Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0012100 | OGI:01013090 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:9854963-9859084 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGAATAATCAGTAGTACCAGCGCCGCTTATTATTTATTTTAAAAACATATTTCGGCATATCATTTTGGACCATAACAACATGGCATCTCAACAGTCAACAATGCAAAAGTAAAGAGAACTTTTGAACCAGTCCCTTATAATAGGGCAACTAAATCAAAACTGGCAATAAATATCAAGACTTAGTTCATCAAAGCAACCATACATTACCAGGTATTATCAGTCAAGAGGGCCTCAGGCTTGCGATAAATATTATCTACACTACAAGGGTTGAGCTGAAGCCTAGTCTTTACTTGCAGTATCTCGTACAAGCAAAGCAACCAAGCTTGCACATTTACCAGGTACTCCGATAAAGCTAATTTGCTATTGATCTATATCACACGAGCGACAGGGACTGATTGGCACGTTCAGCAGTTTGTGTCATATGTTGCAAGCCCTTGCAACTCGGGCCCCTCCAACCTTGGATTTTTGTCAAAGCTGCAGAGAGAAAAACAATGGGTTAGAAACAATGCAAACTGGGGCGATGAGTTCTGCATATGCCAAGTGACGACAATTAATGGAAGTCCACAATACATAGAAAACAAAATATGGCACTTAGTGAGTCATTTGTTGTGTCGATTAATTCTGATTCAGCAATTAGCGTATATGGAAAAGAAATAAAAAAATAAACTCTGGATCTATGGCATACCACAGAAAAATGAGTAGCTCTTAGAAGATAAAGAATTCAAGAAAATGAGTAGAGCACTCTTTTTTATCTGGTACATAGATATGTGCTACATAACAACCAAATTAGTATTATGGCAAAAGATGAGCTGCACTGTCAAATCAGAAAAACTTAGCCGAGGTTCACTAGTAATCAATTTTATGACTTCGGGTGTTTTGGTTTTTGGCTGATGGAATAGTGTGGCTAATGTCTCAAGTCCTCTCATTTATACAGAAGCACAACATTGGATGTGCAAAAGCAAAAAACAAGTCAACATAATTGTAAAATAAATTGGTAACAAGGCTTTTAGATCTTACTTGTTCAGGGGTATATGCTCAAAAGGCCCGCTAGTAGGAATCGTGCCGCAAAGATCATTGTTCGAGACATCTCTGGAAGCAAGAATAGATAGACAAATAAAAGATCATCATTAATATGTACAGAACATAAAAATTATGTGAAACAGCATTGTTAACTGAGCACTTACATCACTTTGAGACTAGATATTTTTGCCAGATCCCTCGGGATTGGACCGTTTAAACTGTTGTCATTAAGCCGCCTAAAGAAACAAAAATAAAAGGATTAACATAGCGTAAAAGTACCAGTGTACCATAGCATAAAAAGAATTAAAAAGAAAGTGATGCTTGCATATGTGGCAAAATGGTGCAAAAGTGGATATATGTTAACTAAAGTATAGTTGCTTAAAAGAATAAGTACAGCTAATCACAAGAATAAGTATAGTTACTCACAAGAATACTAAGGAACTCAGCTTGCCAAGTTCTTTCGGTATGGTTCCAGTAATGTTGTTGTTATACAGATCCAAGCTAATAAGGTTCTTCAGACTCCCGAGCTCAGCTGGGATAGTGCCCTGAATATTGTTTTTGTACAGCTCTCTGTAACAATTTTTCAAAAACTAGTTAGAGCACTAACATGAATGTCAAGCTCAATTGCAGTAAAATAGCATCGGAAATTAAGGATGACCAAAGCATATTTTATAAATCAAATGGATACAAGACTTAATGATGCAGTCTTGGCACAAATCACGAGACTGAAAACAAACAGTTCGTTGGAAAAACTGTATAATATATTGTCTTATAGTGGACCATGTTCAATGCTGGTGTTTATTTTGCATATGAACAGCTCATATCAGATTCATATGTTCTGATATAGCTGAGATTCCCAGCATTTAGATTTAGTTCATCATTTTACTTAAAAAGAATCATCTCTCTTGCTCATTAAAATAACACTCCGAAAATGCTCTAGTTTCACTCCACTAGGAAACGGAAGCTGCAATCACATAACAGGAAGTGAGAAGATCAAAACAGTAAGTCAATAATTACGTGCCACAAGGAACTGTTGAAAACCACAAATTGTGTTCTAGATTTCTGGTAATGTGAGAGTTTCCATTTTTCCCCCAGTTTTTTCACCATTTGCCATGATATTTGCAGTTTAATTCATGAAGCCTAGCTGTTTAAATGACTTTACAAATCCAGCGCTGAAGCTTTATGAGTTCAAAAAAGAAGTGATGAAAGAAAGGAAGCTAGGTCTAACATAGTATTCCAGCTGTAACTTCTACATGACAAGCAGTTGGCAGTGTTGCTGAATGCTGACCATATGTAATGCAAACTTAATAGGACATGTGAGTTTTTAGCTTATCAGTGTCGGTGATCATTGCCATCAGAGAACCTTTGCTGAATGAACTCTACATTTTAACACTTCAGAAAATAAAGTGCATCAATATGTAGAAAGACTTACAGATATTGGAGATGCTCAAGGTGTCCCAGTTCAGGAGCAAGATGGCCTGACAAATTTGAGTTACCCAAGTCTCTACAAGATACAAAATTGTTAGAAAGTATCAGAAAAATGTTAAGATGGACAAAGACAATGAATTGAACCAAGAACATAGGTAACCATAACAAAATATATCTCTTGTATGGTAATGGCATCATGGTGAACGCTGCATCAAAAGAAACCACTTCGATGAATCAATTTCTTTCCTTCAGCAAGCAAACATATATAATAGATACCCTAAGTCCAAACCAATGGAAGGATGCAAGTGGACCGGTCCGCAAGCCCCCATATAGGCCATTTTTGCAGGCCAACCTATGGGTCAGCCCACGAAAATGTCCCATACGCAGGCTCGTGAGTCAGCCTGCTTGCATCCCTACAATGGAGTACATAAAAGACTACAAAAATCTAGTCGTACAGTGAAAGCAGTAAGACTCTATCTAGGGTGGTTGATTGCTAAGTACTCCCTCGTTCACATTTGACCAGCGCATTCCATCTTGACACCGAGACCAAGGGGGTATTTTTCCATTTAATCCCCATGATAATATCTGTATTAATTGGCTACATACACATCCTCGCTACATGCGGATTGGATACACAACTTTTTTTTTCTTTTTTTAAGCTGACCATTAGCAGGCAATGCATTGTTCCCGAGATGCATGGCGTGCTAGCGGAGTAACTCACGTGCGAACCGTGCAGCCAATGGGTAACGCGACAATCATCATTGGATAATTGCTTTTTGGTTTTACGTGGATCAATTGCGCACATAGAGAATATAGCTTGCATCAGCGATATTTCCATGCAGGATCAAGAAGTACTCCCCGGTTCCATTTATAGCTATCATCAGCATAATTATGCAAATACATGATGACATAGCTAACGTGAAAAGTATTGATATCAAACTACTACATGCAAGTAATTAGTAGATATTATATAGTGAGTAGCTTTACTGTTGCTACAAACTAACTAGTAACATTTACTATTACAGACAAACTGTATTGCAACGATGATTCCACATGGGCAGAACAAAATCTTTTAAAAAAAATTAAATGACAATCTACAAATCACGTTCTTTGCCAGTAGATCACGGTCTCACCAGAACCGAATGAACAACTAAATCACCATATCCCTTTCACCAACTGGTGTCAATTAACTCACAGATCCATTTGAAACTGTATTTAAGCATTAGCGGCCTAGCACAAAGCCCTCGCATTTCCAATACTACGGCAGAGGTCAGTACACCGAAGCAAACAAAAGCAGTACACAACGGAGGGAGCAAAACCGGCCGGTAGTAGCCAGCTCAGTCGGCGAGGCGGCGGCGGCGGTGGGGGGGGGGGGGGGGAGGTGGACTCACAGGCGGGTGACGCGGCCGGCGCGGTCGCAGGTGACGTGGAACCAGGTGCAGGGGTTGACGAGGGTCGGGTCCCAGCTCTGGAGCACGCCCCGGGGGTCCGCCAGCGCGCGCCGCAGCGCGTACAGCGCGTCCCCCTCCGAGTTGGACGCCGACGCCACGGCCGCCGCCAGCAAAACCGCCGCGAGCGCCGGGGACCAGGCCGCCGCCATCGCCATCGAAGCTTAGCTAGGGTTCCGGATGCGGGCGAGGAGGAGTGGGGAAATGGGCGGAGTGAGTGAAGGTA
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| CDS seq | ATGGCGATGGCGGCGGCCTGGTCCCCGGCGCTCGCGGCGGTTTTGCTGGCGGCGGCCGTGGCGTCGGCGTCCAACTCGGAGGGGGACGCGCTGTACGCGCTGCGGCGCGCGCTGGCGGACCCCCGGGGCGTGCTCCAGAGCTGGGACCCGACCCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGCCGGCCGCGTCACCCGCCTAGACTTGGGTAACTCAAATTTGTCAGGCCATCTTGCTCCTGAACTGGGACACCTTGAGCATCTCCAATATCTAGAGCTGTACAAAAACAATATTCAGGGCACTATCCCAGCTGAGCTCGGGAGTCTGAAGAACCTTATTAGCTTGGATCTGTATAACAACAACATTACTGGAACCATACCGAAAGAACTTGGCAAGCTGAGTTCCTTAGTATTCTTGCGGCTTAATGACAACAGTTTAAACGGTCCAATCCCGAGGGATCTGGCAAAAATATCTAGTCTCAAAGTGATAGATGTCTCGAACAATGATCTTTGCGGCACGATTCCTACTAGCGGGCCTTTTGAGCATATACCCCTGAACAACTTTGACAAAAATCCAAGGTTGGAGGGGCCCGAGTTGCAAGGGCTTGCAACATATGACACAAACTGCTGA
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| Protein seq | MAMAAAWSPALAAVLLAAAVASASNSEGDALYALRRALADPRGVLQSWDPTLVNPCTWFHVTCDRAGRVTRLDLGNSNLSGHLAPELGHLEHLQYLELYKNNIQGTIPAELGSLKNLISLDLYNNNITGTIPKELGKLSSLVFLRLNDNSLNGPIPRDLAKISSLKVIDVSNNDLCGTIPTSGPFEHIPLNNFDKNPRLEGPELQGLATYDTNC |
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| Function | Leucine-rich repeat protein 1 [UniProtKB/Swiss-Prot:Q5VQP7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0012100 | OsARC_01g0012100.01 | Chr01 | 9854963 | 9859084 | - | NAM | ||
| CDS seq | ATGGCGATGGCGGCGGCCTGGTCCCCGGCGCTCGCGGCGGTTTTGCTGGCGGCGGCCGTGGCGTCGGCGTCCAACTCGGAGGGGGACGCGCTGTACGCGCTGCGGCGCGCGCTGGCGGACCCCCGGGGCGTGCTCCAGAGCTGGGACCCGACCCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGCCGGCCGCGTCACCCGCCTAGACTTGGGTAACTCAAATTTGTCAGGCCATCTTGCTCCTGAACTGGGACACCTTGAGCATCTCCAATATCTAGAGCTGTACAAAAACAATATTCAGGGCACTATCCCAGCTGAGCTCGGGAGTCTGAAGAACCTTATTAGCTTGGATCTGTATAACAACAACATTACTGGAACCATACCGAAAGAACTTGGCAAGCTGAGTTCCTTAGTATTCTTGCGGCTTAATGACAACAGTTTAAACGGTCCAATCCCGAGGGATCTGGCAAAAATATCTAGTCTCAAAGTGATAGATGTCTCGAACAATGATCTTTGCGGCACGATTCCTACTAGCGGGCCTTTTGAGCATATACCCCTGAACAACTTTGACAAAAATCCAAGGTTGGAGGGGCCCGAGTTGCAAGGGCTTGCAACATATGACACAAACTGCTGA
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| Protein seq | MAMAAAWSPALAAVLLAAAVASASNSEGDALYALRRALADPRGVLQSWDPTLVNPCTWFHVTCDRAGRVTRLDLGNSNLSGHLAPELGHLEHLQYLELYKNNIQGTIPAELGSLKNLISLDLYNNNITGTIPKELGKLSSLVFLRLNDNSLNGPIPRDLAKISSLKVIDVSNNDLCGTIPTSGPFEHIPLNNFDKNPRLEGPELQGLATYDTNC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.381584 | 0.863463 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0279800 | SBH | 4.516546 | 3.064296 | 18.462210 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g17250 | RBH | 2.486948 | 1.594708 | 4.179057 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0279800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0005120 | SBH | 0.0 | 6.103118 | 1.304607 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0004820 | RBH | 0.0 | 7.977612 | 0.439358 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0012640 | RBH | 5.246065 | 23.924568 | 26.454285 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0036740 | SBH | 0.906643 | 3.853662 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0012200 | RBH | 16.795937 | 24.858669 | 37.170464 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0166300 | SBH | 20.6313675 | 40.129381 | 59.6050625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0004870 | SBH | 0.0 | 0.621607 | 0.031122 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0163600 | RBH | 20.9896415 | 29.601054 | 63.4595795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0012140 | SBH | 0.391875 | 0.322095 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0004880 | RBH | 0.0 | 13.362262 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0012120 | SBH | 5.845068 | 31.972692 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0029240 | RBH | 0.085185 | 0.423978 | 0.142664 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0012090 | RBH | 0.687408 | 10.825159 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G004930 | RBH | 0.0 | 5.126529 | 1.006583 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0004820 | RBH | 0.0 | 10.053276 | 1.262936 |
