Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsGoSa_11g0020480 OGI:11069230 | 5/16 GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) Chr11:26812300-26815073
Gene Symbol RLCK340, OsRLCK340
DNA seq

tcaaaagaaggagcgatgaacccaaaccatctgagagtaagtcgaactatgcatcgattgaatctgaggcagcacttcactggctaatggaggacactgtttccctgctggatcactgaatctcaagcccaagaacagcatcctagctgcaccttccactggtgtttggcaccttttcagctcaggatccacaatccctttcaggatttctctcttctgcagaatgctcttcctttggaattcactatcatctcccagtttctgtgccaaaaaatctctcagaccctttgcatctgaatgccctgtaactagctgaagtagtatgatacccagagctgatacatctgtctgaatctgaatcttgcagtcatcaatgtccatgaaagtccgaaagattccctgaataactttttcaccgggcattccctgaataacttcctcaatggcggatgatacatgttttgtcggatgtaacagagtggaaattccaaagtttctgagcttgcatatattatctgcagtgaagtagacgtttcttggtttaaggtcaccgtgaatgattggcttgtgcttatttctgtggaggtaatcgagagctgagaatatgctggctgctgttgtaaccctgtctccccaagtaaaagatttctttcctctaaaagtaaaagatttcttgagctttatgtcagtgaggcgatcttccagtgtgtcgggtaaaagctcgtagacaagtgcacgccttagtgagcatgctcctataaggtttgccaggttcttgtgctggatgcttctgaagatttcaagctgcattttcagagatatagtcagaaaaacagaagaatatataatatctataacttgcatgaaaatatacagctattgcatattgaaatgttatatatgcaatgtcaaattattgctgtcattatttttcaacaattttcaatgggaaacttcagtcacattgggttattgtctttgtttccttccaatcttaaatgtaatgatgcgtaagccttatactcctttcctaaaaaatattgggttattgatgatgcatttcatccattactagatgcacctgagcaaaaatgcagggcagaatgcatactatattattattgtgtgttcaattgtacttttttttctagataatgagtgttcaattgtacttaccgctcgagtaaactcttccatgcttggtgaagctccctcttttggaatcatgatagcaccgaattttgacttgtacacactataatctgtcgtttcatggagccgcatcgctggtttgctgaccgcagcatcgatatctgaagctttgaactcggtgaacttcaccttgccactagagctggcaggtttaaccttattctgctcatggtgctcatggttcttctggttagcaaatgcactttgaatggataaaatgtttattggttctattctattaatatatgaatatcgtggtaaatgcttacttctggaatggaaatgaggccttcaggcttcttcttgaattgcagatgaggtgctggctttgccctttattatcaatcatgatcacacaatcagaaaagtgccatagaaaaaaattaacagaatggtattttctgatcaaagatttgctgcgctatggtaattaaaccacaagttaagttgcaagaaagaagagagcatgtagcctagtggttacagtgacctgagtagtaccccaaggtcctgagttcaaatctcctatggagcgaatttcagattgggttgtttgcggggctaagttccctatttcaatggccgtatatatccggttggatgtagaggccgggcagaaaatacccttctctaaaaaaaaaaaaaagaaagaagagagccaacaagtgaatgggagaaatgtgccaaactacaattacaaaacgggcaccctgaatttcacccaagtttgaccaggaaaataatcgtatataatataaattcaagtgaaacaaaacagaacattcagattgcgtttttgacaaattcttgaagtcactttacctggattgctgaccaatgacatttttttggtagcccccttgctgaattgacggccttggtttgctaacatgaacttcaagttgagcaagaatgaacaaaagaaggcaaacaagaaatgaagggaggcaatgagccaaaccacagacaaggtacgagtatcacaaattaacattgtaaagcgttacctactgaaggagtttataaaactagtatcaatgtaccttacaaccggcttagcaatggctggttttggtggcttttgagttttgaaggtaacaggtttcttgtaagttcctccatggagccatgatgatggtctgccatgatcaactattagtatgagtatcaagaaatctaggagcaggaaagatacgccaaaatactgtgacagattaatggagaaggcaatgctccaagaccatcctggtaccttacagttggctgaacaactgcttgtttttggtggctcctaacaccagtgctcttttggtagcctcctccatgaatcgcggtagtagttctgctatggttgaacatgagttgaatatcagaagagaatgcaaagaagaatccaaaatgcagtatccaagtgagacagtttctctaaggtatccataccttctttctggctgagaagcaccaagagttttgttgtctttgagaggagctggattttggtggcctactcctctgtagagcccaaccggctgcagtctgcctctctgtagcattgctgccat

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CDS seq

atggcagcaatgctacagagaggcagactgcagccggttgggctctacagaggagtaggccaccaaaatccagctcctctcaaagacaacaaaactcttggtgcttctcagccagaaagaagaactactaccgcgattcatggaggaggctaccaaaagagcactggtgttaggagccaccaaaaacaagcagttgttcagccaactgtaagaccatcatcatggctccatggaggaacttacaagaaacctgttaccttcaaaactcaaaagccaccaaaaccagccattgctaagccggttgtaagaatagaaccaataaacattttatccattcaaagtgcatttgctaaccagaagaaccatgagcaccatgagcagaataaggttaaacctgccagctctagtggcaaggtgaagttcaccgagttcaaagcttcagatatcgatgctgcggtcagcaaaccagcgatgcggctccatgaaacgacagattatagtgtgtacaagtcaaaattcggtgctatcatgattccaaaagagggagcttcaccaagcatggaagagtttactcgagcgcttgaaatcttcagaagcatccagcacaagaacctggcaaaccttataggagcatgctcactaaggcgtgcacttgtctacgagcttttacccgacacactggaagatcgcctcactgacataaagctcaagaaatcttttacttttagaggaaagaaatcttttacttggggagacagggttacaacagcagccagcatattctcagctctcgattacctccacagaaataagcacaagccaatcattcacggtgaccttaaaccaagaaacgtctacttcactgcagataatatatgcaagctcagaaactttggaatttccactctgttacatccgacaaaacatgtatcatccgccattgaggaagttattcagggaatgcccggtgaaaaagttattcagggaatctttcggactttcatggacattgatgactgcaagattcagattcagacagatgtatcagctctgggtatcatactacttcagctagttacagggcattcagatgcaaagggtctgagagattttttggcacagaaactgggagatgatagtgaattccaaaggaagagcattctgcagaagagagaaatcctgaaagggattgtggatcctgagctgaaaaggtgccaaacaccagtggaaggtgcagctaggatgctgttcttgggcttgagattcagtgatccagcagggaaacagtgtcctccattagccagtgaagtgctgcctcagattcaatcgatgcatagttcgacttactctcagatggtttgggttcatcgctccttcttttga

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Protein seq

MAAMLQRGRLQPVGLYRGVGHQNPAPLKDNKTLGASQPERRTTTAIHGGGYQKSTGVRSHQKQAVVQPTVRPSSWLHGGTYKKPVTFKTQKPPKPAIAKPVVRIEPINILSIQSAFANQKNHEHHEQNKVKPASSSGKVKFTEFKASDIDAAVSKPAMRLHETTDYSVYKSKFGAIMIPKEGASPSMEEFTRALEIFRSIQHKNLANLIGACSLRRALVYELLPDTLEDRLTDIKLKKSFTFRGKKSFTWGDRVTTAASIFSALDYLHRNKHKPIIHGDLKPRNVYFTADNICKLRNFGISTLLHPTKHVSSAIEEVIQGMPGEKVIQGIFRTFMDIDDCKIQIQTDVSALGIILLQLVTGHSDAKGLRDFLAQKLGDDSEFQRKSILQKREILKGIVDPELKRCQTPVEGAARMLFLGLRFSDPAGKQCPPLASEVLPQIQSMHSSTYSQMVWVHRSFF

Function U-box domain-containing protein 51 [UniProtKB/Swiss-Prot:Q9FKG5]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsGoSa_11g0020480 OsGoSa_11g0020480.01 Chr11 26812300 26815073 - NAM
CDS seq

atggcagcaatgctacagagaggcagactgcagccggttgggctctacagaggagtaggccaccaaaatccagctcctctcaaagacaacaaaactcttggtgcttctcagccagaaagaagaactactaccgcgattcatggaggaggctaccaaaagagcactggtgttaggagccaccaaaaacaagcagttgttcagccaactgtaagaccatcatcatggctccatggaggaacttacaagaaacctgttaccttcaaaactcaaaagccaccaaaaccagccattgctaagccggttgtaagaatagaaccaataaacattttatccattcaaagtgcatttgctaaccagaagaaccatgagcaccatgagcagaataaggttaaacctgccagctctagtggcaaggtgaagttcaccgagttcaaagcttcagatatcgatgctgcggtcagcaaaccagcgatgcggctccatgaaacgacagattatagtgtgtacaagtcaaaattcggtgctatcatgattccaaaagagggagcttcaccaagcatggaagagtttactcgagcgcttgaaatcttcagaagcatccagcacaagaacctggcaaaccttataggagcatgctcactaaggcgtgcacttgtctacgagcttttacccgacacactggaagatcgcctcactgacataaagctcaagaaatcttttacttttagaggaaagaaatcttttacttggggagacagggttacaacagcagccagcatattctcagctctcgattacctccacagaaataagcacaagccaatcattcacggtgaccttaaaccaagaaacgtctacttcactgcagataatatatgcaagctcagaaactttggaatttccactctgttacatccgacaaaacatgtatcatccgccattgaggaagttattcagggaatgcccggtgaaaaagttattcagggaatctttcggactttcatggacattgatgactgcaagattcagattcagacagatgtatcagctctgggtatcatactacttcagctagttacagggcattcagatgcaaagggtctgagagattttttggcacagaaactgggagatgatagtgaattccaaaggaagagcattctgcagaagagagaaatcctgaaagggattgtggatcctgagctgaaaaggtgccaaacaccagtggaaggtgcagctaggatgctgttcttgggcttgagattcagtgatccagcagggaaacagtgtcctccattagccagtgaagtgctgcctcagattcaatcgatgcatagttcgacttactctcagatggtttgggttcatcgctccttcttttga

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Protein seq

MAAMLQRGRLQPVGLYRGVGHQNPAPLKDNKTLGASQPERRTTTAIHGGGYQKSTGVRSHQKQAVVQPTVRPSSWLHGGTYKKPVTFKTQKPPKPAIAKPVVRIEPINILSIQSAFANQKNHEHHEQNKVKPASSSGKVKFTEFKASDIDAAVSKPAMRLHETTDYSVYKSKFGAIMIPKEGASPSMEEFTRALEIFRSIQHKNLANLIGACSLRRALVYELLPDTLEDRLTDIKLKKSFTFRGKKSFTWGDRVTTAASIFSALDYLHRNKHKPIIHGDLKPRNVYFTADNICKLRNFGISTLLHPTKHVSSAIEEVIQGMPGEKVIQGIFRTFMDIDDCKIQIQTDVSALGIILLQLVTGHSDAKGLRDFLAQKLGDDSEFQRKSILQKREILKGIVDPELKRCQTPVEGAARMLFLGLRFSDPAGKQCPPLASEVLPQIQSMHSSTYSQMVWVHRSFF

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0618300 SBH 0.000000 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g40380 RBH 0.000000 0.0 0.037124
Nipponbare | IRGSP 1.0 | RAP-db Os11g0618300 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0020470 RBH 0.0 0.0 0.000000
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0020530 SBH 0.0 0.996001 0.638272
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0020320 SBH 0.0 0.000000 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0019870 SBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0020380 SBH 0.0 0.000000 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0362000 SBH 0.1143245 0.6414345 0.560674
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0020860 SBH 0.0 0.367912 0.000000
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0380400 SBH 0.0302185 2.87423 0.1164835
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0020670 SBH 0.0 0.170812 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0020820 SBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0020460 SBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0020120 SBH 0.0 0.0 0.103376
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0020230 SBH 0.0 1.023329 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G020230 RBH 0.0 0.0 0.000000
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0020600 RBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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