Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_07g0024200 | OGI:07072700 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr07:26067329-26069422 | ||||||||
| Gene Symbol | CRP5, OsCRP5, cpRNP5, RNP29 | ||||||||||
| DNA seq | agccccaaaaccttatcttcccaaagcctcatctcctccttcctcccaccacctcgcctcgccatggcggccaccctcttctccacctcgctcacccccaccttcctcccggccgtcccctgccccaagcccgcgccgccggcctcagcctgcttcccctgcgcgctgccgccgcgcgccgcgctagcggcgccaccggcgccgctgcggaggcggctttctcccgtggccgtcgcggtgtcgtcggaggtggaggaggaggagggtggcgcggagtccgagggggagttcgccgaggacctcaaggtgtttgttggtaaccttccgttcagcgtcgacagcgcgcagctcgcggggctcttcgagcaggccggctccgttgagatggtcgaggtataaattactcacacggcctctttttcgaatagattcatagtttcatctcggtaaattgggcgacgcaattttgctagagtggactaaacagtctatttatacatgaggaatccactagatgaggaattactgcaacgaattggttcagtgttctctaggatttatatttgagttttatatgttaatgctcaaatgttttttttaattggttcaatagtagttaaattacgcaacaaatagatgttctgaattcaattgtccagccaagcaaggcaactacagagtgtcatgcgtacaagtgagtgggttcttctcatgataataatactaaaaaaaactagaatattagggaaggacctaatatcaaataattaggagggatgaggctttaaacccaggtcgtctagcccaccaccttgtgaagctagccggaagacccctgggcatttctctcatgataataatactaggttctcgttttctttttttcTtttttttttttgtgacaggttgtatatgacagacagaccggaagaagccgtggctttggattcgtcacaatgtctacagctgaagaagctggtgctgccgtcgaacaattcaatggatacgtgagtatactcccatgttatattaatctcttttgtggtgcattcttataagtgggttaattagttatagcggaaatttgtgcatctatgcgaaaagtttagttctctatcaactgtgatgttgtagtattgatggtttatgaacattgtgcacttaaaattaactgtttatgtagcaaaaggttatacttgaaccagcattactaaaatcctgaaacctgattctcagcatgactgactgctttttcatgtcgttttgacattttgcttaatgtcttgagaccaatccatcaaaaattgtttcgtgtccaaatccctggcaatacattgaatggttgaatattagtgattaatcatattatatttcaaaacagacattccaaggaagacctctgagggtaaactcagggccgcctccgcctcgggatgatttcgcgccaagatcacctaggggtggtgggagcaactttgattcatccaacaagctctatgtagggaaccttgcttggggtgtcgacaactcgacactcgagaacctgttcagtgagcagggaaccgtgctcgatgccaaggtcatctacgacagggagagcggcaggtcgaggggttttggttttgtcacctatggctccgctgaagaagtcaacaatgccatatcaaatcttgacggcgttgtaagtaccaaacatattcttattttaacatgtcaaatttcaccattccaattccctctcaagctaagttgctcgaggtgatttgtatatataattgctcatatgatttcagtaattgtaagtatgctaattgattgtgtgcttttgttctttaggacctggacggcaggcagatccgagttacagttgcagaatcaaagccaaggcgccaattttgagattttttttttggttatgttgatttagaggttgatgatgtgcttccaagatgttagtttgtagcttctactattgtacaccaatatggcgaaaaggaaaattgatgcggttgatgagagactgaaagtctgaaattgtacacgaggggaagatttttccccaaagatgcaatatgcacagatcctcttgttaga
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| CDS seq | atggcggccaccctcttctccacctcgctcacccccaccttcctcccggccgtcccctgccccaagcccgcgccgccggcctcagcctgcttcccctgcgcgctgccgccgcgcgccgcgctagcggcgccaccggcgccgctgcggaggcggctttctcccgtggccgtcgcggtgtcgtcggaggtggaggaggaggagggtggcgcggagtccgagggggagttcgccgaggacctcaaggtgtttgttggtaaccttccgttcagcgtcgacagcgcgcagctcgcggggctcttcgagcaggccggctccgttgagatggtcgagacattccaaggaagacctctgagggtaaactcagggccgcctccgcctcgggatgatttcgcgccaagatcacctaggggtggtgggagcaactttgattcatccaacaagctctatgtagggaaccttgcttggggtgtcgacaactcgacactcgagaacctgttcagtgagcagggaaccgtgctcgatgccaaggtcatctacgacagggagagcggcaggtcgaggggttttggttttgtcacctatggctccgctgaagaagtcaacaatgccatatcaaatcttgacggcgttgacctggacggcaggcagatccgagttacagttgcagaatcaaagccaaggcgccaattttga
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| Protein seq | MAATLFSTSLTPTFLPAVPCPKPAPPASACFPCALPPRAALAAPPAPLRRRLSPVAVAVSSEVEEEEGGAESEGEFAEDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVETFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVAESKPRRQF |
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| Function | 29 kDa ribonucleoprotein A, chloroplastic [UniProtKB/Swiss-Prot:Q08935] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0024200 | OsARC_07g0024200.01 | Chr07 | 26067392 | 26069422 | + | NAM | ||
| CDS seq | atggcggccaccctcttctccacctcgctcacccccaccttcctcccggccgtcccctgccccaagcccgcgccgccggcctcagcctgcttcccctgcgcgctgccgccgcgcgccgcgctagcggcgccaccggcgccgctgcggaggcggctttctcccgtggccgtcgcggtgtcgtcggaggtggaggaggaggagggtggcgcggagtccgagggggagttcgccgaggacctcaaggtgtttgttggtaaccttccgttcagcgtcgacagcgcgcagctcgcggggctcttcgagcaggccggctccgttgagatggtcgagacattccaaggaagacctctgagggtaaactcagggccgcctccgcctcgggatgatttcgcgccaagatcacctaggggtggtgggagcaactttgattcatccaacaagctctatgtagggaaccttgcttggggtgtcgacaactcgacactcgagaacctgttcagtgagcagggaaccgtgctcgatgccaaggtcatctacgacagggagagcggcaggtcgaggggttttggttttgtcacctatggctccgctgaagaagtcaacaatgccatatcaaatcttgacggcgttgacctggacggcaggcagatccgagttacagttgcagaatcaaagccaaggcgccaattttga
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| Protein seq | MAATLFSTSLTPTFLPAVPCPKPAPPASACFPCALPPRAALAAPPAPLRRRLSPVAVAVSSEVEEEEGGAESEGEFAEDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVETFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVAESKPRRQF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0024200 | OsARC_07g0024200.02 | Chr07 | 26067329 | 26069318 | + | IsoSeq | ||
| CDS seq | ccccaaaaccttatcttcccaaagcctcatctcctccttcctcccaccacctcgcctcgccatggcggccaccctcttctccacctcgctcacccccaccttcctcccggccgtcccctgccccaagcccgcgccgccggcctcagcctgcttcccctgcgcgctgccgccgcgcgccgcgctagcggcgccaccggcgccgctgcggaggcggctttctcccgtggccgtcgcggtgtcgtcggaggtggaggaggaggagggtggcgcggagtccgagggggagttcgccgaggacctcaaggtgtttgt
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| Protein seq | PQNLIFPKPHLLLPPTTSPRHGGHPLLHLAHPHLPPGRPLPQARAAGLSLLPLRAAAARRASGATGAAAEAAFSRGRRGVVGGGGGGGWRGVRGGVRRGPQGVC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr07 | 26067721 | 26068710 | + | OsARC_07g0024200.02 | OsARC_07g0024200.02,OsARC_07g0024200.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 11.727156 | 0.619102 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0631900 | RBH | 170.955933 | 160.451950 | 23.738211 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g43810 | RBH | 54.566872 | 51.708920 | 2.874298 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0631900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0024360 | RBH | 16.632120 | 9.845211 | 10.231224 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0024410 | RBH | 3.047909 | 1.946563 | 21.884422 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0024280 | RBH | 54.960808 | 8.719491 | 47.713139 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0019460 | RBH | 1.379232 | 0.136993 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0024340 | SBH | 153.817780 | 2.098911 | 76.197052 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0430300 | RBH | 323.18589 | 71.833958 | 15.467638 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0024860 | RBH | 19.932472 | 0.0 | 3.841234 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0441600 | RBH | 251.395317 | 37.756855 | 37.2850875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0024100 | RBH | 3.963773 | 0.146703 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0024250 | RBH | 12.947385 | 1.562067 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0024180 | RBH | 108.571381 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0024350 | RBH | 45.237507 | 0.575224 | 11.012444 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0024110 | RBH | 15.309613 | 8.123934 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G024080 | RBH | 22.480320 | 0.904277 | 13.913924 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0024100 | RBH | 83.944954 | 53.263729 | 21.417736 |
