Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKYG_01g0012220 | OGI:01030280 | 1/16 | KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | Chr01:10160361-10164401 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CATGGCATCTCAACAGTCAACAATGCAAAAGTAAAGAGAACTTTTGAACCAGTCCCTTATAATAGGGCAACTAAATCAAAACTGGCAATAAATATCAAGACTTAGTTCATCAAAGCAACCATACATTACCAGGTATTATCAGTCAAGAGGGCCTCAGGCTTGCGATAAATATTATCTACACTACAAGGGTTGAGCTGAAGCCTAGTCTTTACTTGCAGTATCTCGTACAAGCAAAGCAACCAAGCTTGCACATTTACCAGGTACTCCGATAAAGCTAATTTGCTATTGATCTATATCACACGAGCGACAGGGACTGATTGGCACGTTCAGCAGTTTGTGTCATATGTTGCAAGCCCTTGCAACTCGGGCCCCTCCAACCTTGGATTTTTGTCAAAGCTGCAGAGAGAAAAACAATGGGTTAGAAACAATGCAAACTGGGGCGATGAGTTCTGCATATGCCAAGTGACGACAATTAATGGAAGTCCACAATACATAGAAAACAAAATATGGCACTTAGTGAGTCATTTGTTGTGTCGATTAATTCTGATTCAGCAATTAGCGTATATGGAAAAGAAATAAAAAAATAAACTCTGGATCTATGGCATACCACAGAAAAATGAGTAGCTCTTAGAAGATAAAGAATTCAAGAAAATGAGTAGAGCACTCTTTTTTATCTGGTACATAGATATGTGCTACATAACAACCAAATTAGTATTATGGCAAAAGATGAGCTGCACTGTCAAATCAGAAAAACTTAGCCGAGGTTCACTAGTAATCAATTTTATGACTTCGGGTGTTTTGGTTTTTGGCTGATGGAATAGTGTGGCTAATGTCTCAAGTCCTCTCATTTATACAGAAGCACAACATTGGATGTGCAAAAGCAAAAAACAAGTCAACATAATTGTAAAATAAATTGGTAACAAGGCTTTTAGATCTTACTTGTTCAGGGGTATATGCTCAAAAGGCCCGCTAGTAGGAATCGTGCCGCAAAGATCATTGTTCGAGACATCTCTGGAAGCAAGAATAGATAGACAAATAAAAGATCATCATTAATATGTACAGAACATAAAAATTATGTGAAACAGCATTGTTAACTGAGCACTTACATCACTTTGAGACTAGATATTTTTGCCAGATCCCTCGGGATTGGACCGTTTAAACTGTTGTCATTAAGCCGCCTAAAGAAACAAAAATAAAAGGATTAACATAGCGTAAAAGTACCAGTGTACCATAGCATAAAAAGAATTAAAAAGAAAGTGATGCTTGCATATGTGGCAAAATGGTGCAAAAGTGGATATATGTTAACTAAAGTATAGTTGCTTAAAAGAATAAGTACAGCTAATCACAAGAATAAGTATAGTTACTCACAAGAATACTAAGGAACTCAGCTTGCCAAGTTCTTTCGGTATGGTTCCAGTAATGTTGTTGTTATACAGATCCAAGCTAATAAGGTTCTTCAGACTCCCGAGCTCAGCTGGGATAGTGCCCTGAATATTGTTTTTGTACAGCTCTCTGTAACAATTTTTCAAAAACTAGTTAGAGCACTAACATGAATGTCAAGCTCAATTGCAGTAAAATAGCATCGGAAATTAAGGATGACCAAAGCATATTTTATAAATCAAATGGATACAAGACTTAATGATGCAGTCTTGGCACAAATCACGAGACTGAAAACAAACAGTTCGTTGGAAAAACTGTATAATATATTGTCTTATAGTGGACCATGTTCAATGCTGGTGTTTATTTTGCATATGAACAGCTCATATCAGATTCATATGTTCTGATATAGCTGAGATTCCCAGCATTTAGATTTAGTTCATCATTTTACTTAAAAAGAATCATCTCTCTTGCTCATTAAAATAACACTCCGAAAATGCTCTAGTTTCACTCCACTAGGAAACGGAAGCTGCAATCACATAACAGGAAGTGAGAAGATCAAAACAGTAAGTCAATAATTACGTGCCACAAGGAACTGTTGAAAACCACAAATTGTGTTCTAGATTTCTGGTAATGTGAGAGTTTCCATTTTTCCCCCAGTTTTTTCACCATTTGCCATGATATTTGCAGTTTAATTCATGAAGCCTAGCTGTTTAAATGACTTTACAAATCCAGCGCTGAAGCTTTATGAGTTCAAAAAAGAAGTGATGAAAGAAAGGAAGCTAGGTCTAACATAGTATTCCAGCTGTAACTTCTACATGACAAGCAGTTGGCAGTGTTGCTGAATGCTGACCATATGTAATGCAAACTTAATAGGACATGTGAGTTTTTAGCTTATCAGTGTCGGTGATCATTGCCATCAGAGAACCTTTGCTGAATGAACTCTACATTTTAACACTTCAGAAAATAAAGTGCATCAATATGTAGAAAGACTTACAGATATTGGAGATGCTCAAGGTGTCCCAGTTCAGGAGCAAGATGGCCTGACAAATTTGAGTTACCCAAGTCTCTACAAGATACAAAATTGTTAGAAAGTATCAGAAAAATGTTAAGATGGACAAAGACAATGAATTGAACCAAGAACATAGGTAACCATAACAAAATATATCTCTTGTATGGTAATGGCATCATGGTGAACGCTGCATCAAAAGAAACCACTTCGATGAATCAATTTCTTTCCTTCAGCAAGCAAACATATATAATAGATACCCTAAGTCCAAACCAATGGAAGGATGCAAGTGGACCGGTCCGCAAGCCCCCATATAGGCCATTTTTGCAGGCCAACCTATGGGTCAGCCCACGAAAATGTCCCATACGCAGGCTCGTGAGTCAGCCTGCTTGCATCCCTACAATGGAGTACATAAAAGACTACAAAAATCTAGTCGTACAGTGAAAGCAGTAAGACTCTATCTAGGGTGGTTGATTGCTAAGTACTCCCTCGTTCACATTTGACCAGCGCATTCCATCTTGACACCGAGACCAAGGGGGTATTTTTCCATTTAATCCCCATGATAATATCTGTATTAATTGGCTACATACACATCCTCGCTACATGCGGATTGGATACACAACTTTTTTTTTCTTTTTTTAAGCTGACCATTAGCAGGCAATGCATTGTTCCCGAGATGCATGGCGTGCTAGCGGAGTAACTCACGTGCGAACCGTGCAGCCAATGGGTAACGCGACAATCATCATTGGATAATTGCTTTTTGGTTTTACGTGGATCAATTGCGCACATAGAGAATATAGCTTGCATCAGCGATATTTCCATGCAGGATCAAGAAGTACTCCCCGGTTCCATTTATAGCTATCATCAGCATAATTATGCAAATACATGATGACATAGCTAACGTGAAAAGTATTGATATCAAACTACTACATGCAAGTAATTAGTAGATATTATATAGTGAGTAGCTTTACTGTTGCTACAAACTAACTAGTAACATTTACTATTACAGACAAACTGTATTGCAACGATGATTCCACATGGGCAGAACAAAATCTTTTAAAAAAAATTAAATGACAATCTACAAATCACGTTCTTTGCCAGTAGATCACGGTCTCACCAGAACCGAATGAACAACTAAATCACCATATCCCTTTCACCAACTGGTGTCAATTAACTCACAGATCCATTTGAAACTGTATTTAAGCATTAGCGGCCTAGCACAAAGCCCTCGCATTTCCAATACTACGGCAGAGGTCAGTACACCGAAGCAAACAAAAGCAGTACACAACGGAGGGAGCAAAACCGGCCGGTAGTAGCCAGCTCAGTCGGCGAGGCGGCGGCGGCGGTGGGGGGGGGGGGAGGTGGACTCACAGGCGGGTGACGCGGCCGGCGCGGTCGCACAGGTGACGTGGAACCAGGTGCAGGGGTTGACGAGGGTCGGGTCCCAGCTCTGGAGCACGCCCCGGGGGTCCGCCAGCGCGCGCCGCAGCGCGTACAGCGCGTCCCCCTCCGAGTTGGACGCCGACGCCACGGCCGCCGCCAGCAAAACCGCCGCGAGCGCCGGGGACCAGGCCGCCGCCATCGCCATCGAAGCTTAGCTAGGGTTCCGGATGCGGGCGAGGAGGAGTGGGGAAATGGGCGGAGTGAGTGAAGGT
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| CDS seq | ATGGCGATGGCGGCGGCCTGGTCCCCGGCGCTCGCGGCGGTTTTGCTGGCGGCGGCCGTGGCGTCGGCGTCCAACTCGGAGGGGGACGCGCTGTACGCGCTGCGGCGCGCGCTGGCGGACCCCCGGGGCGTGCTCCAGAGCTGGGACCCGACCCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGTGCGACCGCGCCGGCCGCGTCACCCGCCTCGTTCACCATGATGCCATTACCATACAAGAGATATATTTTGTTATGGTTACCTATGTTCTTGGTTCAATTCATTGTCTTTGTCCATCTTAACATTTTTCTGATACTTTCTAACAATTTTGTATCTTGTAGAGACTTGGGTAACTCAAATTTGTCAGGCCATCTTGCTCCTGAACTGGGACACCTTGAGCATCTCCAATATCTAGAGCTGTACAAAAACAATATTCAGGGCACTATCCCAGCTGAGCTCGGGAGTCTGAAGAACCTTATTAGCTTGGATCTGTATAACAACAACATTACTGGAACCATACCGAAAGAACTTGGCAAGCTGAGTTCCTTAGTATTCTTGCGGCTTAATGACAACAGTTTAAACGGTCCAATCCCGAGGGATCTGGCAAAAATATCTAGTCTCAAAGTGATAGATGTCTCGAACAATGATCTTTGCGGCACGATTCCTACTAGCGGGCCTTTTGAGCATATACCCCTGAACAACTTTGACAAAAATCCAAGGTTGGAGGGGCCCGAGTTGCAAGGGCTTGCAACATATGACACAAACTGCTGA
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| Protein seq | MAMAAAWSPALAAVLLAAAVASASNSEGDALYALRRALADPRGVLQSWDPTLVNPCTWFHVTCATAPAASPASFTMMPLPYKRYILLWLPMFLVQFIVFVHLNIFLILSNNFVSCRDLGNSNLSGHLAPELGHLEHLQYLELYKNNIQGTIPAELGSLKNLISLDLYNNNITGTIPKELGKLSSLVFLRLNDNSLNGPIPRDLAKISSLKVIDVSNNDLCGTIPTSGPFEHIPLNNFDKNPRLEGPELQGLATYDTNC |
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| Function | Leucine-rich repeat protein 1 [UniProtKB/Swiss-Prot:Q5VQP7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_01g0012220 | OsKYG_01g0012220.02 | Chr01 | 10160361 | 10164401 | - | NAM | ||
| CDS seq | ATGGCGATGGCGGCGGCCTGGTCCCCGGCGCTCGCGGCGGTTTTGCTGGCGGCGGCCGTGGCGTCGGCGTCCAACTCGGAGGGGGACGCGCTGTACGCGCTGCGGCGCGCGCTGGCGGACCCCCGGGGCGTGCTCCAGAGCTGGGACCCGACCCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGTGCGACCGCGCCGGCCGCGTCACCCGCCTCGTTCACCATGATGCCATTACCATACAAGAGATATATTTTGTTATGGTTACCTATGTTCTTGGTTCAATTCATTGTCTTTGTCCATCTTAACATTTTTCTGATACTTTCTAACAATTTTGTATCTTGTAGAGACTTGGGTAACTCAAATTTGTCAGGCCATCTTGCTCCTGAACTGGGACACCTTGAGCATCTCCAATATCTAGAGCTGTACAAAAACAATATTCAGGGCACTATCCCAGCTGAGCTCGGGAGTCTGAAGAACCTTATTAGCTTGGATCTGTATAACAACAACATTACTGGAACCATACCGAAAGAACTTGGCAAGCTGAGTTCCTTAGTATTCTTGCGGCTTAATGACAACAGTTTAAACGGTCCAATCCCGAGGGATCTGGCAAAAATATCTAGTCTCAAAGTGATAGATGTCTCGAACAATGATCTTTGCGGCACGATTCCTACTAGCGGGCCTTTTGAGCATATACCCCTGAACAACTTTGACAAAAATCCAAGGTTGGAGGGGCCCGAGTTGCAAGGGCTTGCAACATATGACACAAACTGCTGA
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| Protein seq | MAMAAAWSPALAAVLLAAAVASASNSEGDALYALRRALADPRGVLQSWDPTLVNPCTWFHVTCATAPAASPASFTMMPLPYKRYILLWLPMFLVQFIVFVHLNIFLILSNNFVSCRDLGNSNLSGHLAPELGHLEHLQYLELYKNNIQGTIPAELGSLKNLISLDLYNNNITGTIPKELGKLSSLVFLRLNDNSLNGPIPRDLAKISSLKVIDVSNNDLCGTIPTSGPFEHIPLNNFDKNPRLEGPELQGLATYDTNC
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_01g0012220 | OsKYG_01g0012220.01 | Chr01 | 10160361 | 10164401 | - | NAM | ||
| CDS seq | ATGGCGATGGCGGCGGCCTGGTCCCCGGCGCTCGCGGCGGTTTTGCTGGCGGCGGCCGTGGCGTCGGCGTCCAACTCGGAGGGGGACGCGCTGTACGCGCTGCGGCGCGCGCTGGCGGACCCCCGGGGCGTGCTCCAGAGCTGGGACCCGACCCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGTGCGACCGCGCCGGCCGCGTCACCCGCCTAG
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| Protein seq | MAMAAAWSPALAAVLLAAAVASASNSEGDALYALRRALADPRGVLQSWDPTLVNPCTWFHVTCATAPAASPA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_01g0012220 | OsKYG_01g0012220.03 | Chr01 | 10160394 | 10164401 | - | IsoSeq | ||
| CDS seq | ATGTCTCGAACAATGATCTTTGCGGCACGATTCCTACTAGCGGGCCTTTTGAGCATATAC |
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| Protein seq | MSRTMIFAARFLLAGLLSIY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 10162806 | 10164118 | - | OsKYG_01g0012220.02 | OsKYG_01g0012220.02,OsKYG_01g0012220.01,OsKYG_01g0012220.03 | All |
| SE | Chr01 | 10161872 | 10162735 | - | OsKYG_01g0012220.01 | OsKYG_01g0012220.02,OsKYG_01g0012220.01,OsKYG_01g0012220.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.858305 | 27.295940 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0279800 | SBH | 4.516546 | 3.064296 | 18.462210 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g17250 | SBH | 2.486948 | 1.594708 | 4.179057 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0279800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0012610 | SBH | 3.314848 | 19.322317 | 18.064363 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0012300 | SBH | 0.731664 | 4.802319 | 4.735417 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0012640 | SBH | 5.246065 | 23.924568 | 26.454285 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0012100 | SBH | 0.381584 | 0.863463 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0012200 | SBH | 16.795937 | 24.858669 | 37.170464 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0166300 | SBH | 20.6313675 | 40.129381 | 59.6050625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0012130 | SBH | 1.553266 | 1.584764 | 2.542441 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0163600 | SBH | 20.9896415 | 29.601054 | 63.4595795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0012140 | SBH | 0.391875 | 0.322095 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0036330 | SBH | 1.919805 | 83.656090 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0012120 | SBH | 5.845068 | 31.972692 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0012280 | SBH | 2.698003 | 2.435953 | 4.170121 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0012090 | SBH | 0.687408 | 10.825159 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G012280 | SBH | 2.352120 | 10.527529 | 8.430974 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0012130 | SBH | 6.591588 | 14.994800 | 19.610842 |
