Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_01g0013020 OGI:01032210 | 16/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr01:10734047-10738659
Gene Symbol CIPK01, OsCIPK01, CIPK1, OsCIPK1, OsSnRK3.3, SnRK3.3
DNA seq

ccccgttcattcctctcccccccccccccctgaacccggccaactccggcgagagagacatagatagcgtgtgagacagtataaagatagagagggagaggtagttttttgttgccggcttgcggatttattgtaggagatcaggtcagtttcgttttcttgccggcgcggcgggcgtttgttgggtgcggcgggcggggaggagctcgtgaatggtgaacggagaggcggaggcggagtgcacgcgggcgtcgctgctggggaggtatgagatcgggcgcacgctcggggagggcaacttcggcaaggtcaagtacgcgcgccacctcgccaccggcgcccacttcgccatcaagatcctcgaccgcaacaagatcctctccctccgcttcgacgaccaggtatttgctccctctaatcccatccgcgcctcaccggaatcgctcgcgctcatcatctgtgttgttttggtttggtttgggatgttcagataaggagggagattgggacgctcaagctgctcaagcaccccaacgtcgtccgcctgcacgaggtaacgtctccactactctccgatcatcaccaccctctggctttttttctgcctctttttctcgattttctttcctggattttgtttcattctggacgagttcatcgtcaggttctcaacttccccacgagtcctgacaattttttttttcacacgagacctgacacttggccggttacctacagtagctgcttacttacaaggcaaagaaacatttcgattctagtagtttagtttaaccaccaggataaggatcaatcctcacaaactctttcttgatctcctcgcctcttttgagaagcaaactaattacgcaatgcaaaagcatcaccaccgcctcacgtcatgccacctcgccgccggcggttcacccctcgccgccgccgccgtagccgccgtcaaacttcgattgatcatcacggacagtccacgccgcgttctccgtgtgattcagcctctcgcgtgtttatacgcaacgaatgaatccatcaccggtcaatctggaacacgaattttcttctgattaaaaattttcagggagcgacaagaatttcgtcagagcttttccttctcctcatacatgacctcacgttctctctctctctctcccccccccccccccccccgaaaaatcagcaccgtgtcgaatgaaaggcgcctgatacgtccacgtcacccggattccgcgaaccgacggctccgatggaatcccccccgtatcctcacaggagcgaggggccccaccctggcgtttactcacattccttgcctgcctcttggtctacccgtcgaggcatgtggtggtgggcccggtaggccggcccctcggccctgctggagctgggcccacggtgtcagcgtcacgggctgtctctgtccgggtgcttttagcccagagtgcaacgtccccgtaagcccgggcgcgccgcaccaccaccacccaagtcacccaccgtgtgggcccagcagacttggcaacgcgcggggcccgcacacgtgtgtccggtgacggggcccaccgtgccatccttccctgtgggcccacaagaacagttagaggaggtcagggtgggggggggggggagggacgcatgatgaatggagatgatgggggagatgaacagtgtggtgatagaaatttgagaggagcaagcaatcaaagcatcgaactgctctcacctaacgatggcagttcttgtcatatggttgcattaccagaacggcgatgctcgtacccataatgtgacatctaagtacacaaaaacagtacataatctgatttgttggtgataacaattatggtaataatgctttttcttgagtcatatgatgcaagcagcaaggactgagaattggcaaaagtagaggttgtcatggtgcacagatatctgttgttgtcgtagtaaacgagtggtgttagcaagggaacaaaaaagacgttttgtcgttgctctttagttgaacatgcagttcttcagggaggtccatttgggtttcttgagaacagttctgatctgcgtaatttgcccagatgaagaaccagtgagtgatcatggaattgatatattgtttttcttttttcaggtggctgctagcaaaactaagatttacatggtgcttgaatatgtcaatggaggcgagctctttgacaagattgtaagatatgcaagccttgttggtgctgttgctttttcgtgtaaaaattgctcgtatcttgttaatactgatattttttttccattgctaatttttgaaggccgtaaaaggaaaactctctgaacatgaaggaaggagacttttccagcagttaatcgatgctgtgagctattgccatgataaaggtgtctaccacagagaccttaaggtacccgacataaatattttcagctttttacatgatggatgcctgagttacattctaatacgcaattgtaatcagatttattttcttgctcatactcatcgcaatcaaactaaactagagaattatatgattctcctgtgacagaattttcttctttattctactcttacagcccgaaaatgttcttgtggatcgaagaggcaatatcaagatctctgactttggcctaagtgctttgcctcaacatcttggggtatgataatgatttgattgaattttgttctatataaatcacctgttgtgcaatttgctgaatcatttgcactcccactttcagaatgatggattgctgcacacaacatgtggcagccccaattatattgctcctgaggtaataactgataactgaaaataatctgaaactagtaacatctttcatttctcctgcagatgctaattctgtagcgaatccatgcaggttttgcagaaccgaggttacgatggctcattgtcagatatctggtcttgtggagtaattctctatgtaatgctcgtcggataccttccctttgatgaccgaaatcttgttgtcctgtaccagaaggttggttgcaagataaagcatctttacaactttgctcacaaatttcaaatttcagactgtcctgatagtgcgaaattgtcatgtatctttagattttcaagggggacactcaaatcccaaagtggctttcacctagtgcacgggatcttcttcgaaggattcttgaaccgaacccgatgaagaggatcaacatagcagggatcaaagagcatgagtggtttcagaaggattacactcctgttgttccatatgacgacgatgatgacaattatcttgactcagttcttccaatcaaagaggtattcgtagttttctgaaaaactgtagaaattattaggaaactaacgagtacttgtttctcagtatttgttgatgctgaatttctgattggtaatttctgtttcttgaagcaaattgatgaagcaaagcaggaaaagcctactcatatcaatgcttttcagttgattggaatggcttctgcccttgatctttcaggtttctttgaggaagaggttcgtatgatgttttctcattctagacttctttcatacttttcagttatttatcagaacaagactatgtgtagtgtaacttacaatcttacaacaattttccgaatgaacctatcctaagctgcctggtgctaattgatggattattgcaggatgcgtctcaaagaaagataaggttcacatcaacacattcaccaaaagatttattcgacaagattgagaatgttgtgacggagatgggattccaagtccagaggggtaatagcaaggtagatataccaaggcctttttctcatcacatcatcgtattgtcagggaagaaacaacagctccagtaaaccaaaagcctaaaatcatgtttctctttgcagctaaaggtcatgaaaaatggcaggggttcaaagaacctcaggaatccatcatcattcttggtctgtactgaggtaaaatgccacagcacactcctttcttgtgcaatgtacattcaggaaggattgcatatcagctggtacttacatcatcactcttgatcttcaggtagtcgagctcgggccatccttatatgttgtcgaattgaagaaatcccatggagatcctatattgtatagacaggtaccataccaatgaacagccttactttctatcaccggcaacttcagtattctatctttcagtgattcagtgatatgtgtggtatcgcatcatctcagtagtttgtttcctgaaataattctgcagctatgtgagaggctatcagatgagctaggagtgtgcaagacagagcagattcagaggacggagtcgctggaggatgatctagagagcttcgacagcggatcttctctgcctggtttttgaagaattgccgccctggatcattttggttagagttagaggaacatgctctgttcttcatacaagcgtaggttaggatgttgtatagtgtacaaagtgagtggtgcaagttagccaccgatgtttaatataaggattgctctcttcttgcccgtctgttggcccaattctttcccataatgaaatgaaatcatcagaaatggacgcttgcaaaaatcaggaaaa

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CDS seq

atggtgaacggagaggcggaggcggagtgcacgcgggcgtcgctgctggggaggtatgagatcgggcgcacgctcggggagggcaacttcggcaaggtcaagtacgcgcgccacctcgccaccggcgcccacttcgccatcaagatcctcgaccgcaacaagatcctctccctccgcttcgacgaccagataaggagggagattgggacgctcaagctgctcaagcaccccaacgtcgtccgcctgcacgaggtggctgctagcaaaactaagatttacatggtgcttgaatatgtcaatggaggcgagctctttgacaagattgccgtaaaaggaaaactctctgaacatgaaggaaggagacttttccagcagttaatcgatgctgtgagctattgccatgataaaggtgtctaccacagagaccttaagcccgaaaatgttcttgtggatcgaagaggcaatatcaagatctctgactttggcctaagtgctttgcctcaacatcttgggaatgatggattgctgcacacaacatgtggcagccccaattatattgctcctgaggttttgcagaaccgaggttacgatggctcattgtcagatatctggtcttgtggagtaattctctatgtaatgctcgtcggataccttccctttgatgaccgaaatcttgttgtcctgtaccagaagattttcaagggggacactcaaatcccaaagtggctttcacctagtgcacgggatcttcttcgaaggattcttgaaccgaacccgatgaagaggatcaacatagcagggatcaaagagcatgagtggtttcagaaggattacactcctgttgttccatatgacgacgatgatgacaattatcttgactcagttcttccaatcaaagagcaaattgatgaagcaaagcaggaaaagcctactcatatcaatgcttttcagttgattggaatggcttctgcccttgatctttcaggtttctttgaggaagaggatgcgtctcaaagaaagataaggttcacatcaacacattcaccaaaagatttattcgacaagattgagaatgttgtgacggagatgggattccaagtccagaggggtaatagcaagctaaaggtcatgaaaaatggcaggggttcaaagaacctcaggaatccatcatcattcttggtctgtactgaggtagtcgagctcgggccatccttatatgttgtcgaattgaagaaatcccatggagatcctatattgtatagacagctatgtgagaggctatcagatgagctaggagtgtgcaagacagagcagattcagaggacggagtcgctggaggatgatctagagagcttcgacagcggatcttctctgcctggtttttga

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Protein seq

MVNGEAEAECTRASLLGRYEIGRTLGEGNFGKVKYARHLATGAHFAIKILDRNKILSLRFDDQIRREIGTLKLLKHPNVVRLHEVAASKTKIYMVLEYVNGGELFDKIAVKGKLSEHEGRRLFQQLIDAVSYCHDKGVYHRDLKPENVLVDRRGNIKISDFGLSALPQHLGNDGLLHTTCGSPNYIAPEVLQNRGYDGSLSDIWSCGVILYVMLVGYLPFDDRNLVVLYQKIFKGDTQIPKWLSPSARDLLRRILEPNPMKRINIAGIKEHEWFQKDYTPVVPYDDDDDNYLDSVLPIKEQIDEAKQEKPTHINAFQLIGMASALDLSGFFEEEDASQRKIRFTSTHSPKDLFDKIENVVTEMGFQVQRGNSKLKVMKNGRGSKNLRNPSSFLVCTEVVELGPSLYVVELKKSHGDPILYRQLCERLSDELGVCKTEQIQRTESLEDDLESFDSGSSLPGF

Function CBL-interacting protein kinase 1 [UniProtKB/Swiss-Prot:Q9LGV5]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_01g0013020 OsKeNa_01g0013020.03 Chr01 10734047 10738659 + NAM
CDS seq

atggtgaacggagaggcggaggcggagtgcacgcgggcgtcgctgctggggaggtatgagatcgggcgcacgctcggggagggcaacttcggcaaggtcaagtacgcgcgccacctcgccaccggcgcccacttcgccatcaagatcctcgaccgcaacaagatcctctccctccgcttcgacgaccagataaggagggagattgggacgctcaagctgctcaagcaccccaacgtcgtccgcctgcacgaggtggctgctagcaaaactaagatttacatggtgcttgaatatgtcaatggaggcgagctctttgacaagattgccgtaaaaggaaaactctctgaacatgaaggaaggagacttttccagcagttaatcgatgctgtgagctattgccatgataaaggtgtctaccacagagaccttaagcccgaaaatgttcttgtggatcgaagaggcaatatcaagatctctgactttggcctaagtgctttgcctcaacatcttgggaatgatggattgctgcacacaacatgtggcagccccaattatattgctcctgaggttttgcagaaccgaggttacgatggctcattgtcagatatctggtcttgtggagtaattctctatgtaatgctcgtcggataccttccctttgatgaccgaaatcttgttgtcctgtaccagaagattttcaagggggacactcaaatcccaaagtggctttcacctagtgcacgggatcttcttcgaaggattcttgaaccgaacccgatgaagaggatcaacatagcagggatcaaagagcatgagtggtttcagaaggattacactcctgttgttccatatgacgacgatgatgacaattatcttgactcagttcttccaatcaaagagcaaattgatgaagcaaagcaggaaaagcctactcatatcaatgcttttcagttgattggaatggcttctgcccttgatctttcaggtttctttgaggaagaggatgcgtctcaaagaaagataaggttcacatcaacacattcaccaaaagatttattcgacaagattgagaatgttgtgacggagatgggattccaagtccagaggggtaatagcaagctaaaggtcatgaaaaatggcaggggttcaaagaacctcaggaatccatcatcattcttggtctgtactgaggtagtcgagctcgggccatccttatatgttgtcgaattgaagaaatcccatggagatcctatattgtatagacaggtaccataccaatga

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Protein seq

MVNGEAEAECTRASLLGRYEIGRTLGEGNFGKVKYARHLATGAHFAIKILDRNKILSLRFDDQIRREIGTLKLLKHPNVVRLHEVAASKTKIYMVLEYVNGGELFDKIAVKGKLSEHEGRRLFQQLIDAVSYCHDKGVYHRDLKPENVLVDRRGNIKISDFGLSALPQHLGNDGLLHTTCGSPNYIAPEVLQNRGYDGSLSDIWSCGVILYVMLVGYLPFDDRNLVVLYQKIFKGDTQIPKWLSPSARDLLRRILEPNPMKRINIAGIKEHEWFQKDYTPVVPYDDDDDNYLDSVLPIKEQIDEAKQEKPTHINAFQLIGMASALDLSGFFEEEDASQRKIRFTSTHSPKDLFDKIENVVTEMGFQVQRGNSKLKVMKNGRGSKNLRNPSSFLVCTEVVELGPSLYVVELKKSHGDPILYRQVPYQ

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_01g0013020 OsKeNa_01g0013020.02 Chr01 10734047 10738659 + NAM
CDS seq

atggtgaacggagaggcggaggcggagtgcacgcgggcgtcgctgctggggaggtatgagatcgggcgcacgctcggggagggcaacttcggcaaggtcaagtacgcgcgccacctcgccaccggcgcccacttcgccatcaagatcctcgaccgcaacaagatcctctccctccgcttcgacgaccagataaggagggagattgggacgctcaagctgctcaagcaccccaacgtcgtccgcctgcacgaggtggctgctagcaaaactaagatttacatggtgcttgaatatgtcaatggaggcgagctctttgacaagattgccgtaaaaggaaaactctctgaacatgaaggaaggagacttttccagcagttaatcgatgctgtgagctattgccatgataaaggtgtctaccacagagaccttaagcccgaaaatgttcttgtggatcgaagaggcaatatcaagatctctgactttggcctaagtgctttgcctcaacatcttgggaatgatggattgctgcacacaacatgtggcagccccaattatattgctcctgaggttttgcagaaccgaggttacgatggctcattgtcagatatctggtcttgtggagtaattctctatgtaatgctcgtcggataccttccctttgatgaccgaaatcttgttgtcctgtaccagaagattttcaagggggacactcaaatcccaaagtggctttcacctagtgcacgggatcttcttcgaaggattcttgaaccgaacccgatgaagaggatcaacatagcagggatcaaagagcatgagtggtttcagaaggattacactcctgttgttccatatgacgacgatgatgacaattatcttgactcagttcttccaatcaaagagcaaattgatgaagcaaagcaggaaaagcctactcatatcaatgcttttcagttgattggaatggcttctgcccttgatctttcaggtttctttgaggaagaggatgcgtctcaaagaaagataaggttcacatcaacacattcaccaaaagatttattcgacaagattgagaatgttgtgacggagatgggattccaagtccagaggggtaatagcaagctaaaggtcatgaaaaatggcaggggttcaaagaacctcaggaatccatcatcattcttggtctgtactgaggtagtcgagctcgggccatccttatatgttgtcgaattgaagaaatcccatggagatcctatattgtatagacagctatgtgagaggctatcagatgagctaggagtgtgcaagacagagcagattcagaggacggagtcgctggaggatgatctagagagcttcgacagcggatcttctctgcctggtttttga

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Protein seq

MVNGEAEAECTRASLLGRYEIGRTLGEGNFGKVKYARHLATGAHFAIKILDRNKILSLRFDDQIRREIGTLKLLKHPNVVRLHEVAASKTKIYMVLEYVNGGELFDKIAVKGKLSEHEGRRLFQQLIDAVSYCHDKGVYHRDLKPENVLVDRRGNIKISDFGLSALPQHLGNDGLLHTTCGSPNYIAPEVLQNRGYDGSLSDIWSCGVILYVMLVGYLPFDDRNLVVLYQKIFKGDTQIPKWLSPSARDLLRRILEPNPMKRINIAGIKEHEWFQKDYTPVVPYDDDDDNYLDSVLPIKEQIDEAKQEKPTHINAFQLIGMASALDLSGFFEEEDASQRKIRFTSTHSPKDLFDKIENVVTEMGFQVQRGNSKLKVMKNGRGSKNLRNPSSFLVCTEVVELGPSLYVVELKKSHGDPILYRQLCERLSDELGVCKTEQIQRTESLEDDLESFDSGSSLPGF

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_01g0013020 OsKeNa_01g0013020.01 Chr01 10734047 10738659 + NAM
CDS seq

atggtgcttgaatatgtcaatggaggcgagctctttgacaagattgccgtaaaaggaaaactctctgaacatgaaggaaggagacttttccagcagttaatcgatgctgtgagctattgccatgataaaggtgtctaccacagagaccttaagcccgaaaatgttcttgtggatcgaagaggcaatatcaagatctctgactttggcctaagtgctttgcctcaacatcttgggaatgatggattgctgcacacaacatgtggcagccccaattatattgctcctgaggttttgcagaaccgaggttacgatggctcattgtcagatatctggtcttgtggagtaattctctatgtaatgctcgtcggataccttccctttgatgaccgaaatcttgttgtcctgtaccagaagattttcaagggggacactcaaatcccaaagtggctttcacctagtgcacgggatcttcttcgaaggattcttgaaccgaacccgatgaagaggatcaacatagcagggatcaaagagcatgagtggtttcagaaggattacactcctgttgttccatatgacgacgatgatgacaattatcttgactcagttcttccaatcaaagagcaaattgatgaagcaaagcaggaaaagcctactcatatcaatgcttttcagttgattggaatggcttctgcccttgatctttcaggtttctttgaggaagaggatgcgtctcaaagaaagataaggttcacatcaacacattcaccaaaagatttattcgacaagattgagaatgttgtgacggagatgggattccaagtccagaggggtaatagcaagctaaaggtcatgaaaaatggcaggggttcaaagaacctcaggaatccatcatcattcttggtctgtactgaggtagtcgagctcgggccatccttatatgttgtcgaattgaagaaatcccatggagatcctatattgtatagacagctatgtgagaggctatcagatgagctaggagtgtgcaagacagagcagattcagaggacggagtcgctggaggatgatctagagagcttcgacagcggatcttctctgcctggtttttga

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Protein seq

MVLEYVNGGELFDKIAVKGKLSEHEGRRLFQQLIDAVSYCHDKGVYHRDLKPENVLVDRRGNIKISDFGLSALPQHLGNDGLLHTTCGSPNYIAPEVLQNRGYDGSLSDIWSCGVILYVMLVGYLPFDDRNLVVLYQKIFKGDTQIPKWLSPSARDLLRRILEPNPMKRINIAGIKEHEWFQKDYTPVVPYDDDDDNYLDSVLPIKEQIDEAKQEKPTHINAFQLIGMASALDLSGFFEEEDASQRKIRFTSTHSPKDLFDKIENVVTEMGFQVQRGNSKLKVMKNGRGSKNLRNPSSFLVCTEVVELGPSLYVVELKKSHGDPILYRQLCERLSDELGVCKTEQIQRTESLEDDLESFDSGSSLPGF

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_01g0013020 OsKeNa_01g0013020.04 Chr01 10737211 10738586 + IsoSeq
CDS seq

atggcttctgcccttgatctttcaggtttctttgaggaagaggttcgtatgatgttttctcattctagacttctttcatacttttcagttatttatcagaacaagactatgtgtagtgtaacttacaatcttacaacaattttccgaatgaaccta

Protein seq

MASALDLSGFFEEEVRMMFSHSRLLSYFSVIYQNKTMCSVTYNLTTIFRMNL

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr01 10734047 10734599 + OsKeNa_01g0013020.01 OsKeNa_01g0013020.02,OsKeNa_01g0013020.03,OsKeNa_01g0013020.01 All
RI Chr01 10738117 10738659 + OsKeNa_01g0013020.03 OsKeNa_01g0013020.02,OsKeNa_01g0013020.03,OsKeNa_01g0013020.01 All

Expression

Leaf Root Panicle
FPKM 10.214009 11.110823 14.043918

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0292200 RBH 29.674225 31.816095 36.166748
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g18800 RBH 14.396140 15.800244 6.357312
Nipponbare | IRGSP 1.0 | RAP-db Os01g0292200 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0013290 RBH 8.720076 49.452099 9.582980
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_05g0002640 RBH 0.176634 1.399652 1.259706
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0013310 RBH 22.940899 49.713387 38.933228
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0012770 RBH 3.967312 0.906471 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0012880 RBH 225.630356 17.161728 48.015369
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0176600 RBH 106.8952025 41.9772305 43.870604
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0012820 RBH 2.991793 2.373509 9.136690
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0175300 RBH 115.6427765 24.4889655 20.74057
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0012810 RBH 7.367108 0.557754 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0012910 RBH 26.646652 25.617683 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0012870 RBH 261.792084 58.598324 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0012970 RBH 9.312641 2.221314 16.841307
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0012680 RBH 6.108485 19.186014 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G012970 RBH 12.878938 3.650191 13.298151
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0012740 RBH 15.887058 39.756172 56.958439
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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