Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_12g0000500 | OGI:12000830 | 8/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr12:382187-386332 | ||||||||
| Gene Symbol | MFS7, OsMFS7 | ||||||||||
| DNA seq | agccggccggaggaggaattaagcaacaagctaagctaagctagccagaggaaacaacaaggaaaaggagagatcgatcgagcgatggagcggtcgacgacgacgacgacggagcagcagcagcagcagcagcaggggcggaggagaggcgcaggatggcggcgttgggcggtgctggtggcgacggtgtggatacaggcggtgacggggacaaacttcgacttctcggcctactcgtcggcgctcaaggcgtccctgggtgtctcgcaggaggcgctcaactacctggccaccgcctccgacctgggcaaggcgctgggctggtcgtcgggcctcgccctcatccacctccccctccccgccgtcctcctcctctccgccgcctccggcctcgccgcatacgccctccagtacgccctcatcctcgactacctccacctcccctacccgctcgtacgtacacacttcgtcttctctctctctcttttttttttcttttctttattatcgatcgcctattcgctttgttttaattaagcttgattattcaattagctttctagttacgagtacctataaggtgtccttccatcatgattatatacaagaaatataatggagatcttagccaactatgctgattgatcgtagtagtacgtggatgtatagaggccaaggccggccagcagggtttggagattcgagatcgatagtactagtagtagtagtaatgaagctactgatctgagtggccacaaataagttgcaatcatatatcacatttacggacgcaattctaacgtcccattcaactgctactgaattatatgtatattaaatcgatatctgagagactcaatgcatccatatctctccgtcgccgcgcccacctctcgtttttccttggcttacaattttttggaatcgtctgctgcaatcgattaccatttaccaatatactcctactgtgtattataatattgcccatgttatacatagtcaatcttatatactgtgtatctgcagcaataagttagtttctgccttaaacatgtatctggattaattgattacttcaatcaactcaacgtatattttgggatggagggaataacaaacaactcctaaccaacaacacccgcatatgccatcataaaccacgatcaaaagtgtttatttaattgattctttctcatctcccttttaattttcataaatgctagctgcttgcgcctatttcaaaagatgacgagccaaaaataaaaatcccacacacgatcgaagaagaaacaaacaaatggttctcaagtctcagcttaaaatggtccacaaaagtataaatagctaaaactccatcgataagttcacgcttcactcatgtaaaactcacgaacacactaacgctacggcacaatgtaaaactacaatccattctgttactctaaacatccaggtagctctgtgtcctgaattacagttaataaaactcgctatcaaaatacccatgccagtgaatcctgcattattggcatcatcatgaattaatgccttcctgcccaactatcagtttcagcttcaatccaactttgactagcagatgaacaagctaccattctccccccaaagaattcttcttacagaaggaccatcactacactgtctccccttcttttggtttctttctgactggtaggtgttgatgcaacttgccaagtcacctccttccttcaacttctccatcataaacagtagcaagaaagaagcagcacatcctttttatcagttacagtaaccaaatagtatgaacgtattcctgattttaggagtccataaccaatcctctgctaccataacatactttgaattgcataataagagttgttacactgcatagctcaaagacataattagccgtcctggttactcctctgaaactaaaacagcatgcctagacaaggtcagcaagttacctattatcagaccggctgcagttttccttttctgaaaccaaacggacatgaggcctttaacaaagcaaggtcttcaaccgccaaactgaaggcactccctctaaaacagaagccacatcatcagcctagaacaaaagtcctgacaaagaaaagcattgctagcgcgtcagccataaatgtgatcacaactacaacatcacacatgcctgttgcattgcatttttcagtactcagaacagcatcctcaacctgctcatgcttcacatattcttcctttccttgggcagatcttttgatgtcagtaggaagtacgacatcctttttacagatgaggaagcataacatcctgataaatacaaataccaattagatcacagaattattaccgaagatcatgccattacagtttttccgtaaccgtacataacactctcttctaaacgctactcgaagcaccaaatctggatttatcactttgttgtatgcattacatattagtatacttcatgtcttgcatacattaaaccaggatgtatgacctgatcgttggtacataataacttactggtaggcatgttgtcctttaactctcatcaacagtattaaaccagcgatgtatggacatgctttttaactgtttgtggccagtaaaactgagctaaccaactgatggactaatttggatcatgtattactatgcaggtgttcttgatctgcctggtagcaggttgcagtatctgctggttcaacacagtatgctttgtgctctgcattcgcagtttctcctcgagcaatcgcccactggccctctccctctccataagtttcaatgggctaagtgctgcattctacaccctctttgccaatgccctctcccccttttccccatctgtatacctccttctcaatgcaattgtccctctcgttgtatctcttgttgcactgccagcaatactcctctgccacccacatgacggccacctccacgttgtgcccaagcatgacaaacatatctttcttggtctctacctcctcgcgttcatcactggcatatatctagtgatcttcggctctttcaacacaaccaactccactgcatgggtggtccttacaggtgccatggtcctcctcgccctccctctcatcatccctgcctcctccagttgttctcatgtggacacacatgaccctgaacctactgctcaactcaaccatgacgattcaaaaaaaccacttttgctcaataataaccacagcacagagtccaatgccatgatccagaaaacagtggaacagccgatgcaggattgttgcttggggacaatactggagaagggacgcatgttggttctttgtgaggagcatagtgcaaagaagcttatccagtgcgtcgacttctggctatactacatagcctacttctgtggtgccactgttgggctagtgtacagcaacaacttggggcaaattgcacaatcatttcaccgggaatctcagctcaccatgcttcttgccgtctactcctcctgttccttctttggccgccttctctctgcacttccagacttccttcacaggtccctatgtcttgttctatatacttgcatgcatcttaattctcactagctggtccataaactaactatataatgaatttgcatgcaggaaggtttcatttgctcggacagggtggcttgcagctgcgttggttcccatgccaatggcgttcttcctaatgtggaaattgcatgatgtaaacactctggtagcaggaacagcgctaattggcctaagctcaggcttcatctttgctgcagcagtgtcagtgacctctgagctctttggaccaaacagcattggcatgaaccataacatcctcatcaccaacatccctcttggatcacttctctatggtcagattgctgccctagtgtatgatgcaaatggcctaaagatgtcagtaatagacaaccacaatggcatgattgacactatggtggtttgcatggggccaaagtgctactcaaccacattcttcgtgtggggttgtatcacattcctagggttggtgtcaagcataatcctattcttgagaacaagaacagcttacagtgctgctaatggtcagcaagttataaacaccacagccaagtttcgagttgacagaactccttga
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| CDS seq | atggagcggtcgacgacgacgacgacggagcagcagcagcagcagcagcaggggcggaggagaggcgcaggatggcggcgttgggcggtgctggtggcgacggtgtggatacaggcggtgacggggacaaacttcgacttctcggcctactcgtcggcgctcaaggcgtccctgggtgtctcgcaggaggcgctcaactacctggccaccgcctccgacctgggcaaggcgctgggctggtcgtcgggcctcgccctcatccacctccccctccccgccgtcctcctcctctccgccgcctccggcctcgccgcatacgccctccagtacgccctcatcctcgactacctccacctcccctacccgctcgtgttcttgatctgcctggtagcaggttgcagtatctgctggttcaacacagtatgctttgtgctctgcattcgcagtttctcctcgagcaatcgcccactggccctctccctctccataagtttcaatgggctaagtgctgcattctacaccctctttgccaatgccctctcccccttttccccatctgtatacctccttctcaatgcaattgtccctctcgttgtatctcttgttgcactgccagcaatactcctctgccacccacatgacggccacctccacgttgtgcccaagcatgacaaacatatctttcttggtctctacctcctcgcgttcatcactggcatatatctagtgatcttcggctctttcaacacaaccaactccactgcatgggtggtccttacaggtgccatggtcctcctcgccctccctctcatcatccctgcctcctccagttgttctcatgtggacacacatgaccctgaacctactgctcaactcaaccatgacgattcaaaaaaaccacttttgctcaataataaccacagcacagagtccaatgccatgatccagaaaacagtggaacagccgatgcaggattgttgcttggggacaatactggagaagggacgcatgttggttctttgtgaggagcatagtgcaaagaagcttatccagtgcgtcgacttctggctatactacatagcctacttctgtggtgccactgttgggctagtgtacagcaacaacttggggcaaattgcacaatcatttcaccgggaatctcagctcaccatgcttcttgccgtctactcctcctgttccttctttggccgccttctctctgcacttccagacttccttcacaggaaggtttcatttgctcggacagggtggcttgcagctgcgttggttcccatgccaatggcgttcttcctaatgtggaaattgcatgatgtaaacactctggtagcaggaacagcgctaattggcctaagctcaggcttcatctttgctgcagcagtgtcagtgacctctgagctctttggaccaaacagcattggcatgaaccataacatcctcatcaccaacatccctcttggatcacttctctatggtcagattgctgccctagtgtatgatgcaaatggcctaaagatgtcagtaatagacaaccacaatggcatgattgacactatggtggtttgcatggggccaaagtgctactcaaccacattcttcgtgtggggttgtatcacattcctagggttggtgtcaagcataatcctattcttgagaacaagaacagcttacagtgctgctaatggtcagcaagttataaacaccacagccaagtttcgagttgacagaactccttga
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| Protein seq | MERSTTTTTEQQQQQQQGRRRGAGWRRWAVLVATVWIQAVTGTNFDFSAYSSALKASLGVSQEALNYLATASDLGKALGWSSGLALIHLPLPAVLLLSAASGLAAYALQYALILDYLHLPYPLVFLICLVAGCSICWFNTVCFVLCIRSFSSSNRPLALSLSISFNGLSAAFYTLFANALSPFSPSVYLLLNAIVPLVVSLVALPAILLCHPHDGHLHVVPKHDKHIFLGLYLLAFITGIYLVIFGSFNTTNSTAWVVLTGAMVLLALPLIIPASSSCSHVDTHDPEPTAQLNHDDSKKPLLLNNNHSTESNAMIQKTVEQPMQDCCLGTILEKGRMLVLCEEHSAKKLIQCVDFWLYYIAYFCGATVGLVYSNNLGQIAQSFHRESQLTMLLAVYSSCSFFGRLLSALPDFLHRKVSFARTGWLAAALVPMPMAFFLMWKLHDVNTLVAGTALIGLSSGFIFAAAVSVTSELFGPNSIGMNHNILITNIPLGSLLYGQIAALVYDANGLKMSVIDNHNGMIDTMVVCMGPKCYSTTFFVWGCITFLGLVSSIILFLRTRTAYSAANGQQVINTTAKFRVDRTP |
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| Function | Protein NUCLEAR FUSION DEFECTIVE 4 [UniProtKB/Swiss-Prot:F4I9E1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_12g0000500 | OsCMeo_12g0000500.01 | Chr12 | 382187 | 386332 | + | NAM | ||
| CDS seq | atggagcggtcgacgacgacgacgacggagcagcagcagcagcagcagcaggggcggaggagaggcgcaggatggcggcgttgggcggtgctggtggcgacggtgtggatacaggcggtgacggggacaaacttcgacttctcggcctactcgtcggcgctcaaggcgtccctgggtgtctcgcaggaggcgctcaactacctggccaccgcctccgacctgggcaaggcgctgggctggtcgtcgggcctcgccctcatccacctccccctccccgccgtcctcctcctctccgccgcctccggcctcgccgcatacgccctccagtacgccctcatcctcgactacctccacctcccctacccgctcgtgttcttgatctgcctggtagcaggttgcagtatctgctggttcaacacagtatgctttgtgctctgcattcgcagtttctcctcgagcaatcgcccactggccctctccctctccataagtttcaatgggctaagtgctgcattctacaccctctttgccaatgccctctcccccttttccccatctgtatacctccttctcaatgcaattgtccctctcgttgtatctcttgttgcactgccagcaatactcctctgccacccacatgacggccacctccacgttgtgcccaagcatgacaaacatatctttcttggtctctacctcctcgcgttcatcactggcatatatctagtgatcttcggctctttcaacacaaccaactccactgcatgggtggtccttacaggtgccatggtcctcctcgccctccctctcatcatccctgcctcctccagttgttctcatgtggacacacatgaccctgaacctactgctcaactcaaccatgacgattcaaaaaaaccacttttgctcaataataaccacagcacagagtccaatgccatgatccagaaaacagtggaacagccgatgcaggattgttgcttggggacaatactggagaagggacgcatgttggttctttgtgaggagcatagtgcaaagaagcttatccagtgcgtcgacttctggctatactacatagcctacttctgtggtgccactgttgggctagtgtacagcaacaacttggggcaaattgcacaatcatttcaccgggaatctcagctcaccatgcttcttgccgtctactcctcctgttccttctttggccgccttctctctgcacttccagacttccttcacaggaaggtttcatttgctcggacagggtggcttgcagctgcgttggttcccatgccaatggcgttcttcctaatgtggaaattgcatgatgtaaacactctggtagcaggaacagcgctaattggcctaagctcaggcttcatctttgctgcagcagtgtcagtgacctctgagctctttggaccaaacagcattggcatgaaccataacatcctcatcaccaacatccctcttggatcacttctctatggtcagattgctgccctagtgtatgatgcaaatggcctaaagatgtcagtaatagacaaccacaatggcatgattgacactatggtggtttgcatggggccaaagtgctactcaaccacattcttcgtgtggggttgtatcacattcctagggttggtgtcaagcataatcctattcttgagaacaagaacagcttacagtgctgctaatggtcagcaagttataaacaccacagccaagtttcgagttgacagaactccttga
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| Protein seq | MERSTTTTTEQQQQQQQGRRRGAGWRRWAVLVATVWIQAVTGTNFDFSAYSSALKASLGVSQEALNYLATASDLGKALGWSSGLALIHLPLPAVLLLSAASGLAAYALQYALILDYLHLPYPLVFLICLVAGCSICWFNTVCFVLCIRSFSSSNRPLALSLSISFNGLSAAFYTLFANALSPFSPSVYLLLNAIVPLVVSLVALPAILLCHPHDGHLHVVPKHDKHIFLGLYLLAFITGIYLVIFGSFNTTNSTAWVVLTGAMVLLALPLIIPASSSCSHVDTHDPEPTAQLNHDDSKKPLLLNNNHSTESNAMIQKTVEQPMQDCCLGTILEKGRMLVLCEEHSAKKLIQCVDFWLYYIAYFCGATVGLVYSNNLGQIAQSFHRESQLTMLLAVYSSCSFFGRLLSALPDFLHRKVSFARTGWLAAALVPMPMAFFLMWKLHDVNTLVAGTALIGLSSGFIFAAAVSVTSELFGPNSIGMNHNILITNIPLGSLLYGQIAALVYDANGLKMSVIDNHNGMIDTMVVCMGPKCYSTTFFVWGCITFLGLVSSIILFLRTRTAYSAANGQQVINTTAKFRVDRTP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.572520 | 2.659231 | 1.440126 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0106500 | RBH | 1.362041 | 2.335844 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01570 | RBH | 1.778235 | 1.755238 | 0.119757 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0106500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000350 | RBH | 0.272652 | 1.256769 | 1.678289 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000530 | RBH | 0.721760 | 0.000000 | 1.028065 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000520 | RBH | 0.485629 | 1.074955 | 2.890931 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000370 | RBH | 0.111275 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000500 | RBH | 9.074398 | 0.000000 | 4.921950 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0006400 | SBH | 1.5046565 | 1.7376225 | 0.924995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000500 | RBH | 0.185226 | 0.118399 | 0.637811 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0005400 | RBH | 3.810845 | 1.2666475 | 4.4554885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000360 | RBH | 0.374808 | 0.223949 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000500 | RBH | 0.895933 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000510 | RBH | 15.435676 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000470 | RBH | 0.400570 | 0.0 | 0.355909 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000510 | RBH | 0.362789 | 0.927350 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000520 | RBH | 0.454781 | 0.352679 | 1.694811 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000510 | RBH | 2.124680 | 3.542261 | 2.666592 |
