Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g18800 | OGI:01032210 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:10622795-10627552 | ||||||||
| Gene Symbol | CIPK01, OsCIPK01, CIPK1, OsCIPK1, OsSnRK3.3, SnRK3.3 | ||||||||||
| DNA seq | CCTACGGAAACACAACCTCCTGAGAGACCAGCCAAGCCCAAAAGACGAACGAAGGAAGGAAGCAGAGCAACGCAAGCAGACAATAGCAGCAGAGAGGCAACGAGCGGCGAGGGAGCTACTATAAGTACCCACCCCCGTCTCCCTCCCTCCCTCCCCGTTCATTCCTCTCCCCCCCCCCCCCTGAACCCGGCCAACTCCGGCGAGAGAGACATAGATAGCGTGTGAGACAGTATAAAGATAGAGAGGGAGAGGTAGTTTTTTGTTGCCGGCTTGCGGATTTATTGTAGGAGATCAGGTCAGTTTCGTTTTCTTGCCGGCGCGGCGGGCGTTTGTTGGGTGCGGCGGGCGGGGAGGAGCTCGTGAATGGTGAACGGAGAGGCGGAGGCGGAGTGCACGCGGGCGTCGCTGCTGGGGAGGTATGAGATCGGGCGCACGCTCGGGGAGGGCAACTTCGGCAAGGTCAAGTACGCGCGCCACCTCGCCACCGGCGCCCACTTCGCCATCAAGATCCTCGACCGCAACAAGATCCTCTCCCTCCGCTTCGACGACCAGGTATTTGCTCCCTCTAATCCCATCCGCGCCTCACCGGAATCGCTCGCGCTCATCATCTGTGTTGTTTTGGTTTGGTTTGGGATGTTCAGATAAGGAGGGAGATTGGGACGCTCAAGCTGCTCAAGCACCCCAACGTCGTCCGCCTGCACGAGGTAACGTCTCCACTACTCTCCGATCATCACCACCCTCTGGCTTTTTTTCTGCCTCTTTTTCTCGATTTTCTTTCCTGGATTTTGTTTCATTCTGGACGAGTTCATCGTCAGGTTCTCAACTTCCCCACGAGTCCTGACAATTTTTTTTTTCACACGAGACCTGACACTTGGCCGGTTACCTACAGTAGCTGCTTACTTACAAGGCAAAGAAACATTTCGATTCTAGTAGTTTAGTTTAACCACCAGGATAAGGATCAATCCTCACAAACTCTTTCTTGATCTCCTCGCCTCTTTTGAGAAGCAAACTAATTACGCAATGCAAAAGCATCACCACCGCCTCACGTCATGCCACCTCGCCGCCGGCGGTTCACCCCTCGCCGCCGCCGCCGTAGCCGCCGTCAAACTTCGATTGATCATCACGGACAGTCCACGCCGCGTTCTCCGTGTGATTCAGCCTCTCGCGTGTTTATACGCAACGAATGAATCCATCACCGGTCAATCTGGAACACGAATTTTCTTCTGATTAAAAATTTTCAGGGAGCGACAAGAATTTCGTCAGAGCTTTTCCTTCTCCTCATACATGACCTCACGTTCTCTCTCTCTCTCTCCCCCCCCCCCCCCCCCCCGAAAAATCAGCACCGTGTCGAATGAAAGGCGCCTGATACGTCCACGTCACCCGGATTCCGCGAACCGACGGCTCCGATGGAATCCCCCCCGTATCCTCACAGGAGCGAGGGGCCCCACCCTGGCGTTTACTCACATTCCTTGCCTGCCTCTTGGTCTACCCGTCGAGGCATGTGGTGGTGGGCCCGGTAGGCCGGCCCCTCGGCCCTGCTGGAGCTGGGCCCACGGTGTCAGCGTCACGGGCTGTCTCTGTCCGGGTGCTTTTAGCCCAGAGTGCAACGTCCCCGTAAGCCCGGGCGCGCCGCACCACCACCACCCAAGTCACCCACCGTGTGGGCCCAGCAGACTTGGCAACGCGCGGGGCCCGCACACGTGTGTCCGGTGACGGGGCCCACCGTGCCATCCTTCCCTGTGGGCCCACAAGAACAGTTAGAGGAGGTCAGGGTGGGGGGGGGGGGGGGGGAGGGACGCATGATGAATGGAGATGATGGGGGAGATGAACAGTGTGGTGATAGAAATTTGAGAGGAGCAAGCAATCAAAGCATCGAACTGCTCTCACCTAACGATGGCAGTTCTTGTCATATGGTTGCATTACCAGAACGGCGATGCTCGTACCCATAATGTGACATCTAAGTACACAAAAACAGTACATAATCTGATTTGTTGGTGATAACAATTATGGTAATAATGCTTTTTCTTGAGTCATATGATGCAAGCAGCAAGGACTGAGAATTGGCAAAAGTAGAGGTTGTCATGGTGCACAGATATCTGTTGTTGTCGTAGTAAACGAGTGGTGTTAGCAAGGGAACAAAAAAGACGTTTTGTCGTTGCTCTTTAGTTGAACATGCAGTTCTTCAGGGAGGTCCATTTGGGTTTCTTGAGAACAGTTCTGATCTGCGTAATTTGCCCAGATGAAGAACCAGTGAGTGATCATGGAATTGATATATTGTTTTTCTTTTTTCAGGTGGCTGCTAGCAAAACTAAGATTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATTGTAAGATATGCAAGCCTTGTTGGTGCTGTTGCTTTTTCGTGTAAAAATTGCTCGTATCTTGTTAATACTGATATTTTTTTTCCATTGCTAATTTTTGAAGGCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAGTTAATCGATGCTGTGAGCTATTGCCATGATAAAGGTGTCTACCACAGAGACCTTAAGGTACCCGACATAAATATTTTCAGCTTTTTACATGATGGATGCCTGAGTTACATTCTAATACGCAATTGTAATCAGATTTATTTTCTTGCTCATACTCATCGCAATCAAACTAAACTAGAGAATTATATGATTCTCCTGTGACAGAATTTTCTTCTTTATTCTACTCTTACAGCCCGAAAATGTTCTTGTGGATCGAAGAGGCAATATCAAGATCTCTGACTTTGGCCTAAGTGCTTTGCCTCAACATCTTGGGGTATGATAATGATTTGATTGAATTTTGTTCTATATAAATCACCTGTTGTGCAATTTGCTGAATCATTTGCACTCCCACTTTCAGAATGATGGATTGCTGCACACAACATGTGGCAGCCCCAATTATATTGCTCCTGAGGTAATAACTGATAACTGAAAATAATCTGAAACTAGTAACATCTTTCATTTCTCCTGCAGATGCTAATTCTGTAGCGAATCCATGCAGGTTTTGCAGAACCGAGGTTACGATGGCTCATTGTCAGATATCTGGTCTTGTGGAGTAATTCTCTATGTAATGCTCGTCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGGTTGGTTGCAAGATAAAGCATCTTTACAACTTTGCTCACAAATTTCAAATTTCAGACTGTCCTGATAGTGCGAAATTGTCATGTATCTTTAGATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGGGATCTTCTTCGAAGGATTCTTGAACCGAACCCGATGAAGAGGATCAACATAGCAGGGATCAAAGAGCATGAGTGGTTTCAGAAGGATTACACTCCTGTTGTTCCATATGACGACGATGATGACAATTATCTTGACTCAGTTCTTCCAATCAAAGAGGTATTCGTAGTTTTCTGAAAAACTGTAGAAATTATTAGGAAACTAACGAGTACTTGTTTCTCAGTATTTGTTGATGCTGAATTTCTGATTGGTAATTTCTGTTTCTTGAAGCAAATTGATGAAGCAAAGCAGGAAAAGCCTACTCATATCAATGCTTTTCAGTTGATTGGAATGGCTTCTGCCCTTGATCTTTCAGGTTTCTTTGAGGAAGAGGTTCGTATGATGTTTTCTCATTCTAGACTTCTTTCATACTTTTCAGTTATTTATCAGAACAAGACTATGTGTAGTGTAACTTACAATCTTACAACAATTTTCCGAATGAACCTATCCTAAGCTGCCTGGTGCTAATTGATGGATTATTGCAGGATGCGTCTCAAAGAAAGATAAGGTTCACATCAACACATTCACCAAAAGATTTATTCGACAAGATTGAGAATGTTGTGACGGAGATGGGATTCCAAGTCCAGAGGGGTAATAGCAAGGTAGATATACCAAGGCCTTTTTCTCATCACATCATCGTATTGTCAGGGAAGAAACAACAGCTCCAGTAAACCAAAAGCCTAAAATCATGTTTCTCTTTGCAGCTAAAGGTCATGAAAAATGGCAGGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGGTAAAATGCCACAGCACACTCCTTTCTTGTGCAATGTACATTCAGGAAGGATTGCATATCAGCTGGTACTTACATCATCACTCTTGATCTTCAGGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCATGGAGATCCTATATTGTATAGACAGGTACCATACCAATGAACAGCCTTACTTTCTATCACCGGCAACTTCAGTATTCTATCTTTCAGTGATTCAGTGATATGTGTGGTATCGCATCATCTCAGTAGTTTGTTTCCTGAAATAATTCTGCAGCTATGTGAGAGGCTATCAGATGAGCTAGGAGTGTGCAAGACAGAGCAGATTCAGAGGACGGAGTCGCTGGAGGATGATCTAGAGAGCTTCGACAGCGGATCTTCTCTGCCTGGTTTTTGAAGAATTGCCGCCCTGGATCATTTTGGTTAGAGTTAGAGGAACATGCTCTGTTCTTCATACAAGCGTAGGTTAGGATGTTGTATAGTGTACAAAGTGAGTGGTGCAAGTTAGCCACCGATGTTTAATATAAGGATTGCTCTCTTCTTGCCCGTCTGTTGGCCCAATTCTTTCCCATAATGAAATGAAATCATCAGAAATGGACGCTTGCAAAA
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| CDS seq | ATGGTGAACGGAGAGGCGGAGGCGGAGTGCACGCGGGCGTCGCTGCTGGGGAGGTATGAGATCGGGCGCACGCTCGGGGAGGGCAACTTCGGCAAGGTCAAGTACGCGCGCCACCTCGCCACCGGCGCCCACTTCGCCATCAAGATCCTCGACCGCAACAAGATCCTCTCCCTCCGCTTCGACGACCAGATAAGGAGGGAGATTGGGACGCTCAAGCTGCTCAAGCACCCCAACGTCGTCCGCCTGCACGAGGTGGCTGCTAGCAAAACTAAGATTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATTGCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAGTTAATCGATGCTGTGAGCTATTGCCATGATAAAGGTGTCTACCACAGAGACCTTAAGCCCGAAAATGTTCTTGTGGATCGAAGAGGCAATATCAAGATCTCTGACTTTGGCCTAAGTGCTTTGCCTCAACATCTTGGGAATGATGGATTGCTGCACACAACATGTGGCAGCCCCAATTATATTGCTCCTGAGGTTTTGCAGAACCGAGGTTACGATGGCTCATTGTCAGATATCTGGTCTTGTGGAGTAATTCTCTATGTAATGCTCGTCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGGGATCTTCTTCGAAGGATTCTTGAACCGAACCCGATGAAGAGGATCAACATAGCAGGGATCAAAGAGCATGAGTGGTTTCAGAAGGATTACACTCCTGTTGTTCCATATGACGACGATGATGACAATTATCTTGACTCAGTTCTTCCAATCAAAGAGCAAATTGATGAAGCAAAGCAGGAAAAGCCTACTCATATCAATGCTTTTCAGTTGATTGGAATGGCTTCTGCCCTTGATCTTTCAGGTTTCTTTGAGGAAGAGGATGCGTCTCAAAGAAAGATAAGGTTCACATCAACACATTCACCAAAAGATTTATTCGACAAGATTGAGAATGTTGTGACGGAGATGGGATTCCAAGTCCAGAGGGGTAATAGCAAGCTAAAGGTCATGAAAAATGGCAGGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCATGGAGATCCTATATTGTATAGACAGCTATGTGAGAGGCTATCAGATGAGCTAGGAGTGTGCAAGACAGAGCAGATTCAGAGGACGGAGTCGCTGGAGGATGATCTAGAGAGCTTCGACAGCGGATCTTCTCTGCCTGGTTTTTGA
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| Protein seq | MVNGEAEAECTRASLLGRYEIGRTLGEGNFGKVKYARHLATGAHFAIKILDRNKILSLRFDDQIRREIGTLKLLKHPNVVRLHEVAASKTKIYMVLEYVNGGELFDKIAVKGKLSEHEGRRLFQQLIDAVSYCHDKGVYHRDLKPENVLVDRRGNIKISDFGLSALPQHLGNDGLLHTTCGSPNYIAPEVLQNRGYDGSLSDIWSCGVILYVMLVGYLPFDDRNLVVLYQKIFKGDTQIPKWLSPSARDLLRRILEPNPMKRINIAGIKEHEWFQKDYTPVVPYDDDDDNYLDSVLPIKEQIDEAKQEKPTHINAFQLIGMASALDLSGFFEEEDASQRKIRFTSTHSPKDLFDKIENVVTEMGFQVQRGNSKLKVMKNGRGSKNLRNPSSFLVCTEVVELGPSLYVVELKKSHGDPILYRQLCERLSDELGVCKTEQIQRTESLEDDLESFDSGSSLPGF |
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| Function | CBL-interacting protein kinase 1 [UniProtKB/Swiss-Prot:Q9LGV5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g18800 | LOC_Os01g18800.1 | Chr01 | 10622795 | 10627548 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTGAACGGAGAGGCGGAGGCGGAGTGCACGCGGGCGTCGCTGCTGGGGAGGTATGAGATCGGGCGCACGCTCGGGGAGGGCAACTTCGGCAAGGTCAAGTACGCGCGCCACCTCGCCACCGGCGCCCACTTCGCCATCAAGATCCTCGACCGCAACAAGATCCTCTCCCTCCGCTTCGACGACCAGATAAGGAGGGAGATTGGGACGCTCAAGCTGCTCAAGCACCCCAACGTCGTCCGCCTGCACGAGGTGGCTGCTAGCAAAACTAAGATTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATTGCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAGTTAATCGATGCTGTGAGCTATTGCCATGATAAAGGTGTCTACCACAGAGACCTTAAGCCCGAAAATGTTCTTGTGGATCGAAGAGGCAATATCAAGATCTCTGACTTTGGCCTAAGTGCTTTGCCTCAACATCTTGGGAATGATGGATTGCTGCACACAACATGTGGCAGCCCCAATTATATTGCTCCTGAGGTTTTGCAGAACCGAGGTTACGATGGCTCATTGTCAGATATCTGGTCTTGTGGAGTAATTCTCTATGTAATGCTCGTCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGGGATCTTCTTCGAAGGATTCTTGAACCGAACCCGATGAAGAGGATCAACATAGCAGGGATCAAAGAGCATGAGTGGTTTCAGAAGGATTACACTCCTGTTGTTCCATATGACGACGATGATGACAATTATCTTGACTCAGTTCTTCCAATCAAAGAGCAAATTGATGAAGCAAAGCAGGAAAAGCCTACTCATATCAATGCTTTTCAGTTGATTGGAATGGCTTCTGCCCTTGATCTTTCAGGTTTCTTTGAGGAAGAGGATGCGTCTCAAAGAAAGATAAGGTTCACATCAACACATTCACCAAAAGATTTATTCGACAAGATTGAGAATGTTGTGACGGAGATGGGATTCCAAGTCCAGAGGGGTAATAGCAAGCTAAAGGTCATGAAAAATGGCAGGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCATGGAGATCCTATATTGTATAGACAGCTATGTGAGAGGCTATCAGATGAGCTAGGAGTGTGCAAGACAGAGCAGATTCAGAGGACGGAGTCGCTGGAGGATGATCTAGAGAGCTTCGACAGCGGATCTTCTCTGCCTGGTTTTTGA
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| Protein seq | MVNGEAEAECTRASLLGRYEIGRTLGEGNFGKVKYARHLATGAHFAIKILDRNKILSLRFDDQIRREIGTLKLLKHPNVVRLHEVAASKTKIYMVLEYVNGGELFDKIAVKGKLSEHEGRRLFQQLIDAVSYCHDKGVYHRDLKPENVLVDRRGNIKISDFGLSALPQHLGNDGLLHTTCGSPNYIAPEVLQNRGYDGSLSDIWSCGVILYVMLVGYLPFDDRNLVVLYQKIFKGDTQIPKWLSPSARDLLRRILEPNPMKRINIAGIKEHEWFQKDYTPVVPYDDDDDNYLDSVLPIKEQIDEAKQEKPTHINAFQLIGMASALDLSGFFEEEDASQRKIRFTSTHSPKDLFDKIENVVTEMGFQVQRGNSKLKVMKNGRGSKNLRNPSSFLVCTEVVELGPSLYVVELKKSHGDPILYRQLCERLSDELGVCKTEQIQRTESLEDDLESFDSGSSLPGF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g18800 | LOC_Os01g18800.2 | Chr01 | 10622795 | 10627543 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTGAACGGAGAGGCGGAGGCGGAGTGCACGCGGGCGTCGCTGCTGGGGAGGTATGAGATCGGGCGCACGCTCGGGGAGGGCAACTTCGGCAAGGTCAAGTACGCGCGCCACCTCGCCACCGGCGCCCACTTCGCCATCAAGATCCTCGACCGCAACAAGATCCTCTCCCTCCGCTTCGACGACCAGATAAGGAGGGAGATTGGGACGCTCAAGCTGCTCAAGCACCCCAACGTCGTCCGCCTGCACGAGGTGGCTGCTAGCAAAACTAAGATTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATTGCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAGTTAATCGATGCTGTGAGCTATTGCCATGATAAAGGTGTCTACCACAGAGACCTTAAGCCCGAAAATGTTCTTGTGGATCGAAGAGGCAATATCAAGATCTCTGACTTTGGCCTAAGTGCTTTGCCTCAACATCTTGGGAATGATGGATTGCTGCACACAACATGTGGCAGCCCCAATTATATTGCTCCTGAGGTTTTGCAGAACCGAGGTTACGATGGCTCATTGTCAGATATCTGGTCTTGTGGAGTAATTCTCTATGTAATGCTCGTCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGGGATCTTCTTCGAAGGATTCTTGAACCGAACCCGATGAAGAGGATCAACATAGCAGGGATCAAAGAGCATGAGTGGTTTCAGAAGGATTACACTCCTGTTGTTCCATATGACGACGATGATGACAATTATCTTGACTCAGTTCTTCCAATCAAAGAGCAAATTGATGAAGCAAAGCAGGAAAAGCCTACTCATATCAATGCTTTTCAGTTGATTGGAATGGCTTCTGCCCTTGATCTTTCAGGTTTCTTTGAGGAAGAGGATGCGTCTCAAAGAAAGATAAGGTTCACATCAACACATTCACCAAAAGATTTATTCGACAAGATTGAGAATGTTGTGACGGAGATGGGATTCCAAGTCCAGAGGGGTAATAGCAAGCTAAAGGTCATGAAAAATGGCAGGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCATGGAGATCCTATATTGTATAGACAGGTACCATACCAATGA
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| Protein seq | MVNGEAEAECTRASLLGRYEIGRTLGEGNFGKVKYARHLATGAHFAIKILDRNKILSLRFDDQIRREIGTLKLLKHPNVVRLHEVAASKTKIYMVLEYVNGGELFDKIAVKGKLSEHEGRRLFQQLIDAVSYCHDKGVYHRDLKPENVLVDRRGNIKISDFGLSALPQHLGNDGLLHTTCGSPNYIAPEVLQNRGYDGSLSDIWSCGVILYVMLVGYLPFDDRNLVVLYQKIFKGDTQIPKWLSPSARDLLRRILEPNPMKRINIAGIKEHEWFQKDYTPVVPYDDDDDNYLDSVLPIKEQIDEAKQEKPTHINAFQLIGMASALDLSGFFEEEDASQRKIRFTSTHSPKDLFDKIENVVTEMGFQVQRGNSKLKVMKNGRGSKNLRNPSSFLVCTEVVELGPSLYVVELKKSHGDPILYRQVPYQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g18800 | LOC_Os01g18800.3 | Chr01 | 10622795 | 10627552 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTGAACGGAGAGGCGGAGGCGGAGTGCACGCGGGCGTCGCTGCTGGGGAGGTATGAGATCGGGCGCACGCTCGGGGAGGGCAACTTCGGCAAGGTCAAGTACGCGCGCCACCTCGCCACCGGCGCCCACTTCGCCATCAAGATCCTCGACCGCAACAAGATCCTCTCCCTCCGCTTCGACGACCAGATAAGGAGGGAGATTGGGACGCTCAAGCTGCTCAAGCACCCCAACGTCGTCCGCCTGCACGAGGTGGCTGCTAGCAAAACTAAGATTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATTGCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAGTTAATCGATGCTGTGAGCTATTGCCATGATAAAGGTGTCTACCACAGAGACCTTAAGCCCGAAAATGTTCTTGTGGATCGAAGAGGCAATATCAAGATCTCTGACTTTGGCCTAAGTGCTTTGCCTCAACATCTTGGGAATGATGGATTGCTGCACACAACATGTGGCAGCCCCAATTATATTGCTCCTGAGGTTTTGCAGAACCGAGGTTACGATGGCTCATTGTCAGATATCTGGTCTTGTGGAGTAATTCTCTATGTAATGCTCGTCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGGGATCTTCTTCGAAGGATTCTTGAACCGAACCCGATGAAGAGGATCAACATAGCAGGGATCAAAGAGCATGAGTGGTTTCAGAAGGATTACACTCCTGTTGTTCCATATGACGACGATGATGACAATTATCTTGACTCAGTTCTTCCAATCAAAGAGCAAATTGATGAAGCAAAGCAGGAAAAGCCTACTCATATCAATGCTTTTCAGTTGATTGGAATGGCTTCTGCCCTTGATCTTTCAGGTTTCTTTGAGGAAGAGGTTCGTATGATGTTTTCTCATTCTAGACTTCTTTCATACTTTTCAGTTATTTATCAGAACAAGACTATGTGTAGTGTAACTTACAATCTTACAACAATTTTCCGAATGAACCTATCCTAA
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| Protein seq | MVNGEAEAECTRASLLGRYEIGRTLGEGNFGKVKYARHLATGAHFAIKILDRNKILSLRFDDQIRREIGTLKLLKHPNVVRLHEVAASKTKIYMVLEYVNGGELFDKIAVKGKLSEHEGRRLFQQLIDAVSYCHDKGVYHRDLKPENVLVDRRGNIKISDFGLSALPQHLGNDGLLHTTCGSPNYIAPEVLQNRGYDGSLSDIWSCGVILYVMLVGYLPFDDRNLVVLYQKIFKGDTQIPKWLSPSARDLLRRILEPNPMKRINIAGIKEHEWFQKDYTPVVPYDDDDDNYLDSVLPIKEQIDEAKQEKPTHINAFQLIGMASALDLSGFFEEEVRMMFSHSRLLSYFSVIYQNKTMCSVTYNLTTIFRMNLS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g18800 | LOC_Os01g18800.4 | Chr01 | 10622808 | 10627548 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATTGCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAGTTAATCGATGCTGTGAGCTATTGCCATGATAAAGGTGTCTACCACAGAGACCTTAAGCCCGAAAATGTTCTTGTGGATCGAAGAGGCAATATCAAGATCTCTGACTTTGGCCTAAGTGCTTTGCCTCAACATCTTGGGAATGATGGATTGCTGCACACAACATGTGGCAGCCCCAATTATATTGCTCCTGAGGTTTTGCAGAACCGAGGTTACGATGGCTCATTGTCAGATATCTGGTCTTGTGGAGTAATTCTCTATGTAATGCTCGTCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGGGATCTTCTTCGAAGGATTCTTGAACCGAACCCGATGAAGAGGATCAACATAGCAGGGATCAAAGAGCATGAGTGGTTTCAGAAGGATTACACTCCTGTTGTTCCATATGACGACGATGATGACAATTATCTTGACTCAGTTCTTCCAATCAAAGAGCAAATTGATGAAGCAAAGCAGGAAAAGCCTACTCATATCAATGCTTTTCAGTTGATTGGAATGGCTTCTGCCCTTGATCTTTCAGGTTTCTTTGAGGAAGAGGATGCGTCTCAAAGAAAGATAAGGTTCACATCAACACATTCACCAAAAGATTTATTCGACAAGATTGAGAATGTTGTGACGGAGATGGGATTCCAAGTCCAGAGGGGTAATAGCAAGCTAAAGGTCATGAAAAATGGCAGGGGTTCAAAGAACCTCAGGAATCCATCATCATTCTTGGTCTGTACTGAGGTAGTCGAGCTCGGGCCATCCTTATATGTTGTCGAATTGAAGAAATCCCATGGAGATCCTATATTGTATAGACAGCTATGTGAGAGGCTATCAGATGAGCTAGGAGTGTGCAAGACAGAGCAGATTCAGAGGACGGAGTCGCTGGAGGATGATCTAGAGAGCTTCGACAGCGGATCTTCTCTGCCTGGTTTTTGA
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| Protein seq | MVLEYVNGGELFDKIAVKGKLSEHEGRRLFQQLIDAVSYCHDKGVYHRDLKPENVLVDRRGNIKISDFGLSALPQHLGNDGLLHTTCGSPNYIAPEVLQNRGYDGSLSDIWSCGVILYVMLVGYLPFDDRNLVVLYQKIFKGDTQIPKWLSPSARDLLRRILEPNPMKRINIAGIKEHEWFQKDYTPVVPYDDDDDNYLDSVLPIKEQIDEAKQEKPTHINAFQLIGMASALDLSGFFEEEDASQRKIRFTSTHSPKDLFDKIENVVTEMGFQVQRGNSKLKVMKNGRGSKNLRNPSSFLVCTEVVELGPSLYVVELKKSHGDPILYRQLCERLSDELGVCKTEQIQRTESLEDDLESFDSGSSLPGF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g18800 | LOC_Os01g18800.5 | Chr01 | 10622808 | 10625837 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTGAACGGAGAGGCGGAGGCGGAGTGCACGCGGGCGTCGCTGCTGGGGAGGTATGAGATCGGGCGCACGCTCGGGGAGGGCAACTTCGGCAAGGTCAAGTACGCGCGCCACCTCGCCACCGGCGCCCACTTCGCCATCAAGATCCTCGACCGCAACAAGATCCTCTCCCTCCGCTTCGACGACCAGATAAGGAGGGAGATTGGGACGCTCAAGCTGCTCAAGCACCCCAACGTCGTCCGCCTGCACGAGGTGGCTGCTAGCAAAACTAAGATTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATTGCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAGTTAATCGATGCTGTGAGCTATTGCCATGATAAAGGTGTCTACCACAGAGACCTTAAGCCCGAAAATGTTCTTGTGGATCGAAGAGGCAATATCAAGATCTCTGACTTTGGCCTAAGTGCTTTGCCTCAACATCTTGGGGTATGA
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| Protein seq | MVNGEAEAECTRASLLGRYEIGRTLGEGNFGKVKYARHLATGAHFAIKILDRNKILSLRFDDQIRREIGTLKLLKHPNVVRLHEVAASKTKIYMVLEYVNGGELFDKIAVKGKLSEHEGRRLFQQLIDAVSYCHDKGVYHRDLKPENVLVDRRGNIKISDFGLSALPQHLGV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 14.396140 | 15.800244 | 6.357312 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0292200 | RBH | 29.674225 | 31.816095 | 36.166748 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g04550 | RBH | 0.088432 | 0.090197 | 0.769338 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0292200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0013290 | RBH | 8.720076 | 49.452099 | 9.582980 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0013020 | RBH | 10.214009 | 11.110823 | 14.043918 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0013310 | RBH | 22.940899 | 49.713387 | 38.933228 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0012770 | RBH | 3.967312 | 0.906471 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0012880 | RBH | 225.630356 | 17.161728 | 48.015369 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0176600 | RBH | 106.8952025 | 41.9772305 | 43.870604 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0012820 | RBH | 2.991793 | 2.373509 | 9.136690 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0175300 | RBH | 115.6427765 | 24.4889655 | 20.74057 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0012810 | RBH | 7.367108 | 0.557754 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0012910 | RBH | 26.646652 | 25.617683 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0012870 | RBH | 261.792084 | 58.598324 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0012970 | RBH | 9.312641 | 2.221314 | 16.841307 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0012680 | RBH | 6.108485 | 19.186014 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G012970 | RBH | 12.878938 | 3.650191 | 13.298151 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0012740 | RBH | 15.887058 | 39.756172 | 56.958439 |
