Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_11g0020470 | OGI:11069230 | 5/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr11:24506724-24510751 | ||||||||
| Gene Symbol | RLCK340, OsRLCK340 | ||||||||||
| DNA seq | TCAAAAGAAGGAGCGATGAACCCAAACCATCTGAGAGTAAGTCGTACTATGCATCGATTGAATCTGAGGCAGCACTTCACTGGCTAATTGAGGACACTGTTTCCCTGCTGGATCACTGAATCTCAAGCCCAAGAACAGCATCCTAGCTGCACCTTCCACTGGTGTTTGACACCTTTTCAGCTCAGGATCCACAATCCCTTTCAGGATTTCTCTCTTCTGCAGAATGCTCTTCCTTTGGAATTCACTATCATCTCCCAGTTTCTGTGCCACAAAATCTCTCAGACTCTTTGCATCTGAATGCCCTGTAACTAGCTGAAGTAGTATGATACCCAGAGCTGATACATCTGTCTGAATCTGAATCTTGCAGTCATCAATGTCCATGAAAGTCCGAAAGATTCCCTGAATAACTTTTTCACCGGGCATTCCCTGAATAACTTCCTCAATGGCGGATGGTACATGTTTTGTTGGATGTAACAGAGTGGAAATTCCAAAGTTTCTGAGCTTGCATATATTATCTGCAGTGAAGTGGACGTTTCTTGGTTTAAGGTCACCGTGAATGATTGGCTTGTGATTATTTCTGTGGAGGTAATCGAGAGCTGAGCATATGCTGGCTGCTGTTGTAACCCTGTCTCTCCAAGTAAAAGATTTCTTTCCTCTAAACGTAAAAGATTTCTTGATGTCAGTGAGGCGATCTTCCAGTGTGTCAGGTAAAAGCTCGTAGACAAGTGCACGCCTTGGTGAGCATGCTCCTACAAGGTTTGCCAGGTTCTTGTGCTGGATGCTTCTGAAGATTTCAAGCTGCATTTTCAGAGATATAGTCAGAAAAACAGAAGAATATATAATATCTATAACTTGCATGAAGATATACAGCTATTGCATATTGAAATGTTATACATGCAATGTCAAATTATTGCTGTCATTATTTTCAACAATTTTCAATGGGAAACTTCAGTCACATTGGGTTATTGTCTTTGTTTCCTTCCAATCTTAAATATGTAATGATGCGTAAGCTTTTTACGCCTTTCCTGAAAAATATTGGGTTATTGATGATGCATTTCATCCATTACTAGATGCACCTGAGCAAAAATGCAGGGCAGAATGCATACTATATTTTTTTTTGCGGGGAAAAAAGTGTATTACTCATTCAAAACGTCCTCACAGACTAGCTGTGAAATGAAATTACAACTTCCTTCCGGCCAAAGCCCAGAAATTGAATCGGCCCTAGCCCTATTAGCTAAAAGGTGGCTAACACCGTTTTGGCTACGATGGATCTTGGTAACCAACACTTCCCTACGCTCTGACAACAGGCGTTTAATCTCCTGGACTAAATTAGCTAATTCAGACAGATCCCTATTCCCTTCCTTCAGAAGATTGACTAGCGAAACACAATCTGTTTCAATCAAGATAGGGCGCATAGTCCACTGCAGGGCCAAAATCAATCCCTCCATGCAAGCTCGGATTTCTGCCTCCAGGGCATTCTTGCAGCTATCCAGGGACTTACATGCTGCAAAAACTGTACTACCACTGTTGTCCCGTAGAATCATACCGATACCTCCCTTCCCACGATCAGCATCAAATGAGCCATCTACATTAAGTTTCATCCAGCCCAGCCTCGGCTTCTCCCAGTGCAAACGGGTCGATGCAGTAGGAGGACCATCTGGTCCTCTTCTTCTAAGTGCACTTATAACAGATCTGCTAACAACAGTTTTACCTTTTTCCAGATCAGCGTGGGGGTATTCCCTGATTTGGAATAGAGTAGCAATATAACTTTCCAGGAATCTTTTGGAGACTTCCAGCGGAGGAGGCGGCTTATTATGTGTGATTTCATTACGCACATACCAGTTTCGCCAGAGAGTTAATAAAAACATCTCATGTTCTTCGGTTGGTAGATATTCCAAACAATCAAACAGCCAGTAATTGCCGAATTGGAAATTCACCAAATCAAGCGACAAGTTACCTGACTGTACCATATCCGACAACAAGGCACTGGCTCGGGGACATTTGCAGAGAGCGTGTACAGAATTCTCCACCTCTCTGTTGCAGATGATACAGATATCAGAGTTTACCAACTTCCTTTTCCTTTTGTTGTCCATGGTAGCTAAACAATTGGAGGCCACTTTCCAGGCAAAGATTTTAATCTTCTGTGGGAGCTTACACTTCCAAATTAAATCCCAGGATTTGCGGGAATGCAAAGCAGAGGAACTTGAGGATCCTTCAGTATTTGCCAGCCTACAGGCAAGATTATAAGCACTCCGGACTGAGAACCGCCCAAACTTGTCAAGGTGCCAAGCTAGAAAGTCTTCTTCCTGGCGGGGAGAAAGACAAATCGATAAGATTAACTCAGTGTCTATGTTCAGGAAGCACCTCCTGATCTGTGCAACATCCCAGGTACCATCTTGCCCTATTAAATCAGAGACCCATTTCAGTCTGCAATTTCCTCTCATCGTCACTGGTCTTCTCGAGTGATCCCGAGGAATCCAAGGGTCTCTCCACATGCGTATAGACTGACCATTACCGACCCTCCAAATTATCCCCTTCTTCAGTAACTCCAACCCATAGATGATAGCCCGCCAGGTCGGGGAAGAAAGCATACTATATTATTATTGTGTGTTCAATGGTACTTCTTTTCTAGATAATGAGTGTTCAATTGTACTTACAGCTCAAGTAAACTCTTCCATGCTTGGTGAAGCTCCCTCTTTTGGAAGCATGATAGCACCGAATTTTGACTTGTACACACTATAATCTTTCATTTCATGGAGCCGCATCACTGGTTTGCTGACCGCAGCATCGATATCTGAAGTTTTGAACTCGGTGAACTTCACCTTGCCACTAGAGCTGGCAGGTTTAACCTTATTCTGCTCATGGTGCTCATGGTTCTTCTGGTTAGCAAATGCATTTTGAATAAGATGTTTTCTGGTTCTATTCTATTAAGATATGGATATCGTGGTTTTATGAAATGCTTACTTCTGGAATGGAAATGGGGCCTTCAGGCTTCCTAAATTGCAGATGAGGTGCTGGCTTTGTCCTTTATTATCAATCATGATCACACAATCAGAGAAGTGCCATAGAAAAAATTAACAGAACGGTATTTTCTGATCAAAGATTTGCTGTGCTATGGTAATTAAACAAGTTAAGTTGCAAGAAAGAAGACAGCCAAGAAGTGAATGGGAGAAATGTGCCAAACTACATACAAAACAGGCACCCTGAATTTCACCCCAAGTTTGGCCAGAAAAATAATCGTATATAATCTAAATTCAAGTGAAACAAGACAAAAACATTCAAATTACGTTTTTGACAAATTCTTGAAGTCACTTTACCTGGATTGCGGACCAATGACATTTTTTTGGTAGCCCCCTTGCTGAATTGACGGCCTTGGTCTGCTAACATGAACTTCAAGTTGAGCAAGAATGAACAAAAGAAGGCAAACAAGAAATGAAGGGAGGCAATGAGCCAAACCACAGACAAGGTACTAGTATCACAAATTAACATTGTAAAGCGTTACCTACTGAAGAGAGTGTATAAAACTAGTATCAATGTACCTTACAACCGGCTTAGCAATGGCTGGTTTTGGTGGCTTTTGAGTTTTGAAGGTAACAGGTTTCCTGTAAGTTCCTCCAGGGAGCCATGATGATGGTCTGCCATGATCAACTATTACTATGAGTATCAAGAAATCTAGGAGCAGGAAAGATACGCCAAAATACTGTGACAGATTAATGGAGAAGGCAATGCTCCAAGACCATCTTAGTACCTTACAGTTGGCTGAACAACTGCTTGTTTTTGGTGGCTCCTAACACCAGTGCTCTTTTGGTAGCCTCCTCCATGAATCGTGGTAGTAGTTCTGCTATGGTTGAACATGAGTTGAATATCAGAAGCGAATGCAAAGAAGAATCCAAAATGCAGTATCCAAGTGAGAGAGTTTCTCTAAGGTATCCATACCTTCTTGCTGGCTGAGGAGCTGGATTTTGGTGGCCTACTCCTCTGTAGAGCCCAGCCGGCTGCAGTCTGCCTCTCTGTTGCATTGCTGCCAT
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| CDS seq | ATGGCAGCAATGCAACAGAGAGGCAGACTGCAGCCGGCTGGGCTCTACAGAGGAGTAGGCCACCAAAATCCAGCTCCTCAGCCAGCAAGAAGCAGAACTACTACCACGATTCATGGAGGAGGCTACCAAAAGAGCACTGGTGTTAGGAGCCACCAAAAACAAGCAGTTGTTCAGCCAACTGTAAGACCATCATCATGGCTCCCTGGAGGAACTTACAGGAAACCTGTTACCTTCAAAACTCAAAAGCCACCAAAACCAGCCATTGCTAAGCCGGTTGTAAGACCAAGGCCGTCAATTCAGCAAGGGGGCTACCAAAAAAATGTCATTGGTCCGCAATCCAGGACAAAGCCAGCACCTCATCTGCAATTTAGGAAGCCTGAAGGCCCCATTTCCATTCCAGAAAATAGAACCAGAAAACATCTTATTCAAAATGCATTTGCTAACCAGAAGAACCATGAGCACCATGAGCAGAATAAGGTTAAACCTGCCAGCTCTAGTGGCAAGGTGAAGTTCACCGAGTTCAAAACTTCAGATATCGATGCTGCGCTTGAAATCTTCAGAAGCATCCAGCACAAGAACCTGGCAAACCTTGTAGGAGCATGCTCACCAAGGCGTGCACTTGTCTACGAGCTTTTACCTGACACACTGGAAGATCGCCTCACTGACATCAAGAAATCTTTTACGTTTAGAGGAAAGAAATCTTTTACTTGGAGAGACAGGGTTACAACAGCAGCCAGCATATGCTCAGCTCTCGATTACCTCCACAGAAATAATCACAAGCCAATCATTCACGGTGACCTTAAACCAAGAAACGTCCACTTCACTGCAGATAATATATGCAAGCTCAGAAACTTTGGAATTTCCACTCTGTTACATCCAACAAAACATGTACCATCCGCCATTGAGGAAGTTATTCAGGGAATGCCCGGTGAAAAAGTTATTCAGGGAATCTTTCGGACTTTCATGGACATTGATGACTGCAAGATTCAGATTCAGACAGATGTATCAGCTCTGGGTATCATACTACTTCAGCTAGTTACAGGGCATTCAGATGCAAAGAGTCTGAGAGATTTTGTGGCACAGAAACTGGGAGATGATAGTGAATTCCAAAGGAAGAGCATTCTGCAGAAGAGAGAAATCCTGAAAGGGATTGTGGATCCTGAGCTGAAAAGGTGTCAAACACCAGTGGAAGGTGCAGCTAGGATGCTGTTCTTGGGCTTGAGATTCAGTGATCCAGCAGGGAAACAGTGTCCTCAATTAGCCAGTGAAGTGCTGCCTCAGATTCAATCGATGCATAGTACGACTTACTCTCAGATGGTTTGGGTTCATCGCTCCTTCTTTTGA
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| Protein seq | MAAMQQRGRLQPAGLYRGVGHQNPAPQPARSRTTTTIHGGGYQKSTGVRSHQKQAVVQPTVRPSSWLPGGTYRKPVTFKTQKPPKPAIAKPVVRPRPSIQQGGYQKNVIGPQSRTKPAPHLQFRKPEGPISIPENRTRKHLIQNAFANQKNHEHHEQNKVKPASSSGKVKFTEFKTSDIDAALEIFRSIQHKNLANLVGACSPRRALVYELLPDTLEDRLTDIKKSFTFRGKKSFTWRDRVTTAASICSALDYLHRNNHKPIIHGDLKPRNVHFTADNICKLRNFGISTLLHPTKHVPSAIEEVIQGMPGEKVIQGIFRTFMDIDDCKIQIQTDVSALGIILLQLVTGHSDAKSLRDFVAQKLGDDSEFQRKSILQKREILKGIVDPELKRCQTPVEGAARMLFLGLRFSDPAGKQCPQLASEVLPQIQSMHSTTYSQMVWVHRSFF |
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| Function | U-box domain-containing protein 33 [UniProtKB/Swiss-Prot:Q8GUH1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_11g0020470 | OsAzu_11g0020470.01 | Chr11 | 24506724 | 24510751 | - | NAM | ||
| CDS seq | ATGGCAGCAATGCAACAGAGAGGCAGACTGCAGCCGGCTGGGCTCTACAGAGGAGTAGGCCACCAAAATCCAGCTCCTCAGCCAGCAAGAAGCAGAACTACTACCACGATTCATGGAGGAGGCTACCAAAAGAGCACTGGTGTTAGGAGCCACCAAAAACAAGCAGTTGTTCAGCCAACTGTAAGACCATCATCATGGCTCCCTGGAGGAACTTACAGGAAACCTGTTACCTTCAAAACTCAAAAGCCACCAAAACCAGCCATTGCTAAGCCGGTTGTAAGACCAAGGCCGTCAATTCAGCAAGGGGGCTACCAAAAAAATGTCATTGGTCCGCAATCCAGGACAAAGCCAGCACCTCATCTGCAATTTAGGAAGCCTGAAGGCCCCATTTCCATTCCAGAAAATAGAACCAGAAAACATCTTATTCAAAATGCATTTGCTAACCAGAAGAACCATGAGCACCATGAGCAGAATAAGGTTAAACCTGCCAGCTCTAGTGGCAAGGTGAAGTTCACCGAGTTCAAAACTTCAGATATCGATGCTGCGCTTGAAATCTTCAGAAGCATCCAGCACAAGAACCTGGCAAACCTTGTAGGAGCATGCTCACCAAGGCGTGCACTTGTCTACGAGCTTTTACCTGACACACTGGAAGATCGCCTCACTGACATCAAGAAATCTTTTACGTTTAGAGGAAAGAAATCTTTTACTTGGAGAGACAGGGTTACAACAGCAGCCAGCATATGCTCAGCTCTCGATTACCTCCACAGAAATAATCACAAGCCAATCATTCACGGTGACCTTAAACCAAGAAACGTCCACTTCACTGCAGATAATATATGCAAGCTCAGAAACTTTGGAATTTCCACTCTGTTACATCCAACAAAACATGTACCATCCGCCATTGAGGAAGTTATTCAGGGAATGCCCGGTGAAAAAGTTATTCAGGGAATCTTTCGGACTTTCATGGACATTGATGACTGCAAGATTCAGATTCAGACAGATGTATCAGCTCTGGGTATCATACTACTTCAGCTAGTTACAGGGCATTCAGATGCAAAGAGTCTGAGAGATTTTGTGGCACAGAAACTGGGAGATGATAGTGAATTCCAAAGGAAGAGCATTCTGCAGAAGAGAGAAATCCTGAAAGGGATTGTGGATCCTGAGCTGAAAAGGTGTCAAACACCAGTGGAAGGTGCAGCTAGGATGCTGTTCTTGGGCTTGAGATTCAGTGATCCAGCAGGGAAACAGTGTCCTCAATTAGCCAGTGAAGTGCTGCCTCAGATTCAATCGATGCATAGTACGACTTACTCTCAGATGGTTTGGGTTCATCGCTCCTTCTTTTGA
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| Protein seq | MAAMQQRGRLQPAGLYRGVGHQNPAPQPARSRTTTTIHGGGYQKSTGVRSHQKQAVVQPTVRPSSWLPGGTYRKPVTFKTQKPPKPAIAKPVVRPRPSIQQGGYQKNVIGPQSRTKPAPHLQFRKPEGPISIPENRTRKHLIQNAFANQKNHEHHEQNKVKPASSSGKVKFTEFKTSDIDAALEIFRSIQHKNLANLVGACSPRRALVYELLPDTLEDRLTDIKKSFTFRGKKSFTWRDRVTTAASICSALDYLHRNNHKPIIHGDLKPRNVHFTADNICKLRNFGISTLLHPTKHVPSAIEEVIQGMPGEKVIQGIFRTFMDIDDCKIQIQTDVSALGIILLQLVTGHSDAKSLRDFVAQKLGDDSEFQRKSILQKREILKGIVDPELKRCQTPVEGAARMLFLGLRFSDPAGKQCPQLASEVLPQIQSMHSTTYSQMVWVHRSFF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0618300 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g40380 | RBH | 0.000000 | 0.0 | 0.037124 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0618300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0020360 | SBH | 0.177908 | 2.812620 | 2.621748 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020530 | SBH | 0.0 | 0.996001 | 0.638272 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0020320 | SBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0019870 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0020380 | SBH | 0.0 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0362000 | SBH | 0.1143245 | 0.6414345 | 0.560674 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020860 | SBH | 0.0 | 0.367912 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0380400 | SBH | 0.0302185 | 2.87423 | 0.1164835 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020670 | SBH | 0.0 | 0.170812 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020820 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020480 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020120 | SBH | 0.0 | 0.0 | 0.103376 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020230 | SBH | 0.0 | 1.023329 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020230 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0020600 | RBH | 0.0 | 0.0 | 0.0 |
