Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0011660 | OGI:01011440 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:14847046-14847517 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tttttttttttgttcttatgaggtataaaggacataaggttatagttgggtgctttttcggtttgttttttgtacttttccgtaggtgaggtctgacataatgtcttcaagctatgtgagcttagaggatcaggaagagtataaaatgatgggtactgtggttttttcaagcaaggaggaaggttacaaattctatgtagactatgctaaggggaagggtttcagtgtgaggaaaacaacttgaagcagaaggacggtgagattatatggaggcaattcgtatgctcatgtgaagggtacagggagttgaagcactttgagaggacagaccggaaaagggagccacgggcactgacctgctgtggttgcttagctaagcttgagattgagcggaacgaggagtttgataaccaacatacgcacgaacttgcaaatcctgaccatgttgcttttttaggagttcatcatgtga
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| CDS seq | atgtcttcaagctatgtgagcttagaggatcaggaagagtataaaatgatgggtactgtggttttttcaagcaaggaggaaggttacaaattctattgtgaggaaaacaacttgaagcagaaggacggtgagattatatggaggcaattcgtatgctcatgtgaagggtacagggagttgaagcactttgagaggacagaccggaaaagggagccacgggcactgacctgctgtggttgcttagctaagcttgagattgagcggaacgaggagtttgataaccaacatacgcacgaacttgcaaatcctgaccatgagttcatcatgtga |
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| Protein seq | MSSSYVSLEDQEEYKMMGTVVFSSKEEGYKFYCEENNLKQKDGEIIWRQFVCSCEGYRELKHFERTDRKREPRALTCCGCLAKLEIERNEEFDNQHTHELANPDHEFIM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0011660 | OsLima_12g0011660.01 | Chr12 | 14847046 | 14847517 | + | NAM | ||
| CDS seq | atgtcttcaagctatgtgagcttagaggatcaggaagagtataaaatgatgggtactgtggttttttcaagcaaggaggaaggttacaaattctattgtgaggaaaacaacttgaagcagaaggacggtgagattatatggaggcaattcgtatgctcatgtgaagggtacagggagttgaagcactttgagaggacagaccggaaaagggagccacgggcactgacctgctgtggttgcttagctaagcttgagattgagcggaacgaggagtttgataaccaacatacgcacgaacttgcaaatcctgaccatgagttcatcatgtga
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| Protein seq | MSSSYVSLEDQEEYKMMGTVVFSSKEEGYKFYCEENNLKQKDGEIIWRQFVCSCEGYRELKHFERTDRKREPRALTCCGCLAKLEIERNEEFDNQHTHELANPDHEFIM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g11870 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0012010 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0005670 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0011900 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0213800 | RBH | 0 | 0.002271 | 0.1468895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0023450 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0237700 | RBH | 0 | 0.155567 | 0.080735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0012060 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0011620 | RBH | 0.0 | 0.0 | 0.0 |
