Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsKYG_12g0000470		OGI:12000850 \| 8/16			KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)			Chr12:391067-395608		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		MFS7, OsMFS7
DNA seq		GGAATTAAGCAACAAGCTAAGCTAAGCTAGCCGGAGGAGGAAAAGGAGAGATCGATCGAGCGATGGAGCAGCAGCAGCAGGGGCGGAGGAGAGGCGCAGGATGGCGGCGTTGGGCGGTGCTGGTGGCGACGGTGTGGATACAGGCGGTGACGGGGACAAACTTCGACTTCTCGGCCTACTCGTCGGCGCTCAAGGCGTCCCTGGGTGTCTCGCAGGAGGCGCTCAACTACCTGGCCACCGCCTCCGACCTCGGCAAGGCGCTGGGCTGGTCGTCGGGCCTCGCCCTCATCCACCTCCCCCTCCCCGCCGTCCTCCTCCTCTCCGCCGCCTCCGGCCTCGCCGCATACGCCCTCCAGTACGCCCTCATCCTCGACTACCTCCACCTCCCCTACCCGCTCGTACGTACACTTGATCTCTTGAATTTCTTTTCTTTATTTATTATATCGATCGGCTTGTTTTCAGCTTCATTATTTAATTAGCTTGCTAGTTAATTACGAGTACCTAATTAAGGTATCCTTCCATTATGATTAACCGTGCGTGTTTTAGTACTAGCATATATGGTATGGAGATATATACATACATACATACAAGAAATATAATGGAGATCTTAGCTAATTAAGCTAGCCAACTGGAGTATACTGATTGATCCTAGCTAGCACGTACGTGGATGTATAGAGGCCAAGGCCAGCAGGGTTCGGAGATTCGAGATCGATAGGCAGTCCATTTCACAATGTAAGTCTCTAATATTTTCCATATTCATAGTGATGTTATTGAATTTAAACATATACATCTATCTAGATTCATTAACATTAATATAAATGTGTAAAATGCTAGAATGATTTACATTGTGAAACGGAGAAAGTACTACTACAGTAGTAGTAATGAAGCTACTGATCTGAGTGGCCACAAATAAGTTGCAATCATATATCACATTCATGGACGCAATTCTAACGTCCCATTCAACTGCTACTGAATTATATGTATATTAAATCGATATCTGAGAGACTCAATGCATCCATATCTCTCCGTCGCCGCGCCCACCTCTCGTTTTTCCTTGGCTTACAATTTTTTGGAATCGTCTGCTGCAATCGATTACGATTTACCAATATACTCCTACTGTGTATTACTCCCTTCGTATTTTAATATATGACGCTGTTGACTTTTTAACCAACGTTTAACTATTCGTTTTATTAATTTTTTTTTTGCAAATATGAAAATATTTAAGTCATGTTTAAACAACATTTGATGATGAATCAAATCACAATAAAATAAATGATAACTATATAAATTTTTTGAATAAGACGAATGGTCAAACGTTAAATAAAAAGTTAACGGCGTTATACATTGAAATATGGAGGTATGGAGGTAGTATAATATTACCCATGTTATACATAGTCAATCTTATATACTGTGTATATGCAGCAATAAGTTAATTTCTGCCTTAAACATGTATCTGGATTAATTGATTACTTCAATCAACTCAATACATATTTTGGGATTGAGGGAATAACAAACAACTCCTAACCAACAACACCCGCATATGCCATCATAAACCACGATCAAAAGTGTTTATTTAATTGATTCTTTCTCATCTCCCTTTTAATTTTCATAAATGCTAGCTGCTTGCGCCTATTTCAAAAGATGACGAGCCAAAAATAAAAATCCCACACACGATCGAAGAAGAAACAAACAAATGGTTCTCAAGTCTCAGCTTAAAATGGTCCACAAAAGTATAAATAGCTAAAACTCCATCGATAAGTTCACGCTTCACTCATGTAAAACTCACGAACACACTAACGCTACGGCACAATGTAAAACTACAATCCATTCTGTTACTCTAAACATCCAGGTAGCTCTGTGTCCTGAATTACAGTTAATAAAACTCGCTATCAAAATACCCATGCCAGTGAATCCTGCATTATTGGCATCATCATGAATTAATGCCTTCCTGCCCAACTATCAGTTTCAGCTTCAATCCAACTTTGACTAGCAGATGAACAAGCTACCATTCTCCCCCCAAAGAATTCTTCTTACAGAAGGACCATCACTACACTGTCTCCCCTTCTTTTGGTTTCTTTCTGACTGGTAGGTGTTGATGCAACTTGCCAAGTCACCTCCTTCCTTCAACTTCTCCATCATAAACAGTAGCAAGAAAGAAGCAGCACATCCTTTTTATCAGTTACAGTAACCAAATAGTATGAACGTATTCCTGATTTTAGGAGTCCATAACCAATCCTCTGCTACCATAACATACTTTGAATTGCATAATAAGAGTTGTTACACTGCATAGCTCAAAGACATAATTAGCCGTCCTGGTTACTCCTCTGAAACTAAAACAGCATGCCTAGACAAGGTCAGCAAGTTACCTATTATCAGACCGGCTGCAGTTTTCCTTTTCTGAAACCAAACGGACATGAGGCCTTTAACAAAGCAAGGTCTTCAACCGCCAAACTGAAGGCACTCCCTCTAAAACAGAAGCCACATCATCAGCCTAGAACAAAAGTCCTGACAAAGAAAAGCATTGCTAGCGCGTCAGCCATAAATGTGATCACAACTACAACATCACACATGCCTGTTGCATTGCATTTTTCAGTACTCAGAACAGCATCCTCAACCTGCTCATGCTTCACATATTCTTCCTTTCCTTGGGCAGATCTTTTGATGTCAGTAGGAAGTACGACATCCTTTTTACAGATGAGGAAGCATAACATCCTGATAAATACAAATACCAATTAGATCACAGAATTATTACCGAAGATCATGCCATTACAGTTTTTCCGTAACCGTACATAACACTCTCTTCTAAACGCTACTCGAAGCACCAAATCTGGATTTATCACTTTGTTGTATGCATTACATATTAGTATACTTCATGTCTTGCATACATTAAACCAGGATGTATGACCTGATCGTTGGTACATAATAACTTACTGGTAGGCATGTTGTCCTTTAACTCTCATCAACAGTATTAAACCAGCGATGTATGGACATGCTTTTTAACTGTTTGTGGCCAGTAAAACTGAGCTAACCAACTGATGGACTAATTTGGATCATGTATTACTATGCAGGTGTTCTTGATCTGCCTGGTAGCAGGTTGCAGTATCTGCTGGTTCAACACAGTATGCTTTGTGCTCTGCATTCGCAGTTTCTCCTCGAGCAATCGCCCACTGGCCCTCTCCCTCTCCATAAGTTTCAATGGGCTAAGTGCTGCATTCTACACCCTCTTTGCCAATGCCCTCTCCCCCTTTTCCCCATCTGTATACCTCCTTCTCAATGCAATTGTCCCTCTCGTTGTATCTCTTGTTGCACTGCCAGCAATACTCCTCTGCCACCCACATGACGGCCACCTCCACGTTGTGCCCAAGCATGACAAACATATCTTTCTTGGTCTCTACCTCCTCGCGTTCATCACTGGCATATATCTAGTGATCTTCGGCTCTTTCAACACAACCAACTCCACTGCATGGGTGGTCCTTACAGGTGCCATGGTCCTCCTCGCCCTCCCTCTCATCATCCCTGCCTCCTCCAGTTGTTCTCATGTGGACACACATGACCCTGAACCTACTGCTCAACTCAACCATGACGATTCAAAAAAACCACTTTTGCTCAATAATAACCACAGCACAGAGTCCAATGCCATGATCCAGAAAACAGTAGAACAGCCGATGCAGGATTGTTGCTTGGGGACAATACTGGAGAAGGGCCGCATGTTGGTTCTTTGTGAGGAGCATAGTGCAAAGAAGCTTATCCAGTGCATCGACTTCTGGCTATACTACATAGCCTACTTCTGTGGTGCCACTGTTGGGCTAGTGTACAGCAACAACTTGGGGCAAATTGCACAATCATTTCACCGGGAATCTCAGCTCACCATGCTTCTTGCCGTCTACTCCTCCTGTTCCTTCTTTGGCCGCCTTCTCTCTGCACTTCCAGACTTCCTTCACAGGTCCCTATGTCTTGTTCTATATACTTGCATGCATCTTAATTCTCACTAGCTGGTCCATAAACTAACTATATAATGAATTTGCATGCAGGAAGGTTTCATTTGCTCGGACAGGGTGGCTTGCAGCTGCGTTGGTTCCCATGCCAATGGCGTTCTTCCTAATGTGGAAATTGCATGATGTAAACACTCTGGTAGCAGGAACAGCGCTAATTGGCCTAAGCTCAGGCTTCATCTTTGCTGCAGCAGTGTCAGTGACCTCTGAGCTCTTTGGACCAAACAGCATTGGCATGAACCATAACATCCTCATCACCAACATCCCTCTTGGATCACTTCTCTATGGTCAGATTGCTGCCCTAGTGTATGATGCAAATGGCCTAAAGATGTCAGTAATAGAAAACCACAATGGCATGATTGACACTATGGTGGTTTGCATGGGGCCAAAGTGCTACTCAACCACATTCTTCGTGTGGGGTTGTATCACATTCCTAGGGTTGGTGTCAAGCATAATCCTATTCTTGAGAACAAGAACAGCTTACAGTGCTGCTAATGGTCAGCAAGTTATAAACACCACAGCCAAGTTTCGAGTTGACAGAACTCCTTGA More
CDS seq		ATGGAGCAGCAGCAGCAGGGGCGGAGGAGAGGCGCAGGATGGCGGCGTTGGGCGGTGCTGGTGGCGACGGTGTGGATACAGGCGGTGACGGGGACAAACTTCGACTTCTCGGCCTACTCGTCGGCGCTCAAGGCGTCCCTGGGTGTCTCGCAGGAGGCGCTCAACTACCTGGCCACCGCCTCCGACCTCGGCAAGGCGCTGGGCTGGTCGTCGGGCCTCGCCCTCATCCACCTCCCCCTCCCCGCCGTCCTCCTCCTCTCCGCCGCCTCCGGCCTCGCCGCATACGCCCTCCAGTACGCCCTCATCCTCGACTACCTCCACCTCCCCTACCCGCTCGTGTTCTTGATCTGCCTGGTAGCAGGTTGCAGTATCTGCTGGTTCAACACAGTATGCTTTGTGCTCTGCATTCGCAGTTTCTCCTCGAGCAATCGCCCACTGGCCCTCTCCCTCTCCATAAGTTTCAATGGGCTAAGTGCTGCATTCTACACCCTCTTTGCCAATGCCCTCTCCCCCTTTTCCCCATCTGTATACCTCCTTCTCAATGCAATTGTCCCTCTCGTTGTATCTCTTGTTGCACTGCCAGCAATACTCCTCTGCCACCCACATGACGGCCACCTCCACGTTGTGCCCAAGCATGACAAACATATCTTTCTTGGTCTCTACCTCCTCGCGTTCATCACTGGCATATATCTAGTGATCTTCGGCTCTTTCAACACAACCAACTCCACTGCATGGGTGGTCCTTACAGGTGCCATGGTCCTCCTCGCCCTCCCTCTCATCATCCCTGCCTCCTCCAGTTGTTCTCATGTGGACACACATGACCCTGAACCTACTGCTCAACTCAACCATGACGATTCAAAAAAACCACTTTTGCTCAATAATAACCACAGCACAGAGTCCAATGCCATGATCCAGAAAACAGTAGAACAGCCGATGCAGGATTGTTGCTTGGGGACAATACTGGAGAAGGGCCGCATGTTGGTTCTTTGTGAGGAGCATAGTGCAAAGAAGCTTATCCAGTGCATCGACTTCTGGCTATACTACATAGCCTACTTCTGTGGTGCCACTGTTGGGCTAGTGTACAGCAACAACTTGGGGCAAATTGCACAATCATTTCACCGGGAATCTCAGCTCACCATGCTTCTTGCCGTCTACTCCTCCTGTTCCTTCTTTGGCCGCCTTCTCTCTGCACTTCCAGACTTCCTTCACAGGAAGGTTTCATTTGCTCGGACAGGGTGGCTTGCAGCTGCGTTGGTTCCCATGCCAATGGCGTTCTTCCTAATGTGGAAATTGCATGATGTAAACACTCTGGTAGCAGGAACAGCGCTAATTGGCCTAAGCTCAGGCTTCATCTTTGCTGCAGCAGTGTCAGTGACCTCTGAGCTCTTTGGACCAAACAGCATTGGCATGAACCATAACATCCTCATCACCAACATCCCTCTTGGATCACTTCTCTATGGTCAGATTGCTGCCCTAGTGTATGATGCAAATGGCCTAAAGATGTCAGTAATAGAAAACCACAATGGCATGATTGACACTATGGTGGTTTGCATGGGGCCAAAGTGCTACTCAACCACATTCTTCGTGTGGGGTTGTATCACATTCCTAGGGTTGGTGTCAAGCATAATCCTATTCTTGAGAACAAGAACAGCTTACAGTGCTGCTAATGGTCAGCAAGTTATAAACACCACAGCCAAGTTTCGAGTTGACAGAACTCCTTGA More
Protein seq		MEQQQQGRRRGAGWRRWAVLVATVWIQAVTGTNFDFSAYSSALKASLGVSQEALNYLATASDLGKALGWSSGLALIHLPLPAVLLLSAASGLAAYALQYALILDYLHLPYPLVFLICLVAGCSICWFNTVCFVLCIRSFSSSNRPLALSLSISFNGLSAAFYTLFANALSPFSPSVYLLLNAIVPLVVSLVALPAILLCHPHDGHLHVVPKHDKHIFLGLYLLAFITGIYLVIFGSFNTTNSTAWVVLTGAMVLLALPLIIPASSSCSHVDTHDPEPTAQLNHDDSKKPLLLNNNHSTESNAMIQKTVEQPMQDCCLGTILEKGRMLVLCEEHSAKKLIQCIDFWLYYIAYFCGATVGLVYSNNLGQIAQSFHRESQLTMLLAVYSSCSFFGRLLSALPDFLHRKVSFARTGWLAAALVPMPMAFFLMWKLHDVNTLVAGTALIGLSSGFIFAAAVSVTSELFGPNSIGMNHNILITNIPLGSLLYGQIAALVYDANGLKMSVIENHNGMIDTMVVCMGPKCYSTTFFVWGCITFLGLVSSIILFLRTRTAYSAANGQQVINTTAKFRVDRTP
Function		Protein NUCLEAR FUSION DEFECTIVE 4 [UniProtKB/Swiss-Prot:F4I9E1]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsKYG_12g0000470	OsKYG_12g0000470.01	Chr12	391129	395608	+	NAM
CDS seq	ATGGAGCAGCAGCAGCAGGGGCGGAGGAGAGGCGCAGGATGGCGGCGTTGGGCGGTGCTGGTGGCGACGGTGTGGATACAGGCGGTGACGGGGACAAACTTCGACTTCTCGGCCTACTCGTCGGCGCTCAAGGCGTCCCTGGGTGTCTCGCAGGAGGCGCTCAACTACCTGGCCACCGCCTCCGACCTCGGCAAGGCGCTGGGCTGGTCGTCGGGCCTCGCCCTCATCCACCTCCCCCTCCCCGCCGTCCTCCTCCTCTCCGCCGCCTCCGGCCTCGCCGCATACGCCCTCCAGTACGCCCTCATCCTCGACTACCTCCACCTCCCCTACCCGCTCGTGTTCTTGATCTGCCTGGTAGCAGGTTGCAGTATCTGCTGGTTCAACACAGTATGCTTTGTGCTCTGCATTCGCAGTTTCTCCTCGAGCAATCGCCCACTGGCCCTCTCCCTCTCCATAAGTTTCAATGGGCTAAGTGCTGCATTCTACACCCTCTTTGCCAATGCCCTCTCCCCCTTTTCCCCATCTGTATACCTCCTTCTCAATGCAATTGTCCCTCTCGTTGTATCTCTTGTTGCACTGCCAGCAATACTCCTCTGCCACCCACATGACGGCCACCTCCACGTTGTGCCCAAGCATGACAAACATATCTTTCTTGGTCTCTACCTCCTCGCGTTCATCACTGGCATATATCTAGTGATCTTCGGCTCTTTCAACACAACCAACTCCACTGCATGGGTGGTCCTTACAGGTGCCATGGTCCTCCTCGCCCTCCCTCTCATCATCCCTGCCTCCTCCAGTTGTTCTCATGTGGACACACATGACCCTGAACCTACTGCTCAACTCAACCATGACGATTCAAAAAAACCACTTTTGCTCAATAATAACCACAGCACAGAGTCCAATGCCATGATCCAGAAAACAGTAGAACAGCCGATGCAGGATTGTTGCTTGGGGACAATACTGGAGAAGGGCCGCATGTTGGTTCTTTGTGAGGAGCATAGTGCAAAGAAGCTTATCCAGTGCATCGACTTCTGGCTATACTACATAGCCTACTTCTGTGGTGCCACTGTTGGGCTAGTGTACAGCAACAACTTGGGGCAAATTGCACAATCATTTCACCGGGAATCTCAGCTCACCATGCTTCTTGCCGTCTACTCCTCCTGTTCCTTCTTTGGCCGCCTTCTCTCTGCACTTCCAGACTTCCTTCACAGGAAGGTTTCATTTGCTCGGACAGGGTGGCTTGCAGCTGCGTTGGTTCCCATGCCAATGGCGTTCTTCCTAATGTGGAAATTGCATGATGTAAACACTCTGGTAGCAGGAACAGCGCTAATTGGCCTAAGCTCAGGCTTCATCTTTGCTGCAGCAGTGTCAGTGACCTCTGAGCTCTTTGGACCAAACAGCATTGGCATGAACCATAACATCCTCATCACCAACATCCCTCTTGGATCACTTCTCTATGGTCAGATTGCTGCCCTAGTGTATGATGCAAATGGCCTAAAGATGTCAGTAATAGAAAACCACAATGGCATGATTGACACTATGGTGGTTTGCATGGGGCCAAAGTGCTACTCAACCACATTCTTCGTGTGGGGTTGTATCACATTCCTAGGGTTGGTGTCAAGCATAATCCTATTCTTGAGAACAAGAACAGCTTACAGTGCTGCTAATGGTCAGCAAGTTATAAACACCACAGCCAAGTTTCGAGTTGACAGAACTCCTTGA More
Protein seq	MEQQQQGRRRGAGWRRWAVLVATVWIQAVTGTNFDFSAYSSALKASLGVSQEALNYLATASDLGKALGWSSGLALIHLPLPAVLLLSAASGLAAYALQYALILDYLHLPYPLVFLICLVAGCSICWFNTVCFVLCIRSFSSSNRPLALSLSISFNGLSAAFYTLFANALSPFSPSVYLLLNAIVPLVVSLVALPAILLCHPHDGHLHVVPKHDKHIFLGLYLLAFITGIYLVIFGSFNTTNSTAWVVLTGAMVLLALPLIIPASSSCSHVDTHDPEPTAQLNHDDSKKPLLLNNNHSTESNAMIQKTVEQPMQDCCLGTILEKGRMLVLCEEHSAKKLIQCIDFWLYYIAYFCGATVGLVYSNNLGQIAQSFHRESQLTMLLAVYSSCSFFGRLLSALPDFLHRKVSFARTGWLAAALVPMPMAFFLMWKLHDVNTLVAGTALIGLSSGFIFAAAVSVTSELFGPNSIGMNHNILITNIPLGSLLYGQIAALVYDANGLKMSVIENHNGMIDTMVVCMGPKCYSTTFFVWGCITFLGLVSSIILFLRTRTAYSAANGQQVINTTAKFRVDRTP More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsKYG_12g0000470	OsKYG_12g0000470.02	Chr12	391067	392717	+	IsoSeq
CDS seq	ATGTATATTAAATCGATATCTGAGAGACTCAATGCATCCATATCTCTCCGTCGCCGCGCCCACCTCTCGTTTTTCCTTGGCTTACAATTTTTTGGAATCGTCTGCTGCAATCGATTACGATTTACCAATATACTCCTACTGTGTATTACTCCCTTCGTA
Protein seq	MYIKSISERLNASISLRRRAHLSFFLGLQFFGIVCCNRLRFTNILLLCITPFV

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	1.121898	0.0	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_12g0106500	SBH	1.362041	2.335844	0.000000
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os12g01570	SBH	1.778235	1.755238	0.119757
Nipponbare \| IRGSP 1.0 \| RAP-db	Os12g0106500	SBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_12g0000350	SBH	0.272652	1.256769	1.678289
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_12g0000530	SBH	0.721760	0.000000	1.028065
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_12g0000500	SBH	0.572520	2.659231	1.440126
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_12g0000370	SBH	0.111275	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_12g0000470	RBH	6.525149	4.809294	4.907085
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_12G0005300	RBH	2.7424815	1.8662285	2.1333545
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_12g0000430	RBH	0.141299	0.000000	0.644152
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_12G0005400	SBH	3.810845	1.2666475	4.4554885
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_12g0000360	SBH	0.374808	0.223949	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_11g0000500	RBH	0.895933	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_12g0000470	RBH	5.453961	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_12g0000470	SBH	0.400570	0.0	0.355909
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_11g0000510	SBH	0.362789	0.927350	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_11G000520	SBH	0.454781	0.352679	1.694811
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_12g0000510	RBH	2.482427	0.0	0.266991

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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