Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKYG_11g0024570 | OGI:11082190 | 8/16 | KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | Chr11:31731006-31731732 | ||||||||
| Gene Symbol | RYMV3, OsRYMV3 | ||||||||||
| DNA seq | ATGCCAAAGGTTCGGAGAGTTGAGTTCAGTTTCAGCCTGCGCGATTTCAGCTCTAGGGCTGATTTTGGCTTCGGATTGGAGAACCTGATCTCACTTGAGCATGTCACCATCCGTCTCCACGACAAGGTGCATAGTGTGGAAGCCGCACTGAGGCACTTAACCAAGAAACACCCCAGACGTCCCACAATTACACTGATAAGGGACGGCGAAGAACCAACAGGTTCTTACGGCCTTACTCTCATTTAGCTAATTAATTAATGCATGCAAAGAATTCTACTACCGAATTGCGCAATTCCCATCCCCGTCCGTAGCTTGCTTCATAATCTAATAAGTATAAACTAATTAATATTAATTAATTTCTTATCTAACTTTCCAGATACTGCGGCTTCCAACGACACAAGAACACAAGAAGAGTTGGCGGAAATGGAAGCTAAGCAATTGGAAGAGGTACTTGCAATTTAAACACATTGTTCAGATTCTTTTCTTTTGTTTTTCTTTACCGTTTTATCTATGTACTTATTTATTGCACGATTTTTTGAATATTTCATTCATGTACGTATTCTCTTGTGAATTAATTCCTACCCAGTTGTATATAGTCTTTTGGCCCTCATTTTACTAAGTTATTTTGCAGAGGAGGGATAAATTCATTCAGGAACTTCATGAGGAGAATTTGTTGTTGGACGACTTGCAAGCTCAGCTCATGAAGATATCCGAGCATAAGAGATAG
More
|
||||||||||
| CDS seq | ATGCCAAAGGTTCGGAGAGTTGAGTTCAGTTTCAGCCTGCGCGATTTCAGCTCTAGGGCTGATTTTGGCTTCGGATTGGAGAACCTGATCTCACTTGAGCATGTCACCATCCGTCTCCACGACAAGGTGCATAGTGTGGAAGCCGCACTGAGGCACTTAACCAAGAAACACCCCAGACGTCCCACAATTACACTGATAAGGGACGGCGAAGAACCAACAGATACTGCGGCTTCCAACGACACAAGAACACAAGAAGAGTTGGCGGAAATGGAAGCTAAGCAATTGGAAGAGAGGAGGGATAAATTCATTCAGGAACTTCATGAGGAGAATTTGTTGTTGGACGACTTGCAAGCTCAGCTCATGAAGATATCCGAGCATAAGAGATAG |
||||||||||
| Protein seq | MPKVRRVEFSFSLRDFSSRADFGFGLENLISLEHVTIRLHDKVHSVEAALRHLTKKHPRRPTITLIRDGEEPTDTAASNDTRTQEELAEMEAKQLEERRDKFIQELHEENLLLDDLQAQLMKISEHKR |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_11g0024570 | OsKYG_11g0024570.01 | Chr11 | 31731006 | 31731732 | + | NAM | ||
| CDS seq | ATGCCAAAGGTTCGGAGAGTTGAGTTCAGTTTCAGCCTGCGCGATTTCAGCTCTAGGGCTGATTTTGGCTTCGGATTGGAGAACCTGATCTCACTTGAGCATGTCACCATCCGTCTCCACGACAAGGTGCATAGTGTGGAAGCCGCACTGAGGCACTTAACCAAGAAACACCCCAGACGTCCCACAATTACACTGATAAGGGACGGCGAAGAACCAACAGATACTGCGGCTTCCAACGACACAAGAACACAAGAAGAGTTGGCGGAAATGGAAGCTAAGCAATTGGAAGAGAGGAGGGATAAATTCATTCAGGAACTTCATGAGGAGAATTTGTTGTTGGACGACTTGCAAGCTCAGCTCATGAAGATATCCGAGCATAAGAGATAG
More
|
|||||||
| Protein seq | MPKVRRVEFSFSLRDFSSRADFGFGLENLISLEHVTIRLHDKVHSVEAALRHLTKKHPRRPTITLIRDGEEPTDTAASNDTRTQEELAEMEAKQLEERRDKFIQELHEENLLLDDLQAQLMKISEHKR |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g46140 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024470 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024330 | SBH | 0.0 | 1.243308 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022380 | SBH | 0.469252 | 1.244121 | 1.933624 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0019120 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0442100 | SBH | 0.0366395 | 3.949619 | 0.2105595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023220 | SBH | 0.185120 | 0.672409 | 0.521468 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0414300 | SBH | 1.5685855 | 6.445136 | 1.78354 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024520 | SBH | 0.0 | 0.050314 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022590 | SBH | 0.0 | 1.604007 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018790 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0018930 | SBH | 0.0 | 0.539979 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022420 | SBH | 0.0 | 1.836865 | 0.336344 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019390 | SBH | 0.0 | 0.0 | 0.0 |
