Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
Os01g0292200 OGI:01032210 | 16/16 Nipponbare | IRGSP 1.0 | RAP-db Chr01:10622951-10627532
Gene Symbol CIPK01, OsCIPK01, CIPK1, OsCIPK1, OsSnRK3.3, SnRK3.3
DNA seq

GTTCATTCCTCTCCCCCCCCCCCCCTGAACCCGGCCAACTCCGGCGAGAGAGACATAGATAGCGTGTGAGACAGTATAAAGATAGAGAGGGAGAGGTAGTTTTTTGTTGCCGGCTTGCGGATTTATTGTAGGAGATCAGGTCAGTTTCGTTTTCTTGCCGGCGCGGCGGGCGTTTGTTGGGTGCGGCGGGCGGGGAGGAGCTCGTGAATGGTGAACGGAGAGGCGGAGGCGGAGTGCACGCGGGCGTCGCTGCTGGGGAGGTATGAGATCGGGCGCACGCTCGGGGAGGGCAACTTCGGCAAGGTCAAGTACGCGCGCCACCTCGCCACCGGCGCCCACTTCGCCATCAAGATCCTCGACCGCAACAAGATCCTCTCCCTCCGCTTCGACGACCAGGTATTTGCTCCCTCTAATCCCATCCGCGCCTCACCGGAATCGCTCGCGCTCATCATCTGTGTTGTTTTGGTTTGGTTTGGGATGTTCAGATAAGGAGGGAGATTGGGACGCTCAAGCTGCTCAAGCACCCCAACGTCGTCCGCCTGCACGAGGTAACGTCTCCACTACTCTCCGATCATCACCACCCTCTGGCTTTTTTTCTGCCTCTTTTTCTCGATTTTCTTTCCTGGATTTTGTTTCATTCTGGACGAGTTCATCGTCAGGTTCTCAACTTCCCCACGAGTCCTGACAATTTTTTTTTTCACACGAGACCTGACACTTGGCCGGTTACCTACAGTAGCTGCTTACTTACAAGGCAAAGAAACATTTCGATTCTAGTAGTTTAGTTTAACCACCAGGATAAGGATCAATCCTCACAAACTCTTTCTTGATCTCCTCGCCTCTTTTGAGAAGCAAACTAATTACGCAATGCAAAAGCATCACCACCGCCTCACGTCATGCCACCTCGCCGCCGGCGGTTCACCCCTCGCCGCCGCCGCCGTAGCCGCCGTCAAACTTCGATTGATCATCACGGACAGTCCACGCCGCGTTCTCCGTGTGATTCAGCCTCTCGCGTGTTTATACGCAACGAATGAATCCATCACCGGTCAATCTGGAACACGAATTTTCTTCTGATTAAAAATTTTCAGGGAGCGACAAGAATTTCGTCAGAGCTTTTCCTTCTCCTCATACATGACCTCACGTTCTCTCTCTCTCTCTCCCCCCCCCCCCCCCCCCCGAAAAATCAGCACCGTGTCGAATGAAAGGCGCCTGATACGTCCACGTCACCCGGATTCCGCGAACCGACGGCTCCGATGGAATCCCCCCCGTATCCTCACAGGAGCGAGGGGCCCCACCCTGGCGTTTACTCACATTCCTTGCCTGCCTCTTGGTCTACCCGTCGAGGCATGTGGTGGTGGGCCCGGTAGGCCGGCCCCTCGGCCCTGCTGGAGCTGGGCCCACGGTGTCAGCGTCACGGGCTGTCTCTGTCCGGGTGCTTTTAGCCCAGAGTGCAACGTCCCCGTAAGCCCGGGCGCGCCGCACCACCACCACCCAAGTCACCCACCGTGTGGGCCCAGCAGACTTGGCAACGCGCGGGGCCCGCACACGTGTGTCCGGTGACGGGGCCCACCGTGCCATCCTTCCCTGTGGGCCCACAAGAACAGTTAGAGGAGGTCAGGGTGGGGGGGGGGGGGGGGGAGGGACGCATGATGAATGGAGATGATGGGGGAGATGAACAGTGTGGTGATAGAAATTTGAGAGGAGCAAGCAATCAAAGCATCGAACTGCTCTCACCTAACGATGGCAGTTCTTGTCATATGGTTGCATTACCAGAACGGCGATGCTCGTACCCATAATGTGACATCTAAGTACACAAAAACAGTACATAATCTGATTTGTTGGTGATAACAATTATGGTAATAATGCTTTTTCTTGAGTCATATGATGCAAGCAGCAAGGACTGAGAATTGGCAAAAGTAGAGGTTGTCATGGTGCACAGATATCTGTTGTTGTCGTAGTAAACGAGTGGTGTTAGCAAGGGAACAAAAAAGACGTTTTGTCGTTGCTCTTTAGTTGAACATGCAGTTCTTCAGGGAGGTCCATTTGGGTTTCTTGAGAACAGTTCTGATCTGCGTAATTTGCCCAGATGAAGAACCAGTGAGTGATCATGGAATTGATATATTGTTTTTCTTTTTTCAGGTGGCTGCTAGCAAAACTAAGATTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATTGTAAGATATGCAAGCCTTGTTGGTGCTGTTGCTTTTTCGTGTAAAAATTGCTCGTATCTTGTTAATACTGATATTTTTTTTCCATTGCTAATTTTTGAAGGCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAGTTAATCGATGCTGTGAGCTATTGCCATGATAAAGGTGTCTACCACAGAGACCTTAAGGTACCCGACATAAATATTTTCAGCTTTTTACATGATGGATGCCTGAGTTACATTCTAATACGCAATTGTAATCAGATTTATTTTCTTGCTCATACTCATCGCAATCAAACTAAACTAGAGAATTATATGATTCTCCTGTGACAGAATTTTCTTCTTTATTCTACTCTTACAGCCCGAAAATGTTCTTGTGGATCGAAGAGGCAATATCAAGATCTCTGACTTTGGCCTAAGTGCTTTGCCTCAACATCTTGGGGTATGATAATGATTTGATTGAATTTTGTTCTATATAAATCACCTGTTGTGCAATTTGCTGAATCATTTGCACTCCCACTTTCAGAATGATGGATTGCTGCACACAACATGTGGCAGCCCCAATTATATTGCTCCTGAGGTAATAACTGATAACTGAAAATAATCTGAAACTAGTAACATCTTTCATTTCTCCTGCAGATGCTAATTCTGTAGCGAATCCATGCAGGTTTTGCAGAACCGAGGTTACGATGGCTCATTGTCAGATATCTGGTCTTGTGGAGTAATTCTCTATGTAATGCTCGTCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGGTTGGTTGCAAGATAAAGCATCTTTACAACTTTGCTCACAAATTTCAAATTTCAGACTGTCCTGATAGTGCGAAATTGTCATGTATCTTTAGATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGGGATCTTCTTCGAAGGATTCTTGAACCGAACCCGATGAAGAGGATCAACATAGCAGGGATCAAAGAGCATGAGTGGTTTCAGAAGGATTACACTCCTGTTGTTCCATATGACGACGATGATGACAATTATCTTGACTCAGTTCTTCCAATCAAAGAGGTATTCGTAGTTTTCTGAAAAACTGTAGAAATTATTAGGAAACTAACGAGTACTTGTTTCTCAGTATTTGTTGATGCTGAATTTCTGATTGGTAATTTCTGTTTCTTGAAGCAAATTGATGAAGCAAAGCAGGAAAAGCCTACTCATATCAATGCTTTTCAGTTGATTGGAATGGCTTCTGCCCTTGATCTTTCAGGTTTCTTTGAGGAAGAGGTTCGTATGATGTTTTCTCATTCTAGACTTCTTTCATACTTTTCAGTTATTTATCAGAACAAGACTATGTGTAGTGTAACTTACAATCTTACAACAATTTTCCGAATGAACCTATCCTAAGCTGCCTGGTGCTAATTGATGGATTATTGCAGGATGCGTCTCAAAGAAAGATAAGGTTCACATCAACACATTCACCAAAAGATTTATTCGACAAGATTGAGAATGTTGTGACGGAGATGGGATTCCAAGTCCAGAGGGGTAATAGCAAGGTAGATATACCAAGGCCTTTTTCTCATCACATCATCGTATTGTCAGGGAAGAAACAACAGCTCCAGTAAACCAAAAGCCTAAAATCATGTTTCTCTTTGCAGCTAAAGGTCATGAAAAATGGCAGGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGGTAAAATGCCACAGCACACTCCTTTCTTGTGCAATGTACATTCAGGAAGGATTGCATATCAGCTGGTACTTACATCATCACTCTTGATCTTCAGGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCATGGAGATCCTATATTGTATAGACAGGTACCATACCAATGAACAGCCTTACTTTCTATCACCGGCAACTTCAGTATTCTATCTTTCAGTGATTCAGTGATATGTGTGGTATCGCATCATCTCAGTAGTTTGTTTCCTGAAATAATTCTGCAGCTATGTGAGAGGCTATCAGATGAGCTAGGAGTGTGCAAGACAGAGCAGATTCAGAGGACGGAGTCGCTGGAGGATGATCTAGAGAGCTTCGACAGCGGATCTTCTCTGCCTGGTTTTTGAAGAATTGCCGCCCTGGATCATTTTGGTTAGAGTTAGAGGAACATGCTCTGTTCTTCATACAAGCGTAGGTTAGGATGTTGTATAGTGTACAAAGTGAGTGGTGCAAGTTAGCCACCGATGTTTAATATAAGGATTGCTCTCTTCTTGCCCGTCTGTTGGCCCAATTCTTTCCCATAATGAAATGAAATCATC

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CDS seq

ATGGTGAACGGAGAGGCGGAGGCGGAGTGCACGCGGGCGTCGCTGCTGGGGAGGTATGAGATCGGGCGCACGCTCGGGGAGGGCAACTTCGGCAAGGTCAAGTACGCGCGCCACCTCGCCACCGGCGCCCACTTCGCCATCAAGATCCTCGACCGCAACAAGATCCTCTCCCTCCGCTTCGACGACCAGATAAGGAGGGAGATTGGGACGCTCAAGCTGCTCAAGCACCCCAACGTCGTCCGCCTGCACGAGGTGGCTGCTAGCAAAACTAAGATTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATTGCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAGTTAATCGATGCTGTGAGCTATTGCCATGATAAAGGTGTCTACCACAGAGACCTTAAGCCCGAAAATGTTCTTGTGGATCGAAGAGGCAATATCAAGATCTCTGACTTTGGCCTAAGTGCTTTGCCTCAACATCTTGGGAATGATGGATTGCTGCACACAACATGTGGCAGCCCCAATTATATTGCTCCTGAGGTTTTGCAGAACCGAGGTTACGATGGCTCATTGTCAGATATCTGGTCTTGTGGAGTAATTCTCTATGTAATGCTCGTCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGGGATCTTCTTCGAAGGATTCTTGAACCGAACCCGATGAAGAGGATCAACATAGCAGGGATCAAAGAGCATGAGTGGTTTCAGAAGGATTACACTCCTGTTGTTCCATATGACGACGATGATGACAATTATCTTGACTCAGTTCTTCCAATCAAAGAGCAAATTGATGAAGCAAAGCAGGAAAAGCCTACTCATATCAATGCTTTTCAGTTGATTGGAATGGCTTCTGCCCTTGATCTTTCAGGTTTCTTTGAGGAAGAGGATGCGTCTCAAAGAAAGATAAGGTTCACATCAACACATTCACCAAAAGATTTATTCGACAAGATTGAGAATGTTGTGACGGAGATGGGATTCCAAGTCCAGAGGGGTAATAGCAAGCTAAAGGTCATGAAAAATGGCAGGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCATGGAGATCCTATATTGTATAGACAGCTATGTGAGAGGCTATCAGATGAGCTAGGAGTGTGCAAGACAGAGCAGATTCAGAGGACGGAGTCGCTGGAGGATGATCTAGAGAGCTTCGACAGCGGATCTTCTCTGCCTGGTTTTTGA

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Protein seq

MVNGEAEAECTRASLLGRYEIGRTLGEGNFGKVKYARHLATGAHFAIKILDRNKILSLRFDDQIRREIGTLKLLKHPNVVRLHEVAASKTKIYMVLEYVNGGELFDKIAVKGKLSEHEGRRLFQQLIDAVSYCHDKGVYHRDLKPENVLVDRRGNIKISDFGLSALPQHLGNDGLLHTTCGSPNYIAPEVLQNRGYDGSLSDIWSCGVILYVMLVGYLPFDDRNLVVLYQKIFKGDTQIPKWLSPSARDLLRRILEPNPMKRINIAGIKEHEWFQKDYTPVVPYDDDDDNYLDSVLPIKEQIDEAKQEKPTHINAFQLIGMASALDLSGFFEEEDASQRKIRFTSTHSPKDLFDKIENVVTEMGFQVQRGNSKLKVMKNGRGSKNLRNPSSFLVCTEVVELGPSLYVVELKKSHGDPILYRQLCERLSDELGVCKTEQIQRTESLEDDLESFDSGSSLPGF

Function CBL-interacting protein kinase 1 [UniProtKB/Swiss-Prot:Q9LGV5]

Transcripts

Gene Transcript Chromosome Start End Strand Source
Os01g0292200 Os01t0292200-01 Chr01 10622951 10627532 + irgsp1_rep
CDS seq

ATGGTGAACGGAGAGGCGGAGGCGGAGTGCACGCGGGCGTCGCTGCTGGGGAGGTATGAGATCGGGCGCACGCTCGGGGAGGGCAACTTCGGCAAGGTCAAGTACGCGCGCCACCTCGCCACCGGCGCCCACTTCGCCATCAAGATCCTCGACCGCAACAAGATCCTCTCCCTCCGCTTCGACGACCAGATAAGGAGGGAGATTGGGACGCTCAAGCTGCTCAAGCACCCCAACGTCGTCCGCCTGCACGAGGTGGCTGCTAGCAAAACTAAGATTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATTGCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAGTTAATCGATGCTGTGAGCTATTGCCATGATAAAGGTGTCTACCACAGAGACCTTAAGCCCGAAAATGTTCTTGTGGATCGAAGAGGCAATATCAAGATCTCTGACTTTGGCCTAAGTGCTTTGCCTCAACATCTTGGGAATGATGGATTGCTGCACACAACATGTGGCAGCCCCAATTATATTGCTCCTGAGGTTTTGCAGAACCGAGGTTACGATGGCTCATTGTCAGATATCTGGTCTTGTGGAGTAATTCTCTATGTAATGCTCGTCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGGGATCTTCTTCGAAGGATTCTTGAACCGAACCCGATGAAGAGGATCAACATAGCAGGGATCAAAGAGCATGAGTGGTTTCAGAAGGATTACACTCCTGTTGTTCCATATGACGACGATGATGACAATTATCTTGACTCAGTTCTTCCAATCAAAGAGCAAATTGATGAAGCAAAGCAGGAAAAGCCTACTCATATCAATGCTTTTCAGTTGATTGGAATGGCTTCTGCCCTTGATCTTTCAGGTTTCTTTGAGGAAGAGGATGCGTCTCAAAGAAAGATAAGGTTCACATCAACACATTCACCAAAAGATTTATTCGACAAGATTGAGAATGTTGTGACGGAGATGGGATTCCAAGTCCAGAGGGGTAATAGCAAGCTAAAGGTCATGAAAAATGGCAGGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCATGGAGATCCTATATTGTATAGACAGCTATGTGAGAGGCTATCAGATGAGCTAGGAGTGTGCAAGACAGAGCAGATTCAGAGGACGGAGTCGCTGGAGGATGATCTAGAGAGCTTCGACAGCGGATCTTCTCTGCCTGGTTTTTGA

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Protein seq

MVNGEAEAECTRASLLGRYEIGRTLGEGNFGKVKYARHLATGAHFAIKILDRNKILSLRFDDQIRREIGTLKLLKHPNVVRLHEVAASKTKIYMVLEYVNGGELFDKIAVKGKLSEHEGRRLFQQLIDAVSYCHDKGVYHRDLKPENVLVDRRGNIKISDFGLSALPQHLGNDGLLHTTCGSPNYIAPEVLQNRGYDGSLSDIWSCGVILYVMLVGYLPFDDRNLVVLYQKIFKGDTQIPKWLSPSARDLLRRILEPNPMKRINIAGIKEHEWFQKDYTPVVPYDDDDDNYLDSVLPIKEQIDEAKQEKPTHINAFQLIGMASALDLSGFFEEEDASQRKIRFTSTHSPKDLFDKIENVVTEMGFQVQRGNSKLKVMKNGRGSKNLRNPSSFLVCTEVVELGPSLYVVELKKSHGDPILYRQLCERLSDELGVCKTEQIQRTESLEDDLESFDSGSSLPGF

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Gene Transcript Chromosome Start End Strand Source
Os01g0292200 Os01t0292200-02 Chr01 10625861 10627489 + irgsp1_rep
CDS seq

TACGATGGCTCATTGTCAGATATCTGGTCTTGTGGAGTAATTCTCTATGTAATGCTCGTCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGGGATCTTCTTCGAAGGATTCTTGAACCGAACCCGATGAAGAGGATCAACATAGCAGGGATCAAAGAGCATGAGTGGTTTCAGAAGGATTACACTCCTGTTGTTCCATATGACGACGATGATGACAATTATCTTGACTCAGTTCTTCCAATCAAAGAGCAAATTGATGAAGCAAAGCAGGAAAAGCCTACTCATATCAATGCTTTTCAGTTGATTGGAATGGCTTCTGCCCTTGATCTTTCAGGTTTCTTTGAGGAAGAGGATGCGTCTCAAAGAAAGATAAGGTTCACATCAACACATTCACCAAAAGATTTATTCGACAAGATTGAGAATGTTGTGACGGAGATGGGATTCCAAGTCCAGAGGGGTAATAGCAAGCTAAAGGTCATGAAAAATGGCAGGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCATGGAGATCCTATATTGTATAGACAGCTATGTGAGAGGCTATCAGATGAGCTAGGAGTGTGCAAGACAGAGCAGATTCAGAGGACGGAGTCGCTGGAGGATGATCTAGAGAGCTTCGACAGCGGATCTTCTCTGCCTGGTTTTTGA

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Protein seq

YDGSLSDIWSCGVILYVMLVGYLPFDDRNLVVLYQKIFKGDTQIPKWLSPSARDLLRRILEPNPMKRINIAGIKEHEWFQKDYTPVVPYDDDDDNYLDSVLPIKEQIDEAKQEKPTHINAFQLIGMASALDLSGFFEEEDASQRKIRFTSTHSPKDLFDKIENVVTEMGFQVQRGNSKLKVMKNGRGSKNLRNPSSFLVCTEVVELGPSLYVVELKKSHGDPILYRQLCERLSDELGVCKTEQIQRTESLEDDLESFDSGSSLPGF

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Gene Transcript Chromosome Start End Strand Source
Os01g0292200 Os01t0292200-03 Chr01 10627018 10627489 + irgsp1_rep
CDS seq

GTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCATGGAGATCCTATATTGTATAGACAGCTATGTGAGAGGCTATCAGATGAGCTAGGAGTGTGCAAGACAGAGCAGATTCAGAGGACGGAGTCGCTGGAGGATGATCTAGAGAGCTTCGACAGCGGATCTTCTCTGCCTGGTTTTTGA

Protein seq

VVELGPSLYVVELKKSHGDPILYRQLCERLSDELGVCKTEQIQRTESLEDDLESFDSGSSLPGF

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM None None None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0292200 RBH 29.674225 31.816095 36.166748
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g18800 RBH 14.396140 15.800244 6.357312
Nipponbare | IRGSP 1.0 | RAP-db Os05g0136200 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0013290 RBH 8.720076 49.452099 9.582980
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0013020 RBH 10.214009 11.110823 14.043918
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0013310 RBH 22.940899 49.713387 38.933228
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0012770 RBH 3.967312 0.906471 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0012880 RBH 225.630356 17.161728 48.015369
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0176600 RBH 106.8952025 41.9772305 43.870604
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0012820 RBH 2.991793 2.373509 9.136690
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0175300 RBH 115.6427765 24.4889655 20.74057
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0012810 RBH 7.367108 0.557754 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0012910 RBH 26.646652 25.617683 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0012870 RBH 261.792084 58.598324 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0012970 RBH 9.312641 2.221314 16.841307
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0012680 RBH 6.108485 19.186014 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G012970 RBH 12.878938 3.650191 13.298151
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0012740 RBH 15.887058 39.756172 56.958439
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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