_02g0019250.02,OsLiXu_02g0019250.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.057185 | 12.620491 | 8.458858 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0523500 | RBH | 13.717936 | 9.504002 | 49.221592 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g32350 | RBH | 6.377776 | 4.192022 | 8.805157 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0523500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0019350 | RBH | 2.425997 | 68.144257 | 36.892414 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0019460 | RBH | 1.077752 | 35.751858 | 15.703512 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0019400 | RBH | 3.735179 | 77.344902 | 50.770157 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0019180 | RBH | 0.656585 | 4.922000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0019140 | RBH | 31.250313 | 197.297241 | 88.274086 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0316800 | RBH | 34.422871 | 90.828495 | 62.0618245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0018860 | RBH | 1.078153 | 10.576692 | 6.810346 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0336500 | RBH | 33.9237365 | 64.1799505 | 58.400566 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0019390 | RBH | 1.044478 | 2.800501 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0019110 | RBH | 3.026532 | 125.498917 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0019530 | RBH | 27.924608 | 136.918411 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0012200 | RBH | 0.0 | 0.0 | 1.011545 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0019040 | RBH | 0.701544 | 85.827805 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G019470 | RBH | 1.737291 | 69.655777 | 21.307722 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0019180 | RBH | 4.451912 | 175.253006 | 44.802242 |
