Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_01g0023450 | OGI:01011440 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr01:25220691-25221308 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATGTGGAAGAGTTTGAGTCACCCACCAGTCTCCTTGCTTTGGCATCATGACCCTTGATATTCTTCATCTCGTACCGCGTAAAGAAATTATAAAGGTCCTTCATCACAAAACCAACCTCGTCTAACTCATCGTGGTTATTCTCCATAACCTCCATGACTTGAAAGGGCCTAAGGCCACTCATGCGAAGCTCGACCGCTTGGGCTTTCTTAGAATCACTCATCACACGATGAACTCCTAAAAAAGCAACATGGTCTGGATTTGCAAGTTCGTGCGTATGTTGGTTATCAAACTCCTTAACAAACCACACCCCCTTCTCCTCGTTCCGCTCAATCTCAAGCTTAGCTAAGCAACCGCAGCGGGTCAGTGCCCGTGGCTCCCTTATCCGCTCTGTCCTCTCAAAGTGCTTCAACTCCCTGTACCCTTCACATGAGCATACGAATTGCCTCCATATAATTTCACCGTCCTTCCGTTTAAGGTTGTTTTTCCTCACACTGAAACCCTTCCCCTTTGCATAGTCTAAATAGAATTTGTAACCTTCCTCCTCGCTTGAAAAAACCACAGTACCCATCATTTTATACTCTTCCTGATCCTCTAGGCTCACATAGCTCGAAGTCAT
More
|
||||||||||
| CDS seq | ATGACTTCGAGCTATGTGAGCCTAGAGGATCAGGAAGAGTATAAAATGATGGGTACTGTGGTTTTTTCAAGCGAGGAGGAAGGTTACAAATTCTATTTAGACTATGCAAAGGGGAAGGGTTTCAGTGTGAGGAAAAACAACCTTAAACGGAAGGACGGTGAAATTATATGGAGGCAATTCGTATGCTCATGTGAAGGGTACAGGGAGTTGAAGCACTTTGAGAGGACAGAGCGGATAAGGGAGCCACGGGCACTGACCCGCTGCGGTTGCTTAGCTAAGCTTGAGATTGAGCGGAACGAGGAGAAGGGGGTGTGGTTTGTTAAGGAGTTTGATAACCAACATACGCACGAACTTGCAAATCCAGACCATGTTGCTTTTTTAGGAGTTCATCGTGTGATGAGTGATTCTAAGAAAGCCCAAGCGGTCGAGCTTCGCATGAGTGGCCTTAGGCCCTTTCAAGTCATGGAGGTTATGGAGAATAACCACGATGAGTTAGACGAGGTTGGTTTTGTGATGAAGGACCTTTATAATTTCTTTACGCGGTACGAGATGAAGAATATCAAGGGTCATGATGCCAAAGCAAGGAGACTGGTGGGTGACTCAAACTCTTCCACATGA
More
|
||||||||||
| Protein seq | MTSSYVSLEDQEEYKMMGTVVFSSEEEGYKFYLDYAKGKGFSVRKNNLKRKDGEIIWRQFVCSCEGYRELKHFERTERIREPRALTRCGCLAKLEIERNEEKGVWFVKEFDNQHTHELANPDHVAFLGVHRVMSDSKKAQAVELRMSGLRPFQVMEVMENNHDELDEVGFVMKDLYNFFTRYEMKNIKGHDAKARRLVGDSNSST |
||||||||||
| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_01g0023450 | OsIR64_01g0023450.01 | Chr01 | 25220691 | 25221308 | - | NAM | ||
| CDS seq | ATGACTTCGAGCTATGTGAGCCTAGAGGATCAGGAAGAGTATAAAATGATGGGTACTGTGGTTTTTTCAAGCGAGGAGGAAGGTTACAAATTCTATTTAGACTATGCAAAGGGGAAGGGTTTCAGTGTGAGGAAAAACAACCTTAAACGGAAGGACGGTGAAATTATATGGAGGCAATTCGTATGCTCATGTGAAGGGTACAGGGAGTTGAAGCACTTTGAGAGGACAGAGCGGATAAGGGAGCCACGGGCACTGACCCGCTGCGGTTGCTTAGCTAAGCTTGAGATTGAGCGGAACGAGGAGAAGGGGGTGTGGTTTGTTAAGGAGTTTGATAACCAACATACGCACGAACTTGCAAATCCAGACCATGTTGCTTTTTTAGGAGTTCATCGTGTGATGAGTGATTCTAAGAAAGCCCAAGCGGTCGAGCTTCGCATGAGTGGCCTTAGGCCCTTTCAAGTCATGGAGGTTATGGAGAATAACCACGATGAGTTAGACGAGGTTGGTTTTGTGATGAAGGACCTTTATAATTTCTTTACGCGGTACGAGATGAAGAATATCAAGGGTCATGATGCCAAAGCAAGGAGACTGGTGGGTGACTCAAACTCTTCCACATGA
More
|
|||||||
| Protein seq | MTSSYVSLEDQEEYKMMGTVVFSSEEEGYKFYLDYAKGKGFSVRKNNLKRKDGEIIWRQFVCSCEGYRELKHFERTERIREPRALTRCGCLAKLEIERNEEKGVWFVKEFDNQHTHELANPDHVAFLGVHRVMSDSKKAQAVELRMSGLRPFQVMEVMENNHDELDEVGFVMKDLYNFFTRYEMKNIKGHDAKARRLVGDSNSST
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g23230 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0852650 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0012010 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0040020 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0411700 | RBH | 0 | 0.038596 | 0.000421 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0390500 | RBH | 0.040957 | 0 | 0.0112565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0011660 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0040000 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0040240 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0040080 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
