Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsIR64_07g0024860 OGI:07072700 | 16/16 IR 64 | OsIR64RS1 | Gramene(+IsoSeq) Chr07:27550933-27553279
Gene Symbol CRP5, OsCRP5, cpRNP5, RNP29
DNA seq

GAGCCCCAAAACCTTATCTTCCCAAAGCCTCATCTCCTCCTTCCTCCCACCACCTCGCCTCGCCATGGCGGCCACCCTCTTCTCCACCTCGCTCACCCCCACCTTCCTCCCGGCCGTCCCCTGCCCCAAGCCCGCGCCGCCGGCCTCCGCCTGCTTCCCCTGCGCGCTGCCGCCGCGCGCCGCGCTAGCGCTGCGGAGGCGGCTTTCTCCCGTGGCCGTCGCGGTGTCGTCGGAGGTGGAGGAGGAGGAGGGTGGCGCGGAGTCCGAGGGGGAGTTCGCCGAGGACCTCAAGGTGTTTGTTGGTAACCTTCCGTTCAGCGTCGACAGCGCGCAGCTCGCGGGGCTCTTCGAGCAGGCCGGCTCCGTTGAGATGGTCGAGGTATAAATTACTCACACGGCCTCTTTTTCGAATAGATTCATAGTTTCATCTCGGTAAATTGGGCGACGCAATTTTGCTAGAGTGGACTAAACAGTCTATTTATACATGAGGAATCCACTAGATGAGGAATTACTGCAACGAATTGGTTCAGTGTTCTCTAGGATTTATATTTGAGTTTTATATGTTAATGCTCAAATGTTTTTTTTAATTGGTTCAATAGTAGTTAAATTACGCAACAAATAGATGTTCTGAATTCAATTGTCCAGCCAAGCAAGGCAACTACAGAGTGTCATGCGTACAAGTGAGTGGGTTCTTCTCATGATAATAATACTAGGTTCTCGTTTTCTTTTTTTCTTTTTTTTTTGTGACAGGTTGTATATGACAGACAGACCGGAAGAAGCCGTGGCTTTGGATTCGTCACAATGTCTACAGCCGAAGAAGCTGGTGCTGCCGTCGAACAATTCAATGGATACGTGAGTATACTCCCATGTTATATTAATCTCTTTTGTGGTGCATTCTTATAAGTGGGTTAATTAGTTATAGCGGAAATTTGTGCATCTATGCGAAAAGTTTAATTCTCTATCAACTGTGATGTTGTAGTATTGATGGTTTATGAACATTGTGCACTTAAAATTAACTATTTATGTAGCAAAAGGTTATACTTGAACCAGCATTACTAAAATCCTGAAACCTGATTCTCAGCATGACTGACTGCTTTTTCATGTCGTTTTGACATTTTGCTTAATGTCTTGAGACCAATCCATCAAAAATTGATTCGTGTCCAAATCCCTGGCAATACATTGAATGGTTGAATATTAGTGATTAATCATATTATATTTCAAAACAGACATTCCAAGGAAGACCTCTGAGGGTAAACTCAGGGCCGCCTCCGCCTCGGGATGATTTCGCGCCAAGATCACCTAGGGGTGGTGGGAGCAACTTTGATTCATCCAACAAGCTCTATGTAGGGAACCTTGCTTGGGGTGTCGACAACTCGACACTCGAGAACCTGTTCAGTGAGCAGGGAACCGTGCTCGATGCCAAGGTCATCTACGACAGGGAGAGCGGCAGGTCGAGGGGTTTTGGTTTTGTCACCTATGGCTCCGCTGAAGAAGTCAACAATGCCATATCAAATCTTGACGGCGTTGTAAGTACCAAACATATTCTTATTTTAACATGTCAAATTTCACCATTCCAATTCCCTCTCAAGCTAAGTTGCTCGAGGTGATTTGTATATATAATTGCTCATATGATTTCAGTAATTGTAAGTATGCTAATTGATTGTGTGCTTTTGTTCTTTAGGACCTGGACGGCAGGCAGATCCGAGTTACAGTTGCAGAATCAAAGCCAAGGCGCCAATTTTGAGATTTTTTTTTTGGTTATGTTGATTTAGAGGTTGATGATGTGCTTCCAAGATGTTAGTTTGTAGCTTCTACTATTGTACACCAATATGGCGAAAAGGAAAATTGATGCGGTTGATGAGAGACTGAAAGTCTGAAATTGTACACGAGGGGAAGATTTTTCCCCAAAGATGCAATGCACAGATCCTCTTGTTAGAAAGACCATCTTTATCTCTTCCAATCTTGTTTGATCCCCAATTTGGTTTCATCTCAGCCGTTGGCATGTATACAATGTACATGTGCGGTGGTAGCATATATGGATTGATAGTTGGACCCCTCATAGATTATTGATTGCGTTGTCTCACCATCAACATTGTGCCGTTGTCTCGCCATCAACATTGTGCGGCCATGGATAAAGGATGTATGCAGCAAGCAAAAGAGGAAGAAGACCCCAAACCCAAAGCTTATCTACCCAATCGATCATTTTGCGTAATGCATGTGCTTCCTTTTCCCCTCCATTGATATCTGCCCTTTCAATTTCATGCTCACCTCGTCCAACTAATGGACGATCGATGAGCTGTCTTGCATGTTAGAGTCGATCATCTATGGACTTTCATTAATTTCCCAT

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CDS seq

ATGGCGGCCACCCTCTTCTCCACCTCGCTCACCCCCACCTTCCTCCCGGCCGTCCCCTGCCCCAAGCCCGCGCCGCCGGCCTCCGCCTGCTTCCCCTGCGCGCTGCCGCCGCGCGCCGCGCTAGCGCTGCGGAGGCGGCTTTCTCCCGTGGCCGTCGCGGTGTCGTCGGAGGTGGAGGAGGAGGAGGGTGGCGCGGAGTCCGAGGGGGAGTTCGCCGAGGACCTCAAGGTGTTTGTTGGTAACCTTCCGTTCAGCGTCGACAGCGCGCAGCTCGCGGGGCTCTTCGAGCAGGCCGGCTCCGTTGAGATGGTCGAGGTTGTATATGACAGACAGACCGGAAGAAGCCGTGGCTTTGGATTCGTCACAATGTCTACAGCCGAAGAAGCTGGTGCTGCCGTCGAACAATTCAATGGATACACATTCCAAGGAAGACCTCTGAGGGTAAACTCAGGGCCGCCTCCGCCTCGGGATGATTTCGCGCCAAGATCACCTAGGGGTGGTGGGAGCAACTTTGATTCATCCAACAAGCTCTATGTAGGGAACCTTGCTTGGGGTGTCGACAACTCGACACTCGAGAACCTGTTCAGTGAGCAGGGAACCGTGCTCGATGCCAAGGTCATCTACGACAGGGAGAGCGGCAGGTCGAGGGGTTTTGGTTTTGTCACCTATGGCTCCGCTGAAGAAGTCAACAATGCCATATCAAATCTTGACGGCGTTGACCTGGACGGCAGGCAGATCCGAGTTACAGTTGCAGAATCAAAGCCAAGGCGCCAATTTTGA

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Protein seq

MAATLFSTSLTPTFLPAVPCPKPAPPASACFPCALPPRAALALRRRLSPVAVAVSSEVEEEEGGAESEGEFAEDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQFNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVAESKPRRQF

Function 29 kDa ribonucleoprotein A, chloroplastic [UniProtKB/Swiss-Prot:Q08935]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsIR64_07g0024860 OsIR64_07g0024860.01 Chr07 27550933 27553279 + NAM
CDS seq

ATGGCGGCCACCCTCTTCTCCACCTCGCTCACCCCCACCTTCCTCCCGGCCGTCCCCTGCCCCAAGCCCGCGCCGCCGGCCTCCGCCTGCTTCCCCTGCGCGCTGCCGCCGCGCGCCGCGCTAGCGCTGCGGAGGCGGCTTTCTCCCGTGGCCGTCGCGGTGTCGTCGGAGGTGGAGGAGGAGGAGGGTGGCGCGGAGTCCGAGGGGGAGTTCGCCGAGGACCTCAAGGTGTTTGTTGGTAACCTTCCGTTCAGCGTCGACAGCGCGCAGCTCGCGGGGCTCTTCGAGCAGGCCGGCTCCGTTGAGATGGTCGAGGTTGTATATGACAGACAGACCGGAAGAAGCCGTGGCTTTGGATTCGTCACAATGTCTACAGCCGAAGAAGCTGGTGCTGCCGTCGAACAATTCAATGGATACACATTCCAAGGAAGACCTCTGAGGGTAAACTCAGGGCCGCCTCCGCCTCGGGATGATTTCGCGCCAAGATCACCTAGGGGTGGTGGGAGCAACTTTGATTCATCCAACAAGCTCTATGTAGGGAACCTTGCTTGGGGTGTCGACAACTCGACACTCGAGAACCTGTTCAGTGAGCAGGGAACCGTGCTCGATGCCAAGGTCATCTACGACAGGGAGAGCGGCAGGTCGAGGGGTTTTGGTTTTGTCACCTATGGCTCCGCTGAAGAAGTCAACAATGCCATATCAAATCTTGACGGCGTTGACCTGGACGGCAGGCAGATCCGAGTTACAGTTGCAGAATCAAAGCCAAGGCGCCAATTTTGA

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Protein seq

MAATLFSTSLTPTFLPAVPCPKPAPPASACFPCALPPRAALALRRRLSPVAVAVSSEVEEEEGGAESEGEFAEDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQFNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVAESKPRRQF

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Gene Transcript Chromosome Start End Strand Source
OsIR64_07g0024860 OsIR64_07g0024860.02 Chr07 27550933 27552890 + IsoSeq
CDS seq

GCCCCAAAACCTTATCTTCCCAAAGCCTCATCTCCTCCTTCCTCCCACCACCTCGCCTCGCCATGGCGGCCACCCTCTTCTCCACCTCGCTCACCCCCACCTTCCTCCCGGCCGTCCCCTGCCCCAAGCCCGCGCAGCTCGCGGGGCTCTTCGAGCAGGCCGGCTCCGTTGAGATGGTCGAGGTTGTATATGACAGACAGACCGGAAGAAGCCGTGGCTTTGGATTCGTCACAATGTCTACAGCCGAAGAAGCTGGTGCTGCCGTCGAACAATTCAATGGATACACATTCCAAGGAAGAC

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Protein seq

APKPYLPKASSPPSSHHLASPWRPPSSPPRSPPPSSRPSPAPSPRSSRGSSSRPAPLRWSRLYMTDRPEEAVALDSSQCLQPKKLVLPSNNSMDTHSKED

OsIR64_07g0024860.02OsIR64_07g0024860.01AS27551000 bp27551500 bp27552000 bp27552500 bp27553000 bp27553500 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr07 27550933 27551311 + OsIR64_07g0024860.01 OsIR64_07g0024860.01,OsIR64_07g0024860.02 All

Expression

Leaf Root Panicle
FPKM 19.932472 0.0 3.841234

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_07g0631900 RBH 170.955933 160.451950 23.738211
Nipponbare | IRGSP 1.0 | MSU LOC_Os07g43810 RBH 54.566872 51.708920 2.874298
Nipponbare | IRGSP 1.0 | RAP-db Os07g0631900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_07g0024360 RBH 16.632120 9.845211 10.231224
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_07g0024410 RBH 3.047909 1.946563 21.884422
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_07g0024280 RBH 54.960808 8.719491 47.713139
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_07g0024200 RBH 11.727156 0.619102 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_07g0024340 RBH 153.817780 2.098911 76.197052
Minghui 63 | MH63RS3 | HZAU OsMH63_07G0430300 RBH 323.18589 71.833958 15.467638
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_03g0019080 RBH 4.330230 0.546175 2.563618
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_07G0441600 RBH 251.395317 37.756855 37.2850875
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_07g0024100 RBH 3.963773 0.146703 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_07g0024250 RBH 12.947385 1.562067 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_07g0024180 RBH 108.571381 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_07g0024350 RBH 45.237507 0.575224 11.012444
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_07g0024110 RBH 15.309613 8.123934 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_07G024080 RBH 22.480320 0.904277 13.913924
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_07g0024100 RBH 83.944954 53.263729 21.417736
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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