Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsKeNa_01g0012300 | OGI:01013090 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:9998270-10002363 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | taatcagtagtaccagcgctgcttattatttattttaaaaacatatttcggcatatcattttggaccataacaacatggcatctcaacagtcaacaatgcaaaagtaaagagaacttttgaaccagtcccttataatagggcaactaaatcaaaactggcaataaatatcaagacttagttcatcaaagcaaccatacattaccaggtattatcagtcaagagggcctcaggcttgcgataaatattatctacactacaagggttgagctgcagcctagtctttacttgcagtatctcgtacaagcaaagcaaccaagcttgcacatttaccaggtactccgataaagctaatttgctattgatctatatcacacgagcgacagggactgattggcacgttcagcagtttgtgtcatatgttgcaagcccttgcaactcgggcccctccaaccttggatttttgtcaaagctgcagagagaaaaacaatggcttagaaacaatgcaaactggggcgatgagttctgcatatgccaagtgacgacaattaatggaagtccacaatacatagaaaacaaaatatggcacttagtgagtcatttgttgtgtcgattaattctgattcagcaattagcgtatatggaaaagaaataaaaaaataaactctggatctatggcataccacagaaaaatgagtagctcttagaagataaagaattcaagaaaatgagtagagcactctttttatctggtacatagatatgtgctacataacaaccaaattagtattatggcaaaagatgagctgcactgtcaaatcagaaaaacttagccgaggttcactagtaatcaattttatgacttcgggtgttttggtttttggctgatggaatagtgtggctaatgtctcaagtcctctcatttatacagaagcacaacattggatgtgcaaaagcaaaaaacaagtcaacataattgtaaaataaattggtaacaaggcttttagatcttacttgttcaggggtatatgctcaaaaggcccgctagtaggaatcgtgccgcaaagatcattgttcgagacatctctggaagcaagaatagatagacaaataaaagatcatcattaatatgtacagaacataaaaattatgtgaaacagcattgttaactgagcacttacatcactttgagactagatatttttgccagatccctcgggattggaccgtttaaactgttgtcattaagccgcctaaagaaacaaaaataaaaggattaacatagcgtaaaagtaccagtgtaccatagcataaaaagaattaaaaagaaagtgatgcttgcatatgtggcaaaatggtgcaaaagtggatatatgttaactaaagtatagttgcttaaaagaataagtacagctaatcacaagaataagtatagttactcacaagaatactaaggaactcagcttgccaagttctttcggtatggttccagtaatgttgttgttatacagatccaagctaataaggttcttcagactcccgagctcagctgggatagtgccctgaatattgtttttgtacagctctctgtaacaatttttcaaaaactagttagagcactaacatgaatgtcaagctcaattgcagtaaaatagcatcggaaattaaggatgaccaaagcatattttataaatcaaatggatacaagacttaatgatgcagtcttggcacaaatcacgagactgaaaacaaacagttcgttggaaaaactgtacaatatattgtcttatagtggaccatgttcaatgctggtgtttattttgcatatgaacagctcatatcagattcatatgttctgatatagctgagattcccagcatttagatttagttcatcattttacttaaaaagaatcatctctcttgctcattaaaataacactccgaaaatgctctagtttcactccactaggaaacggaagctgcaatcacataacaggaagtgagaagatcaaaacagtaagtcaataattacgtgccacaaggaactgttgaaaaccacaaattgtgttctagatttctggtaatgtgaggagtttccatttttcccccagttttttcaccatttgccatgatatttgcagtttaattcatgaagcctagctgtttaaatgactttacaaatccagcgctgaagctttatgagttcaaaaaagaagtgatgaaagaaaggaagctaggtctaacatagtattccagctgtaacttctacatgacaagcagttggcagtgttgctgaatgctgaccatatgtaatgcaaacttaacaggacatgtgagtttttagcttatcagtgtcggtgatcattgccatcagagaacctttgctgaatgaactctacattttaacacttcagaaaataaagtgcatcaatatgtagaaagacttacagatattggagatgctcaaggtgtcccagttcaggagcaagatggcctgacaaatttgagttacccaagtctctacaagatacaaaattgttagaaagtatcagaaaaatgttaagatggacaaagacaatgaattgaaccaagaacataggtaaccataacaaaatatatctcttgtatggtaatggcatcatggtgaacgctgcatcgaaagaaaccacttcgatgaatcaatttctttccttcagcaagcaaacatatataataggtaccctaagtccaaaccaatggaaggatgcaagtggaccggtccgcaagcccccatataggccatttttgcaggccaacctatgggtcagcccacgaaaatgtcccatacgcaggctcgtgagtcagcctgcttgcatccctacaatggagtacataaaagactacaaaaatctagtcgtacagtgaaagcagtaagactctatctagggtggttgattgctaagtactccctcgttcacatttgaccagcgcattccatcttgacacttccatttaatccccatgataatatctgtattaattggctacatacacatcctcgctacatgcggattggatacacaactttttttttctttttttaagctgaccattagcaggcgatgcattgttcccgagatgcatggcgtgctagcggagtaactcacgtgcgaactgtgcagccaatgggtaacgcgacaatcatcattggataattgctttttggttttacgtggatcaattgcgcacatagagaatatagcttgcatcagcgatatttccatgcaggatcaaggagtactccccggttccatttatagctatcatcagcataattatgcaaatacatgatgacatagctaacgtgcaaagtattgatatcaaactactacatgcaagtaattagtagatattatatagtgagtagctttactgttgctacaaactaactagtaacatttactattacagacaaactgtattgcaacgatgattccacatgggcagaacaaaatcttttaaaaaaaattaaatgacaatctacaaatcacgttctttgccagtagatcacggtctcaccagaaccgaatgaacaactaaatcaccatatccctttcaccaactggtgtcaattaactcacagatccatttgaaactgtatttaagcattagcggcctagcacaaagccctcgcatttccaatactacggcagaggtcagtacaccgaagcaaacaaaagcagtacacaacggagggagcaaaaccggccggtagtagccagctcagtcggcgaggcggcggcggcggtgggggggggggaggtggactcacaggcgggtgacgcggccggcgcggtcgcaggtgacgtggaaccaggtgcaggggttgacgagggtcgggtcccagctctggagcacgccccgggggtccgccagcgcgcgccgcagcgcgtacagcgcgtccccctccgagttggacgccgacgccacggccgccgccagcaaaaccgccgcgagcgccggggaccaggccgccgccatcgccatcgaagcttagctagggttccggatgcgggcgaggaggagtggggaaatgggcggagtgagtgaaggta
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CDS seq | atggcgatggcggcggcctggtccccggcgctcgcggcggttttgctggcggcggccgtggcgtcggcgtccaactcggagggggacgcgctgtacgcgctgcggcgcgcgctggcggacccccggggcgtgctccagagctgggacccgaccctcgtcaacccctgcacctggttccacgtcacctgcgaccgcgccggccgcgtcacccgcctagacttgggtaactcaaatttgtcaggccatcttgctcctgaactgggacaccttgagcatctccaatatctagagctgtacaaaaacaatattcagggcactatcccagctgagctcgggagtctgaagaaccttattagcttggatctgtataacaacaacattactggaaccataccgaaagaacttggcaagctgagttccttagtattcttgcggcttaatgacaacagtttaaacggtccaatcccgagggatctggcaaaaatatctagtctcaaagtgatagatgtctcgaacaatgatctttgcggcacgattcctactagcgggccttttgagcatatacccctgaacaactttgacaaaaatccaaggttggaggggcccgagttgcaagggcttgcaacatatgacacaaactgctga
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Protein seq | MAMAAAWSPALAAVLLAAAVASASNSEGDALYALRRALADPRGVLQSWDPTLVNPCTWFHVTCDRAGRVTRLDLGNSNLSGHLAPELGHLEHLQYLELYKNNIQGTIPAELGSLKNLISLDLYNNNITGTIPKELGKLSSLVFLRLNDNSLNGPIPRDLAKISSLKVIDVSNNDLCGTIPTSGPFEHIPLNNFDKNPRLEGPELQGLATYDTNC |
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Function | Leucine-rich repeat protein 1 [UniProtKB/Swiss-Prot:Q5VQP7] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsKeNa_01g0012300 | OsKeNa_01g0012300.01 | Chr01 | 9998270 | 10002363 | - | NAM | ||
CDS seq | atggcgatggcggcggcctggtccccggcgctcgcggcggttttgctggcggcggccgtggcgtcggcgtccaactcggagggggacgcgctgtacgcgctgcggcgcgcgctggcggacccccggggcgtgctccagagctgggacccgaccctcgtcaacccctgcacctggttccacgtcacctgcgaccgcgccggccgcgtcacccgcctagacttgggtaactcaaatttgtcaggccatcttgctcctgaactgggacaccttgagcatctccaatatctagagctgtacaaaaacaatattcagggcactatcccagctgagctcgggagtctgaagaaccttattagcttggatctgtataacaacaacattactggaaccataccgaaagaacttggcaagctgagttccttagtattcttgcggcttaatgacaacagtttaaacggtccaatcccgagggatctggcaaaaatatctagtctcaaagtgatagatgtctcgaacaatgatctttgcggcacgattcctactagcgggccttttgagcatatacccctgaacaactttgacaaaaatccaaggttggaggggcccgagttgcaagggcttgcaacatatgacacaaactgctga
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Protein seq | MAMAAAWSPALAAVLLAAAVASASNSEGDALYALRRALADPRGVLQSWDPTLVNPCTWFHVTCDRAGRVTRLDLGNSNLSGHLAPELGHLEHLQYLELYKNNIQGTIPAELGSLKNLISLDLYNNNITGTIPKELGKLSSLVFLRLNDNSLNGPIPRDLAKISSLKVIDVSNNDLCGTIPTSGPFEHIPLNNFDKNPRLEGPELQGLATYDTNC
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.731664 | 4.802319 | 4.735417 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0279800 | SBH | 4.516546 | 3.064296 | 18.462210 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g17250 | RBH | 2.486948 | 1.594708 | 4.179057 |
Nipponbare | IRGSP 1.0 | RAP-db | Os01g0279800 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0012610 | RBH | 3.314848 | 19.322317 | 18.064363 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0036940 | SBH | 1.416334 | 57.577286 | 19.104084 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0005070 | RBH | 0.0 | 7.761576 | 0.467349 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0029200 | SBH | 0.0 | 0.029609 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0028890 | SBH | 0.365616 | 2.909062 | 0.788778 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0166300 | SBH | 20.6313675 | 40.129381 | 59.6050625 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0004870 | RBH | 0.0 | 0.621607 | 0.031122 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0163600 | RBH | 20.9896415 | 29.601054 | 63.4595795 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0028880 | RBH | 0.016680 | 0.000000 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0023200 | SBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0004940 | RBH | 0.0 | 84.853699 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0004890 | RBH | 0.0 | 1.489846 | 0.000000 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0029040 | SBH | 0.018302 | 1.806314 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G012280 | RBH | 2.352120 | 10.527529 | 8.430974 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0004820 | SBH | 0.0 | 10.053276 | 1.262936 |