Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0020230 | OGI:11069200 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:26054142-26055710 | ||||||||
| Gene Symbol | RLCK340, OsRLCK340, RLCK341, OsRLCK341 | ||||||||||
| DNA seq | tcaaccctgacgatgagaggcactactcttcatttcctcgatgagtggccacacatcagctgcaaggtctggacgatgtttctcatttggatcactgcatttcaatcccaggaacagcatctctgcggcgtcatctaactggcatttcttcaggtcaggatccacaatgctttttaggacctcatgttgctgctccatgctcttcccttggaatcgtataatatctcctagtttgctgagcacattctttctcaaatcctttggtttttgtgctgtaacaagttgcaaaagtataatgcccagagcggacacatctagctgaatcttgtgggtgtcagaaccaatcaacattcttgcaaatcccttaagaccaccccaaaacgagacaggtttggaagtgtattgcagcagatgggacatggcaaagttgctaagcttgcatacattgtctttactgaagaggatgttgctcgttttgagattaccatggacgattgggttgggctcggtgttgtggaggaagatgagagcggagcatatgctggaggcagctctcactcgtcttttccatgtgaacctcctcctttgtccactttcagtgaggtgatctttcagggagccattaggcaagaactcgtagatgagtatctgtctctctggacatgctcctatgagggtgacaagattttgatgccggatctttttgaggatggcaacctgcattttcagagctcttctatcttggaaaatgagaagaatattgtacggtagctctaacttgcgggaaaattaatatatgaacgattcacgtaggcataaactttcttgcatttatacccatggaatttctgaactgtatttcaattagtaggcatgcaatcagggagaaagtaaggcaggaaaaataggtgaggttgcagctaacatttgaatcagagtaaaatactgtagccggaaactgtagagaaattacttttgtggtcattttcagcagttgggtagcaaaatgaatggctaagattgtctgcaattgctattgcgcagtcaaaaactcacaatagcaactgcaccgatctgaattcaatggattgagggatcaaagagacaactgtaatcccccatgttaaacttttgtcagcaattactatgaaatgaaccttttcttttgcatggagctactataaatgaacttagattagtagaaatattaaaagatatattgcagaatatatctttatacttgcctcttgattaaactctcgcatgcttggcagaggttggcggctgtctctgttattgggaatctttacagcaacagtcttctcaccaattttgcactgaagaacagacccataactaccagttccaagaaaaattgcatctcggtcactgactacacgatgaatcagtgaaggcctgtactcggtgaacctaatcatctcatatgacctggaagcttgctcctccatccaccagcgatgtttggtataaattgatactatggtttccgttctcctgagttcttccctgagtttctggttctccctgatggcattgttcgccctgaat
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| CDS seq | atggaggagcaagcttccaggtcatatgagatgattaggttcaccgagtacaggccttcactgattcatcgtgtagtcagtgaccgagatgcaatttttcttggaactggtagttatgggtctgttcttcagtgcaaaattggtgagaagactgttgctgtaaagattcccaataacagagacagccgccaacctctgccaagcatgcgagagtttaatcaagaggcaaatagaagagctctgaaaatgcaggttgccatcctcaaaaagatccggcatcaaaatcttgtcaccctcataggagcatgtccagagagacagatactcatctacgagttcttgcctaatggctccctgaaagatcacctcactgaaagtggacaaaggaggaggttcacatggaaaagacgagtgagagctgcctccagcatatgctccgctctcatcttcctccacaacaccgagcccaacccaatcgtccatggtaatctcaaaacgagcaacatcctcttcagtaaagacaatgtatgcaagcttagcaactttgccatgtcccatctgctgcaatacacttccaaacctgtctcgttttggggtggtcttaagggatttgcaagaatgttgattggttctgacacccacaagattcagctagatgtgtccgctctgggcattatacttttgcaacttgttacagcacaaaaaccaaaggatttgagaaagaatgtgctcagcaaactaggagatattatacgattccaagggaagagcatggagcagcaacatgaggtcctaaaaagcattgtggatcctgacctgaagaaatgccagttagatgacgccgcagagatgctgttcctgggattgaaatgcagtgatccaaatgagaaacatcgtccagaccttgcagctgatgtgtggccactcatcgaggaaatgaagagtagtgcctctcatcgtcagggttga
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| Protein seq | MEEQASRSYEMIRFTEYRPSLIHRVVSDRDAIFLGTGSYGSVLQCKIGEKTVAVKIPNNRDSRQPLPSMREFNQEANRRALKMQVAILKKIRHQNLVTLIGACPERQILIYEFLPNGSLKDHLTESGQRRRFTWKRRVRAASSICSALIFLHNTEPNPIVHGNLKTSNILFSKDNVCKLSNFAMSHLLQYTSKPVSFWGGLKGFARMLIGSDTHKIQLDVSALGIILLQLVTAQKPKDLRKNVLSKLGDIIRFQGKSMEQQHEVLKSIVDPDLKKCQLDDAAEMLFLGLKCSDPNEKHRPDLAADVWPLIEEMKSSASHRQG |
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| Function | U-box domain-containing protein 70 [UniProtKB/Swiss-Prot:Q5WA76] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0020230 | OsLaMu_11g0020230.01 | Chr11 | 26054142 | 26055710 | - | NAM | ||
| CDS seq | atggaggagcaagcttccaggtcatatgagatgattaggttcaccgagtacaggccttcactgattcatcgtgtagtcagtgaccgagatgcaatttttcttggaactggtagttatgggtctgttcttcagtgcaaaattggtgagaagactgttgctgtaaagattcccaataacagagacagccgccaacctctgccaagcatgcgagagtttaatcaagaggcaaatagaagagctctgaaaatgcaggttgccatcctcaaaaagatccggcatcaaaatcttgtcaccctcataggagcatgtccagagagacagatactcatctacgagttcttgcctaatggctccctgaaagatcacctcactgaaagtggacaaaggaggaggttcacatggaaaagacgagtgagagctgcctccagcatatgctccgctctcatcttcctccacaacaccgagcccaacccaatcgtccatggtaatctcaaaacgagcaacatcctcttcagtaaagacaatgtatgcaagcttagcaactttgccatgtcccatctgctgcaatacacttccaaacctgtctcgttttggggtggtcttaagggatttgcaagaatgttgattggttctgacacccacaagattcagctagatgtgtccgctctgggcattatacttttgcaacttgttacagcacaaaaaccaaaggatttgagaaagaatgtgctcagcaaactaggagatattatacgattccaagggaagagcatggagcagcaacatgaggtcctaaaaagcattgtggatcctgacctgaagaaatgccagttagatgacgccgcagagatgctgttcctgggattgaaatgcagtgatccaaatgagaaacatcgtccagaccttgcagctgatgtgtggccactcatcgaggaaatgaagagtagtgcctctcatcgtcagggttga
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| Protein seq | MEEQASRSYEMIRFTEYRPSLIHRVVSDRDAIFLGTGSYGSVLQCKIGEKTVAVKIPNNRDSRQPLPSMREFNQEANRRALKMQVAILKKIRHQNLVTLIGACPERQILIYEFLPNGSLKDHLTESGQRRRFTWKRRVRAASSICSALIFLHNTEPNPIVHGNLKTSNILFSKDNVCKLSNFAMSHLLQYTSKPVSFWGGLKGFARMLIGSDTHKIQLDVSALGIILLQLVTAQKPKDLRKNVLSKLGDIIRFQGKSMEQQHEVLKSIVDPDLKKCQLDDAAEMLFLGLKCSDPNEKHRPDLAADVWPLIEEMKSSASHRQG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.023329 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0618300 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g40430 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0618300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0020360 | RBH | 0.177908 | 2.812620 | 2.621748 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020530 | RBH | 0.0 | 0.996001 | 0.638272 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0020320 | RBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0019870 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0020380 | RBH | 0.0 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0362300 | SBH | 0.3697965 | 1.4849135 | 1.3814215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020860 | RBH | 0.0 | 0.367912 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0380100 | RBH | 0.308046 | 5.2114445 | 2.6264525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020670 | RBH | 0.0 | 0.170812 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020820 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020390 | RBH | 0.000000 | 15.505994 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020120 | RBH | 0.0 | 0.0 | 0.103376 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020270 | SBH | 0.159030 | 3.195127 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020280 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0020640 | SBH | 0.0 | 0.0 | 0.605629 |
