Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_01g0013020 OGI:01032210 | 16/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr01:10734047-10738659
Gene Symbol CIPK01, OsCIPK01, CIPK1, OsCIPK1, OsSnRK3.3, SnRK3.3
DNA seq

ccccgttcattcctctcccccccccccccctgaacccggccaactccggcgagagagacatagatagcgtgtgagacagtataaagatagagagggagaggtagttttttgttgccggcttgcggatttattgtaggagatcaggtcagtttcgttttcttgccggcgcggcgggcgtttgttgggtgcggcgggcggggaggagctcgtgaatggtgaacggagaggcggaggcggagtgcacgcgggcgtcgctgctggggaggtatgagatcgggcgcacgctcggggagggcaacttcggcaaggtcaagtacgcgcgccacctcgccaccggcgcccacttcgccatcaagatcctcgaccgcaacaagatcctctccctccgcttcgacgaccaggtatttgctccctctaatcccatccgcgcctcaccggaatcgctcgcgctcatcatctgtgttgttttggtttggtttgggatgttcagataaggagggagattgggacgctcaagctgctcaagcaccccaacgtcgtccgcctgcacgaggtaacgtctccactactctccgatcatcaccaccctctggctttttttctgcctctttttctcgattttctttcctggattttgtttcattctggacgagttcatcgtcaggttctcaacttccccacgagtcctgacaattttttttttcacacgagacctgacacttggccggttacctacagtagctgcttacttacaaggcaaagaaacatttcgattctagtagtttagtttaaccaccaggataaggatcaatcctcacaaactctttcttgatctcctcgcctcttttgagaagcaaactaattacgcaatgcaaaagcatcaccaccgcctcacgtcatgccacctcgccgccggcggttcacccctcgccgccgccgccgtagccgccgtcaaacttcgattgatcatcacggacagtccacgccgcgttctccgtgtgattcagcctctcgcgtgtttatacgcaacgaatgaatccatcaccggtcaatctggaacacgaattttcttctgattaaaaattttcagggagcgacaagaatttcgtcagagcttttccttctcctcatacatgacctcacgttctctctctctctctcccccccccccccccccccgaaaaatcagcaccgtgtcgaatgaaaggcgcctgatacgtccacgtcacccggattccgcgaaccgacggctccgatggaatcccccccgtatcctcacaggagcgaggggccccaccctggcgtttactcacattccttgcctgcctcttggtctacccgtcgaggcatgtggtggtgggcccggtaggccggcccctcggccctgctggagctgggcccacggtgtcagcgtcacgggctgtctctgtccgggtgcttttagcccagagtgcaacgtccccgtaagcccgggcgcgccgcaccaccaccacccaagtcacccaccgtgtgggcccagcagacttggcaacgcgcggggcccgcacacgtgtgtccggtgacggggcccaccgtgccatccttccctgtgggcccacaagaacagttagaggaggtcagggtgggggggggggggagggacgcatgatgaatggagatgatgggggagatgaacagtgtggtgatagaaatttgagaggagcaagcaatcaaagcatcgaactgctctcacctaacgatggcagttcttgtcatatggttgcattaccagaacggcgatgctcgtacccataatgtgacatctaagtacacaaaaacagtacataatctgatttgttggtgataacaattatggtaataatgctttttcttgagtcatatgatgcaagcagcaaggactgagaattggcaaaagtagaggttgtcatggtgcacagatatctgttgttgtcgtagtaaacgagtggtgttagcaagggaacaaaaaagacgttttgtcgttgctctttagttgaacatgcagttcttcagggaggtccatttgggtttcttgagaacagttctgatctgcgtaatttgcccagatgaagaaccagtgagtgatcatggaattgatatattgtttttcttttttcaggtggctgctagcaaaactaagatttacatggtgcttgaatatgtcaatggaggcgagctctttgacaagattgtaagatatgcaagccttgttggtgctgttgctttttcgtgtaaaaattgctcgtatcttgttaatactgatattttttttccattgctaatttttgaaggccgtaaaaggaaaactctctgaacatgaaggaaggagacttttccagcagttaatcgatgctgtgagctattgccatgataaaggtgtctaccacagagaccttaaggtacccgacataaatattttcagctttttacatgatggatgcctgagttacattctaatacgcaattgtaatcagatttattttcttgctcatactcatcgcaatcaaactaaactagagaattatatgattctcctgtgacagaattttcttctttattctactcttacagcccgaaaatgttcttgtggatcgaagaggcaatatcaagatctctgactttggcctaagtgctttgcctcaacatcttggggtatgataatgatttgattgaattttgttctatataaatcacctgttgtgcaatttgctgaatcatttgcactcccactttcagaatgatggattgctgcacacaacatgtggcagccccaattatattgctcctgaggtaataactgataactgaaaataatctgaaactagtaacatctttcatttctcctgcagatgctaattctgtagcgaatccatgcaggttttgcagaaccgaggttacgatggctcattgtcagatatctggtcttgtggagtaattctctatgtaatgctcgtcggataccttccctttgatgaccgaaatcttgttgtcctgtaccagaaggttggttgcaagataaagcatctttacaactttgctcacaaatttcaaatttcagactgtcctgatagtgcgaaattgtcatgtatctttagattttcaagggggacactcaaatcccaaagtggctttcacctagtgcacgggatcttcttcgaaggattcttgaaccgaacccgatgaagaggatcaacatagcagggatcaaagagcatgagtggtttcagaaggattacactcctgttgttccatatgacgacgatgatgacaattatcttgactcagttcttccaatcaaagaggtattcgtagttttctgaaaaactgtagaaattattaggaaactaacgagtacttgtttctcagtatttgttgatgctgaatttctgattggtaatttctgtttcttgaagcaaattgatgaagcaaagcaggaaaagcctactcatatcaatgcttttcagttgattggaatggcttctgcccttgatctttcaggtttctttgaggaagaggttcgtatgatgttttctcattctagacttctttcatacttttcagttatttatcagaacaagactatgtgtagtgtaacttacaatcttacaacaattttccgaatgaacctatcctaagctgcctggtgctaattgatggattattgcaggatgcgtctcaaagaaagataaggttcacatcaacacattcaccaaaagatttattcgacaagattgagaatgttgtgacggagatgggattccaagtccagaggggtaatagcaaggtagatataccaaggcctttttctcatcacatcatcgtattgtcagggaagaaacaacagctccagtaaaccaaaagcctaaaatcatgtttctctttgcagctaaaggtcatgaaaaatggcaggggttcaaagaacctcaggaatccatcatcattcttggtctgtactgaggtaaaatgccacagcacactcctttcttgtgcaatgtacattcaggaaggattgcatatcagctggtacttacatcatcactcttgatcttcaggtagtcgagctcgggccatccttatatgttgtcgaattgaagaaatcccatggagatcctatattgtatagacaggtaccataccaatgaacagccttactttctatcaccggcaacttcagtattctatctttcagtgattcagtgatatgtgtggtatcgcatcatctcagtagtttgtttcctgaaataattctgcagctatgtgagaggctatcagatgagctaggagtgtgcaagacagagcagattcagaggacggagtcgctggaggatgatctagagagcttcgacagcggatcttctctgcctggtttttgaagaattgccgccctggatcattttggttagagttagaggaacatgctctgttcttcatacaagcgtaggttaggatgttgtatagtgtacaaagtgagtggtgcaagttagccaccgatgtttaatataaggattgctctcttcttgcccgtctgttggcccaattctttcccataatgaaatgaaatcatcagaaatggacgcttgcaaaaatcaggaaaa

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CDS seq

atggtgaacggagaggcggaggcggagtgcacgcgggcgtcgctgctggggaggtatgagatcgggcgcacgctcggggagggcaacttcggcaaggtcaagtacgcgcgccacctcgccaccggcgcccacttcgccatcaagatcctcgaccgcaacaagatcctctccctccgcttcgacgaccagataaggagggagattgggacgctcaagctgctcaagcaccccaacgtcgtccgcctgcacgaggtggctgctagcaaaactaagatttacatggtgcttgaatatgtcaatggaggcgagctctttgacaagattgccgtaaaaggaaaactctctgaacatgaaggaaggagacttttccagcagttaatcgatgctgtgagctattgccatgataaaggtgtctaccacagagaccttaagcccgaaaatgttcttgtggatcgaagaggcaatatcaagatctctgactttggcctaagtgctttgcctcaacatcttgggaatgatggattgctgcacacaacatgtggcagccccaattatattgctcctgaggttttgcagaaccgaggttacgatggctcattgtcagatatctggtcttgtggagtaattctctatgtaatgctcgtcggataccttccctttgatgaccgaaatcttgttgtcctgtaccagaagattttcaagggggacactcaaatcccaaagtggctttcacctagtgcacgggatcttcttcgaaggattcttgaaccgaacccgatgaagaggatcaacatagcagggatcaaagagcatgagtggtttcagaaggattacactcctgttgttccatatgacgacgatgatgacaattatcttgactcagttcttccaatcaaagagcaaattgatgaagcaaagcaggaaaagcctactcatatcaatgcttttcagttgattggaatggcttctgcccttgatctttcaggtttctttgaggaagaggatgcgtctcaaagaaagataaggttcacatcaacacattcaccaaaagatttattcgacaagattgagaatgttgtgacggagatgggattccaagtccagaggggtaatagcaagctaaaggtcatgaaaaatggcaggggttcaaagaacctcaggaatccatcatcattcttggtctgtactgaggtagtcgagctcgggccatccttatatgttgtcgaattgaagaaatcccatggagatcctatattgtatagacagctatgtgagaggctatcagatgagctaggagtgtgcaagacagagcagattcagaggacggagtcgctggaggatgatctagagagcttcgacagcggatcttctctgcctggtttttga

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Protein seq

MVNGEAEAECTRASLLGRYEIGRTLGEGNFGKVKYARHLATGAHFAIKILDRNKILSLRFDDQIRREIGTLKLLKHPNVVRLHEVAASKTKIYMVLEYVNGGELFDKIAVKGKLSEHEGRRLFQQLIDAVSYCHDKGVYHRDLKPENVLVDRRGNIKISDFGLSALPQHLGNDGLLHTTCGSPNYIAPEVLQNRGYDGSLSDIWSCGVILYVMLVGYLPFDDRNLVVLYQKIFKGDTQIPKWLSPSARDLLRRILEPNPMKRINIAGIKEHEWFQKDYTPVVPYDDDDDNYLDSVLPIKEQIDEAKQEKPTHINAFQLIGMASALDLSGFFEEEDASQRKIRFTSTHSPKDLFDKIENVVTEMGFQVQRGNSKLKVMKNGRGSKNLRNPSSFLVCTEVVELGPSLYVVELKKSHGDPILYRQLCERLSDELGVCKTEQIQRTESLEDDLESFDSGSSLPGF

Function CBL-interacting protein kinase 1 [UniProtKB/Swiss-Prot:Q9LGV5]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_01g0013020 OsKeNa_01g0013020.03 Chr01 10734047 10738659 + NAM
CDS seq

atggtgaacggagaggcggaggcggagtgcacgcgggcgtcgctgctggggaggtatgagatcgggcgcacgctcggggagggcaacttcggcaaggtcaagtacgcgcgccacctcgccaccggcgcccacttcgccatcaagatcctcgaccgcaacaagatcctctccctccgcttcgacgaccagataaggagggagattgggacgctcaagctgctcaagcaccccaacgtcgtccgcctgcacgaggtggctgctagcaaaactaagatttacatggtgcttgaatatgtcaatggaggcgagctctttgacaagattgccgtaaaaggaaaactctctgaacatgaaggaaggagacttttccagcagttaatcgatgctgtgagctattgccatgataaaggtgtctaccacagagaccttaagcccgaaaatgttcttgtggatcgaagaggcaatatcaagatctctgactttggcctaagtgctttgcctcaacatcttgggaatgatggattgctgcacacaacatgtggcagccccaattatattgctcctgaggttttgcagaaccgaggttacgatggctcattgtcagatatctggtcttgtggagtaattctctatgtaatgctcgtcggataccttccctttgatgaccgaaatcttgttgtcctgtaccagaagattttcaagggggacactcaaatcccaaagtggctttcacctagtgcacgggatcttcttcgaaggattcttgaaccgaacccgatgaagaggatcaacatagcagggatcaaagagcatgagtggtttcagaaggattacactcctgttgttccatatgacgacgatgatgacaattatcttgactcagttcttccaatcaaagagcaaattgatgaagcaaagcaggaaaagcctactcatatcaatgcttttcagttgattggaatggcttctgcccttgatctttcaggtttctttgaggaagaggatgcgtctcaaagaaagataaggttcacatcaacacattcaccaaaagatttattcgacaagattgagaatgttgtgacggagatgggattccaagtccagaggggtaatagcaagctaaaggtcatgaaaaatggcaggggttcaaagaacctcaggaatccatcatcattcttggtctgtactgaggtagtcgagctcgggccatccttatatgttgtcgaattgaagaaatcccatggagatcctatattgtatagacaggtaccataccaatga

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Protein seq

MVNGEAEAECTRASLLGRYEIGRTLGEGNFGKVKYARHLATGAHFAIKILDRNKILSLRFDDQIRREIGTLKLLKHPNVVRLHEVAASKTKIYMVLEYVNGGELFDKIAVKGKLSEHEGRRLFQQLIDAVSYCHDKGVYHRDLKPENVLVDRRGNIKISDFGLSALPQHLGNDGLLHTTCGSPNYIAPEVLQNRGYDGSLSDIWSCGVILYVMLVGYLPFDDRNLVVLYQKIFKGDTQIPKWLSPSARDLLRRILEPNPMKRINIAGIKEHEWFQKDYTPVVPYDDDDDNYLDSVLPIKEQIDEAKQEKPTHINAFQLIGMASALDLSGFFEEEDASQRKIRFTSTHSPKDLFDKIENVVTEMGFQVQRGNSKLKVMKNGRGSKNLRNPSSFLVCTEVVELGPSLYVVELKKSHGDPILYRQVPYQ

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_01g0013020 OsKeNa_01g0013020.02 Chr01 10734047 10738659 + NAM
CDS seq

atggtgaacggagaggcggaggcggagtgcacgcgggcgtcgctgctggggaggtatgagatcgggcgcacgctcggggagggcaacttcggcaaggtcaagtacgcgcgccacctcgccaccggcgcccacttcgccatcaagatcctcgaccgcaacaagatcctctccctccgcttcgacgaccagataaggagggagattgggacgctcaagctgctcaagcaccccaacgtcgtccgcctgcacgaggtggctgctagcaaaactaagatttacatggtgcttgaatatgtcaatggaggcgagctctttgacaagattgccgtaaaaggaaaactctctgaacatgaaggaaggagacttttccagcagttaatcgatgctgtgagctattgccatgataaaggtgtctaccacagagaccttaagcccgaaaatgttcttgtggatcgaagaggcaatatcaagatctctgactttggcctaagtgctttgcctcaacatcttgggaatgatggattgctgcacacaacatgtggcagccccaattatattgctcctgaggttttgcagaaccgaggttacgatggctcattgtcagatatctggtcttgtggagtaattctctatgtaatgctcgtcggataccttccctttgatgaccgaaatcttgttgtcctgtaccagaagattttcaagggggacactcaaatcccaaagtggctttcacctagtgcacgggatcttcttcgaaggattcttgaaccgaacccgatgaagaggatcaacatagcagggatcaaagagcatgagtggtttcagaaggattacactcctgttgttccatatgacgacgatgatgacaattatcttgactcagttcttccaatcaaagagcaaattgatgaagcaaagcaggaaaagcctactcatatcaatgcttttcagttgattggaatggcttctgcccttgatctttcaggtttctttgaggaagaggatgcgtctcaaagaaagataaggttcacatcaacacattcaccaaaagatttattcgacaagattgagaatgttgtgacggagatgggattccaagtccagaggggtaatagcaagctaaaggtcatgaaaaatggcaggggttcaaagaacctcaggaatccatcatcattcttggtctgtactgaggtagtcgagctcgggccatccttatatgttgtcgaattgaagaaatcccatggagatcctatattgtatagacagctatgtgagaggctatcagatgagctaggagtgtgcaagacagagcagattcagaggacggagtcgctggaggatgatctagagagcttcgacagcggatcttctctgcctggtttttga

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Protein seq

MVNGEAEAECTRASLLGRYEIGRTLGEGNFGKVKYARHLATGAHFAIKILDRNKILSLRFDDQIRREIGTLKLLKHPNVVRLHEVAASKTKIYMVLEYVNGGELFDKIAVKGKLSEHEGRRLFQQLIDAVSYCHDKGVYHRDLKPENVLVDRRGNIKISDFGLSALPQHLGNDGLLHTTCGSPNYIAPEVLQNRGYDGSLSDIWSCGVILYVMLVGYLPFDDRNLVVLYQKIFKGDTQIPKWLSPSARDLLRRILEPNPMKRINIAGIKEHEWFQKDYTPVVPYDDDDDNYLDSVLPIKEQIDEAKQEKPTHINAFQLIGMASALDLSGFFEEEDASQRKIRFTSTHSPKDLFDKIENVVTEMGFQVQRGNSKLKVMKNGRGSKNLRNPSSFLVCTEVVELGPSLYVVELKKSHGDPILYRQLCERLSDELGVCKTEQIQRTESLEDDLESFDSGSSLPGF

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_01g0013020 OsKeNa_01g0013020.01 Chr01 10734047 10738659 + NAM
CDS seq

atggtgcttgaatatgtcaatggaggcgagctctttgacaagattgccgtaaaaggaaaactctctgaacatgaaggaaggagacttttccagcagttaatcgatgctgtgagctattgccatgataaaggtgtctaccacagagaccttaagcccgaaaatgttcttgtggatcgaagaggcaatatcaagatctctgactttggcctaagtgctttgcctcaacatcttgggaatgatggattgctgcacacaacatgtggcagccccaattatattgctcctgaggttttgcagaaccgaggttacgatggctcattgtcagatatctggtcttgtggagtaattctctatgtaatgctcgtcggataccttccctttgatgaccgaaatcttgttgtcctgtaccagaagattttcaagggggacactcaaatcccaaagtggctttcacctagtgcacgggatcttcttcgaaggattcttgaaccgaacccgatgaagaggatcaacatagcagggatcaaagagcatgagtggtttcagaaggattacactcctgttgttccatatgacgacgatgatgacaattatcttgactcagttcttccaatcaaagagcaaattgatgaagcaaagcaggaaaagcctactcatatcaatgcttttcagttgattggaatggcttctgcccttgatctttcaggtttctttgaggaagaggatgcgtctcaaagaaagataaggttcacatcaacacattcaccaaaagatttattcgacaagattgagaatgttgtgacggagatgggattccaagtccagaggggtaatagcaagctaaaggtcatgaaaaatggcaggggttcaaagaacctcaggaatccatcatcattcttggtctgtactgaggtagtcgagctcgggccatccttatatgttgtcgaattgaagaaatcccatggagatcctatattgtatagacagctatgtgagaggctatcagatgagctaggagtgtgcaagacagagcagattcagaggacggagtcgctggaggatgatctagagagcttcgacagcggatcttctctgcctggtttttga

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Protein seq

MVLEYVNGGELFDKIAVKGKLSEHEGRRLFQQLIDAVSYCHDKGVYHRDLKPENVLVDRRGNIKISDFGLSALPQHLGNDGLLHTTCGSPNYIAPEVLQNRGYDGSLSDIWSCGVILYVMLVGYLPFDDRNLVVLYQKIFKGDTQIPKWLSPSARDLLRRILEPNPMKRINIAGIKEHEWFQKDYTPVVPYDDDDDNYLDSVLPIKEQIDEAKQEKPTHINAFQLIGMASALDLSGFFEEEDASQRKIRFTSTHSPKDLFDKIENVVTEMGFQVQRGNSKLKVMKNGRGSKNLRNPSSFLVCTEVVELGPSLYVVELKKSHGDPILYRQLCERLSDELGVCKTEQIQRTESLEDDLESFDSGSSLPGF

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_01g0013020 OsKeNa_01g0013020.04 Chr01 10737211 10738586 + IsoSeq
CDS seq

atggcttctgcccttgatctttcaggtttctttgaggaagaggttcgtatgatgttttctcattctagacttctttcatacttttcagttatttatcagaacaagactatgtgtagtgtaacttacaatcttacaacaattttccgaatgaaccta

Protein seq

MASALDLSGFFEEEVRMMFSHSRLLSYFSVIYQNKTMCSVTYNLTTIFRMNL

OsKeNa_01g0013020.04OsKeNa_01g0013020.03OsKeNa_01g0013020.02OsKeNa_01g0013020.01AS10734000 bp10735000 bp10736000 bp10737000 bp10738000 bp10739000 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr01 10734047 10734599 + OsKeNa_01g0013020.01 OsKeNa_01g0013020.02,OsKeNa_01g0013020.03,OsKeNa_01g0013020.01 All
RI Chr01 10738117 10738659 + OsKeNa_01g0013020.03 OsKeNa_01g0013020.02,OsKeNa_01g0013020.03,OsKeNa_01g0013020.01 All

Expression

Leaf Root Panicle
FPKM 10.214009 11.110823 14.043918

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0292200 RBH 29.674225 31.816095 36.166748
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g18800 RBH 14.396140 15.800244 6.357312
Nipponbare | IRGSP 1.0 | RAP-db Os01g0292200 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0013290 RBH 8.720076 49.452099 9.582980
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_05g0002640 RBH 0.176634 1.399652 1.259706
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0013310 RBH 22.940899 49.713387 38.933228
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0012770 RBH 3.967312 0.906471 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0012880 RBH 225.630356 17.161728 48.015369
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0176600 RBH 106.8952025 41.9772305 43.870604
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0012820 RBH 2.991793 2.373509 9.136690
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0175300 RBH 115.6427765 24.4889655 20.74057
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0012810 RBH 7.367108 0.557754 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0012910 RBH 26.646652 25.617683 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0012870 RBH 261.792084 58.598324 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0012970 RBH 9.312641 2.221314 16.841307
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0012680 RBH 6.108485 19.186014 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G012970 RBH 12.878938 3.650191 13.298151
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0012740 RBH 15.887058 39.756172 56.958439
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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