Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_11g0025070 | OGI:11010520 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr11:30736771-30740838 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACGCCTAGCTACCACAAAATCAACACACATGGCCAAGAACGTAATGCGCCTCGCAATACTGGCCATGGCACAGCTAGTGCTGCTGTGGCCTGCTACTATGGCTGGGCAGCGGGCGGGGTGCCCGAGCAAGTGCGGCGACGTCGACATCCCCTTCCCTTTCGGCGTCGGCGACGACCACTGCGCCTGGCCGGGCTTCAACGTCGTCTGCAATCATAGCTTCAGCCCACCCAGACCCTACTTTAGTGCACGGTAGTGCATGGTAGTGCTTTAGTCCTAACCGCATACCACCCCATCTCATATATGAATCCCCTTTAGTCTGTGGTGCATATCTTTTTTTAACCAATTTAATTACTTATATCTTTTAAATCACATATTATTTTTAAGATCTATTTGCATTATTGTACTCTACATAAAATATGTGATAAAACAATATCCATGTTGAATATATTCAAACATTTTATTAATTCAAAAGTAATTTATTTAAATTGTATAAGTAGCTTAGCTATGCAGTAGAAGCAATTCTCTGTAGCATTAGAAGTAATTATATTATGACTGAGTTGAAATAAGAAACTTTGTAGAGTAAATTCACGAGCAAAGTGTAGAGAAGATTTTTAAGTAAATACATTTATGAAATTAAATTCAATAAAGGCTAAAAGTAATTACATAGATCTGAAAGTAACTTAGCACAAAACGGAAGTAAGTTGTTACAACATTAGAAGTAAATTCATTGTAGATCAACTCGATCAGATCGATGTAACATAACTCACATAATCATATGGGCAGTTGGCTGTCAATCAAAGTTTTTTAAAAATGAAAACTGCGCGATTCCCTTTTTAATTTTCTACCTGATATTCAATACAAATACCCATCAATGAGTCAACTAGGAGGATTAAATTAATGTAGATATAATTAAGCTGAGTCACAAGGCCAATCATTAATCAAAAGTGGAGTATTATATTTATACAAAGACATGCATGGTCACTAATCTCCCACGCTCCTAGCTACCACGTACAAGCAAGCAAGAAAGAAGTGATGATATCTGAATCTTGATTGCTTCTCCTCTGTGGAATTTTGCTATGATGATTCTTTAATGATGCGATGAGAGGAGTAGGTAGAGGGGGAGAGGGAGTGGGAGGATTGAGTGGGTAGTGGGAGAAAAAAATGGAGTGGGGAGAAAAGAGGGAGAGATTCCAGTGTGGGAGAGAGAAACTCGCAAGTAGCTAATTTCGTATGTGGGTCACTTAATAGGCCCATGAACCGATCACAGGGAAGCGATTTTTGCAGTGTACAGTAGTTATAGCCTTCTTGAAATCTAAAGGGGGGTTTGGTCAGAAAAATTAATTATGTAGTAGTGATGCATACTTTTTATGTTTTTTATCCAAGAAGTAAAATAATAGACCATCGATTTAAATAGAGATTGTTGTTTCAGAATTTATAGGTTTTTTTTCTAATTTATGTTTTGGACAGAATGATTTTTCATCGATTTTGATTCAGACTCATCTGAAACATCATCATCCAACCCAAGAAATTTCAGGAGTTCCAGATGCCGATCCAAAAATCGAGCACATCTGCCGCCGTTTCCCAATTCACATAGGTATGGTCGAACTATTCTACTGTGTGATCTCTTTAGTGATCTATTTAAGATTTTCTCGATCTTTTATATGATTTGTCTGGACTTTTAAGTGATGAATTACTGGGGGATCATTTCTCTATTTAATGAACTGTTCGGTGTCCGTTGAACGTACATGTTTCAACCTAGCTATTTAAGAAATTACCGATTACTGATTTTGACTGAAATAATGAAATAGCTGTTGATCTTTAACATGTTGATGAGCCGTGCTAGTAATCCGGTAATCAGGTTCAGTTGACAAATCATAGACCCTTATCTATGACTTTTCTCTAAATCTAAATATAAACAAGCAAATATAATATTTAATTTTCCATATTTCCTGTTTGTATGTCCGTATACACATCATATAGTTTGCAGCTTACCTTTTCTTTTTTACCAATGACATGGTTCAAGATGTTGAAAATGCGAAGGAAGCGTCCAAAGTCAAGGTCAGGATAATCAGACTTTGGGATGGCATAAATCCCAACAGACGTGATACTTATTAATAAAAGGTCGGTATAAATATTCCCCTTGCAAATAATGTTGGTATTTATGGGTATCCCCAGAGAGCGCTCACATTTACTATAAACGTTAACTAAAAGATCTGTAGTTTATTAGGTCAATCGTATTACCATGACCATTGATCAATCAAAGAATTTGTGTTAAAACCAAGATTAATTGTGCAACTTCTGGGATGCTCGCTCATTAGGCAGAAAGATCTTACCACAGTTGATTAGGTGGTTCGCATTCCTATGATATTCGATATATATATATATATATATATGAATTCGTGTAAATTAAAATATGCCACAAAAAGTAACATGGGCTCTTTAGTTTTATTTTTACAAAATTAATAATTCTGAAATCAGACATCATAGTGATCACAGAGTTTCACCTTTCTTGACTCCCAATTTAGAAATTTGTTAATTTAATTTCATTTTTTAAATTCATAATTAGTAAGTTGAACTTATGTGAACTCCAAACCATACAACTAAAATGTATTATTTACTATTTTCATAATTATTAAATCATAAAAGTTACAATTGGGACTTCAATCATGAACAATCGATAACCGTGGCTCTAGACCGAGTACAATTTCATATTTTATTTACAAATTTTGAAATTATTAAATCATAAGATTCTTTACAATTGAAAGTATAAAGCATGTATAATTATGTACTTTTAAAGATTCCAACTTGAAAATGTATAACTTTCAAGAAAATTTGATGACCAACATATTCATCACAGGATTACATTTTTAATATTTATGTTGTTAATAACTATAGCCCATGCAACACATGGGTTAGCGACCAGTATTATTAAGAATGTGACTAGGTAGTGCACGGTAGTGCTTTAGTCCTAACCGCATACCACCCCATCTCATATATGAATCCCCTTTAGTCTGTGGTGCATATCTTTTTTTAACCAATTTAATTACTTATATCTTTTCAATCACATATCATTTTTAAGATCTATTTAATTCAAAAGTAATTTATTTAAATTGTATAAGTAGCTTAGCTATGCAGTAGAAGCAATTCTCTGTAGCATTAGAAGTAATTATATTATGACTGAGTTAAAATAAGAAACTTTGTAGAGTAAATTCACAAGTAAAGTGTAGAGAAGATTTTTAAGTAAATACATTTATGAAATTAAATTCAATAAAGGCTGAAAGTAATTACATAGATCTGAAAGTAACTTAGCACAAAACGGAAGTAAGTTGTTATAACATTAGAAGTAAATTCATTGTAGAGAGAAAAATATGGTTTATCTAAAAATTAAATTTAAATTTCACAAATTATAGAATTGACTTAAAAAATAAAAATAGTCAACTTATAGCATTATGAATGTATAAGAAGTAATTTAATCAAATCTAAAAGTAATATATATATGTGATAAAAGTAACTTACGTATTTAATAAAAGTAATTTACAAACATAAATATTTTTCTATCGTAATATAATCATGTAAGTTATTGTTGTAAAGTTTTAATTGCACAAATACAGTTGTGTAATCGGATTGTAAATCGAATAAGTAATTTGAGAGAAAATTTTATAAGAAGGTTAAAAAAGACGTGCATGCCAAATAGCAAAAAAAGACCTGCATGTGTATTGTACTTCTCTCACATATGAGTTCTCTCACATATGAGTGCCGCTGGTTAAGTCTAAACCGAGAGAGGTTTCTCAAATTTGATTTTGCATATTAATAATTAGTCACCCCATCAACATCAACAGCAGTAGCAGTATATAAAGAGATGCATGGCAAATGCAAATCTCGCACATTCTAGCAACACCATAGCTAGCGGCCATGGCACAAGGAGTGATGCTGTGGTATGATGATCTCCTAGCAGTATTAGTACTTTCTGTGCTGGTGGCTACGTCGTCGACGGCGGCGAACTGCGGCAGGAAGTGCGGCGACGTGCGCATCCCCTACCCGTTTGGCATCGGCGTCGACTGCGCCTGA
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| CDS seq | ATGGCCAAGAACGTAATGCGCCTCGCAATACTGGCCATGGCACAGCTAGTGCTGCTGTGGCCTGCTACTATGGCTGGGCAGCGGGCGGGGTGCCCGAGCAAGTGCGGCGACGTCGACATCCCCTTCCCTTTCGGCGTCGGCGACGACCACTGCGCCTGGCCGGGCTTCAACGTCGTCTGCAATCATAGCTTCAGCCCACCCAGACCCTACTTTACGGCCATGGCACAAGGAGTGATGCTGTGGTATGATGATCTCCTAGCAGTATTAGTACTTTCTGTGCTGGTGGCTACGTCGTCGACGGCGGCGAACTGCGGCAGGAAGTGCGGCGACGTGCGCATCCCCTACCCGTTTGGCATCGGCGTCGACTGCGCCTGA |
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| Protein seq | MAKNVMRLAILAMAQLVLLWPATMAGQRAGCPSKCGDVDIPFPFGVGDDHCAWPGFNVVCNHSFSPPRPYFTAMAQGVMLWYDDLLAVLVLSVLVATSSTAANCGRKCGDVRIPYPFGIGVDCA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_11g0025070 | OsIR64_11g0025070.01 | Chr11 | 30736799 | 30740838 | + | NAM | ||
| CDS seq | ATGGCCAAGAACGTAATGCGCCTCGCAATACTGGCCATGGCACAGCTAGTGCTGCTGTGGCCTGCTACTATGGCTGGGCAGCGGGCGGGGTGCCCGAGCAAGTGCGGCGACGTCGACATCCCCTTCCCTTTCGGCGTCGGCGACGACCACTGCGCCTGGCCGGGCTTCAACGTCGTCTGCAATCATAGCTTCAGCCCACCCAGACCCTACTTTACGGCCATGGCACAAGGAGTGATGCTGTGGTATGATGATCTCCTAGCAGTATTAGTACTTTCTGTGCTGGTGGCTACGTCGTCGACGGCGGCGAACTGCGGCAGGAAGTGCGGCGACGTGCGCATCCCCTACCCGTTTGGCATCGGCGTCGACTGCGCCTGA
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| Protein seq | MAKNVMRLAILAMAQLVLLWPATMAGQRAGCPSKCGDVDIPFPFGVGDDHCAWPGFNVVCNHSFSPPRPYFTAMAQGVMLWYDDLLAVLVLSVLVATSSTAANCGRKCGDVRIPYPFGIGVDCA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_11g0025070 | OsIR64_11g0025070.02 | Chr11 | 30736771 | 30737230 | + | IsoSeq | ||
| CDS seq | ACGCCTAGCTACCACAAAATCAACACACATGGCCAAGAACGTAATGCGCCTCGCAATACTGGCCATGGCACAGCTAGTGCTGCTGTGGCCTGCTACTATGGCTGGGCAGCGGGCGGGGTGCCCGAGCAAGTGCGGCGACGTCGACATCCCCTTCCCTTTCGGCGTCGGCGACGACCACTGCGCCTGGCCGGGCTTCAACGTCGTCTGCAA
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| Protein seq | TPSYHKINTHGQERNAPRNTGHGTASAAVACYYGWAAGGVPEQVRRRRHPLPFRRRRRPLRLAGLQRRLQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 3.375582 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0690332 | SBH | 1.591448 | 1.521705 | 0.750162 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g46880 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0690332 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024540 | SBH | 1.163327 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024510 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0024030 | RBH | 0.0 | 49.671188 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023790 | SBH | 0.357024 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024370 | SBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0443700 | SBH | 0.0665605 | 0.0833025 | 0.0615995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0025060 | RBH | 0.037942 | 27.278511 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0439400 | SBH | 2.028648 | 0.349017 | 0.0047145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024620 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024730 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0024350 | RBH | 0.0 | 79.943008 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024260 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024270 | SBH | 0.0 | 1.015214 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
