Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_02g0032460 | OGI:02087520 | 11/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr02:32040148-32041579 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCGGCGGAGCGGGAGCAGCGTTGGATGGCGGGAGCGGCCGCCGCGGCGCTCGCGGCGGAGGATGGCGGAGCGCGGCCCATTCGAGCACGAAGATGGCGGCGCCGAGGCCGCTGACGAGCTTGAGGATGACCTCGCCGTCCTCCTCCCGGACGTAGGACCGCAGCTCGGCGAGGAAGTCGCCGGCCTGCGTGAAGGCGAGCAGCGCGGTGGCGCCCTGGAAGATGGCGGTGACTACGGCGGGAGCGGGAGCAGCGGAGTATACTCACCCAACACCAGGTTCAAGTCGCTCATGTAAGTTTCTCCGCCATGAATCACCTGGTCCATGGCATGCTGTTTGATTGATTTTTGTGACTGTTCTGATGTTTTGTTCGTCTTCTTCTGTTTCCAGTTCCACCTCCTGAAGCAGAGGCAGCTGTTGAAGCAACAACGGGAGCAGCAGCTCGCCGCGGCAACAGCGGCGACGTGGGGCACGCACCGCGCCGGCGTCGGCCCGCCGCTTGGTCTGAACTCGTCCGGCTGGCCGCCGCTGCAGAAGTCCCACCAGCAGGCGTCGTCCGCGGTCGGCATGCGCGCCGTGTTCCTCAGCCCTCCAGGAGGCAAACCGGAACGCACGGGCAACGGCATGCACGCCGTCCTCCTCCCGTCCGCGTGAAGGCGAGCAGCGCGGCGGCGCCCTGGAAGATGGCGATGAGGACGGCGGGAGCGGGAGCAGCGGAGGACGACGAGGACGGAGGTAGCGGCCGCCGCGGCGCTTGCGGTGGAGGACGGCGAGGACATAGAAGCCGGAACCCTCGTGCGGACGGCCGCGGTGAGGTCGGTCCCCTCCTAGAGGGGGACGCGGCGCGCACGGCATGGGCGCGCGAGCGAGGCCAAGATCTGCTGCCGCACGAGGCCCACCCGGTCGGCGACGACGACCCGCAGCTTGCGGACGCCGAGGAAGGGCTGGACGGTGACGGTGCCGAGGTCGACGGTTTGGTCGCCGTCGACGAAGACGACGGGCAGCACGGCCTTGGGCGGCGGCGGCCGCGTGCTGGTGGTTGAGCGGCGCGGCGCGCCCGCGGAGTCAGAAGACGCAACGAGGAAGAAGAGGGAGAAAGGGAATGATATGTGGGGCCCACGTGGGCCCACCATATTTATTTTTTGTCGCTGACATGTAGGCCCATGTGGGCCCCCTATTTTAAAATTATTCTTTTGTGTGCTGCTGACAGGTGGGGCCATAGTTTTTATTGTTTTTTAAGATATAATTGTCACGTAAGCGCCACGCCAATGCCACGTGGGACAGAGACCTAGTCAAACAAGCCACGTAGGCGCCACGTCAACCAAAACCACCTTCAAAACCGCTGAGGGACCACGTTTGCCCGGTTTTCGTAAGTTGGGGGACGGGTCGTACCCGGTTTTGGAGTTTTTTTTGGAAATAATATTATTTTAATGG
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| CDS seq | ATGGCGGAGCGCGGCCCATTCGAGCACGAAGATGGCGGCGCCGAGGCCGCTGACGAGCTTGAGGATGACCTCGCCGTCCTCCTCCCGGACGTAGGACCGCAGCTCGGCGAGGAAGTCGCCGGCCTGCGTGAAGGCGAGCAGCGCGGTGGCGCCCTGGAAGATGGCGGTGACTACGGCGGGAGCGGGAGCAGCGGATTCCACCTCCTGAAGCAGAGGCAGCTGTTGAAGCAACAACGGGAGCAGCAGCTCGCCGCGGCAACAGCGGCGACGTGGGGCACGCACCGCGCCGGCGTCGGCCCGCCGCTTGGTCTGAACTCGTCCGGCTGGCCGCCGCTGCAGAAGTCCCACCAGCAGGCGTCGTCCGCGGTCGGCATGCGCGCCGTGTTCCTCAGCCCTCCAGGAGGCAAACCGGAACGCACGGGCAACGGCATGCACGCCGTCCTCCTCCCGTCCGCGTGA
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| Protein seq | MAERGPFEHEDGGAEAADELEDDLAVLLPDVGPQLGEEVAGLREGEQRGGALEDGGDYGGSGSSGFHLLKQRQLLKQQREQQLAAATAATWGTHRAGVGPPLGLNSSGWPPLQKSHQQASSAVGMRAVFLSPPGGKPERTGNGMHAVLLPSA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_02g0032460 | OsIR64_02g0032460.01 | Chr02 | 32040209 | 32040799 | + | NAM | ||
| CDS seq | ATGGCGGAGCGCGGCCCATTCGAGCACGAAGATGGCGGCGCCGAGGCCGCTGACGAGCTTGAGGATGACCTCGCCGTCCTCCTCCCGGACGTAGGACCGCAGCTCGGCGAGGAAGTCGCCGGCCTGCGTGAAGGCGAGCAGCGCGGTGGCGCCCTGGAAGATGGCGGTGACTACGGCGGGAGCGGGAGCAGCGGATTCCACCTCCTGAAGCAGAGGCAGCTGTTGAAGCAACAACGGGAGCAGCAGCTCGCCGCGGCAACAGCGGCGACGTGGGGCACGCACCGCGCCGGCGTCGGCCCGCCGCTTGGTCTGAACTCGTCCGGCTGGCCGCCGCTGCAGAAGTCCCACCAGCAGGCGTCGTCCGCGGTCGGCATGCGCGCCGTGTTCCTCAGCCCTCCAGGAGGCAAACCGGAACGCACGGGCAACGGCATGCACGCCGTCCTCCTCCCGTCCGCGTGA
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| Protein seq | MAERGPFEHEDGGAEAADELEDDLAVLLPDVGPQLGEEVAGLREGEQRGGALEDGGDYGGSGSSGFHLLKQRQLLKQQREQQLAAATAATWGTHRAGVGPPLGLNSSGWPPLQKSHQQASSAVGMRAVFLSPPGGKPERTGNGMHAVLLPSA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_02g0032460 | OsIR64_02g0032460.02 | Chr02 | 32040148 | 32041579 | + | IsoSeq | ||
| CDS seq | GGCGGAGCGGGAGCAGCGTTGGATGGCGGGAGCGGCCGCCGCGGCGCTCGCGGCGGAGGATGGCGGAGCGCGGCCCATTCGAGCACGAAGATGGCGGCGCCGAGGCCGCTGACGAGCTTGAGGATGACCTCGCCGTCCTCCTCCCGG |
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| Protein seq | GGAGAALDGGSGRRGARGGGWRSAAHSSTKMAAPRPLTSLRMTSPSSSR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr02 | 32040403 | 32040536 | + | OsIR64_02g0032460.02 | OsIR64_02g0032460.01,OsIR64_02g0032460.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.072476 | 0.000000 | 0.167191 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0738300 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g29700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0738300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0011740 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0011960 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0032960 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0032550 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0032680 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0258100 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0011760 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0534800 | RBH | 0.196045 | 1.8232305 | 0.047529 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0011500 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0032520 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0032700 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0032330 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G033020 | RBH | 0.0 | 1.423455 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0032750 | RBH | 0.0 | 0.0 | 0.000000 |
