Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_11g0014130 | OGI:11052210 | 13/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr11:19192810-19195713 | ||||||||
| Gene Symbol | RYMV3, OsRYMV3 | ||||||||||
| DNA seq | tcacgagttaattgaaatggtgacttggttgggatggtcacggattgcgcgcatgagcgcagcctccacctgctccacctcctggaccttggctttggtccacaaaaggctaatgtcagcttccttaagggacagcaggttccccaaacccagcccagtctcatagctgccatcgtctatcatcttgcgcacgctggcattgaaccggattctctcaacacttggcatagcttctcgtccaaaaaccactaccccatcctccgttatgttccagaaatggaaccttctcaagcagcggaacccagggccgatgagcatcctttcacttggggcacatatcgtgagataggctaggaccggcagcatactaaggatttgcatgtcgtctgcctgcagcagccgccgattgaagttgatgctcagcacagagagctccgtcaggagcaaagggtccctctttatccacaccggcatcctcgaaaaatagccaagcccgtgtagctcgaacctgcgcagatttggaggggcgacgaccacccagcattcccccaaaacatccagtgattcttgatggttgcttaaaatggtgagcgtttggattttgttcagtttgctcagggactccaccagcgtttcctgaatgtacttggtcctgttgtctgctgatccaacccaccgaatttttagctcccttaacccggtcatattgcgcagcactctcacgaagcttgggtgctgctggctgatatcgatccttgacaatgcttctacgaatttcagatgcgccatcccttttggcaacctagtactgaagtccacgtataggcccctcaactgttccagctgagtaacgtccgatggtagttctgttatctcagcattttccaaatctaatacttgtaaaaaccggagctttcctagtccaattgggagctcaccaatctgtgtgcatcttagccctagatatctcaggtgaaataatttcgaaacatgactaaggttacgaccactactccgaaagacacaatcttccagatccaatacacgtaaaacatgaaagcgtgatagggaaggaatcaatttgattgcagtcctaaagccagtgaaggacctcacatgagacagatcaatggtagcaagaggtgacgtgtgctctactctacaatcttggactagaagtgataatctacgaaccttgctctgcaaacatgtgctctgcccaacatcatccggtgtagaaacaaagttttcttctgttgacgccgaagatataagatcaagcactatatcatgtaaacgacatgtttgcttgatgccactgtaggagtataacaactggaccatgcttctgtttacaagctcattcaagcaacactctccaagctcaaataagctattctcttcttctttacactggacaaaaccctgagctatccatgtccatatcaagcgatcccttctaatattatgatcttctggaaatacactcatgtacaataaacaagcctttagatgagaaggaagatcgtgatagctaagtgataatatcttgcgcatatcgtccacagtaccaccttctgtcattccacgcccaatggatttcagcacagtactccactgctcctccgattgaaccttcttattagccaaaagactagctatactggttatggctaatggtacccctgcacatttctttaagatatcttttgatagccttaataaatattgaggacattccttcccgtcagtaaatattcttttatagaagagtgtttcagagtcctcactagaaagaggtttcatcttgtaaatgccgtgatgagtagcacaacacttatcagagacactcacaatgcgggttgtcgtgactattcgattgccaagattgttttccgggagtgcacatttgacgaattcccatatcttttcattccatatatcatcaattacgatgaagtacctgtacgtatcaatttggttagagcgcgcattagttgccaaatcagtgaatctgtagctcaaaaagaagaaaagaatagcagcgtacctcttgtgcttgataaaagatctgacttggtcaatgagctgtgtttcatcccttgttgtattatgaatattgccatacttttccttgtcaagtccatagagcatgtctttgaaaactttgttcatgtcagggtttcgaccaatggaaacaaatgcgccgcagtcaaaatgagatctgaggatcctgtcatacactgctctggcaagggtcgtcttgcccaacccacccattcctacaacggagaccgtcttcagtgaattctccgacccgtcggacgctaatatcatttcgatcagctcgttgcttgtagcatcgatcccaatgagttctctatcatctttgtagagagccgtcaggcgagggttgatggtggagacacctgcagcgttagcgccgtgcagctcaagagacccatacctttgacgcagctcagcccactgcttggcgaggtcctgggcttccccgacggctccgacaatctgacggagatccttgcccttcctgaacagcctgctcgtcttcttgacgaacttctttactttgttcttcaggttggccgccgggtgtccaatatggtcctcctccatgcctatgcgtaccatataggtgtcgactgcatcctccatgtcgtaggacagctcccggacctggcgtgcccacaccctgacgacagggtcgagttgctccgggggcacctcggccaccttgtgcatggcagcgtgcatcatcgtcagctctctctgaagagactcgatgcctttcctggttctcttgtctaggccgagctcagccaacagcaggtcgccgagcttgcggatgagggggctgatcatcgcccctgccgctacctgcat
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| CDS seq | atgcaggtagcggcaggggcgatgatcagccccctcatccgcaagctcggcgacctgctgttggctgagctcggcctagacaagagaaccaggaaaggcatcgagtctcttcagagagagctgacgatgatgcacgctgccatgcacaaggtggccgaggtgcccccggagcaactcgaccctgtcgtcagggtgtgggcacgccaggtccgggagctgtcctacgacatggaggatgcagtcgacacctatatggtacgcataggcatggaggaggaccatattggacacccggcggccaacctgaagaacaaagtaaagaagttcgtcaagaagacgagcaggctgttcaggaagggcaaggatctccgtcagattgtcggagccgtcggggaagcccaggacctcgccaagcagtgggctgagctgcgtcaaaggtatgggtctcttgagctgcacggcgctaacgctgcaggtgtctccaccatcaaccctcgcctgacggctctctacaaagatgatagagaactcattgggatcgatgctacaagcaacgagctgatcgaaatgatattagcgtccgacgggtcggagaattcactgaagacggtctccgttgtaggaatgggtgggttgggcaagacgacccttgccagagcagtgtatgacaggatcctcagatctcattttgactgcggcgcatttgtttccattggtcgaaaccctgacatgaacaaagttttcaaagacatgctctatggacttgacaaggaaaagtatggcaatattcataatacaacaagggatgaaacacagctcattgaccaagtcagatcttttatcaagcacaagaggtacgctgctattcttttcttctttttgagctacagattcactgatttggcaactaatgcgcgctctaaccaaattgatacgtacaggtacttcatcgtaattgatgatatatggaatgaaaagatatgggaattcgtcaaatgtgcactcccggaaaacaatcttggcaatcgaatagtcacgacaacccgcattgtgagtgtctctgataagtgttgtgctactcatcacggcatttacaagatgaaacctctttctagtgaggactctgaaacactcttctataaaagaatatttactgacgggaaggaatgtcctcaatatttattaaggctatcaaaagatatcttaaagaaatgtgcaggggtaccattagccataaccagtatagctagtcttttggctaataagaaggttcaatcggaggagcagtggagtactgtgctgaaatccattgggcgtggaatgacagaaggtggtactgtggacgatatgcgcaagatattatcacttagctatcacgatcttccttctcatctaaaggcttgtttattgtacatgagtgtatttccagaagatcataatattagaagggatcgcttgatatggacatggatagctcagggttttgtccagtgtaaagaagaagagaatagcttatttgagcttggagagtgttgcttgaatgagcttgtaaacagaagcatggtccagttgttatactcctacagtggcatcaagcaaacatgtcgtttacatgatatagtgcttgatcttatatcttcggcgtcaacagaagaaaactttgtttctacaccggatgatgttgggcagagcacatgtttgcagagcaaggttcgtagattatcacttctagtccaagattgtagagtagagcacacgtcacctcttgctaccattgatctgtctcatgtgaggtccttcactggctttaggactgcaatcaaattgattccttccctatcacgctttcatgttttacgtgtattggatctggaagattgtgtctttcggagtagtggtcgtaaccttagtcatgtttcgaaattatttcacctgagatatctagggctaagatgcacacagattggtgagctcccaattggactaggaaagctccggtttttacaagtattagatttggaaaatgctgagataacagaactaccatcggacgttactcagctggaacagttgaggggcctatacgtggacttcagtactaggttgccaaaagggatggcgcatctgaaattcgtagaagcattgtcaaggatcgatatcagccagcagcacccaagcttcgtgagagtgctgcgcaatatgaccgggttaagggagctaaaaattcggtgggttggatcagcagacaacaggaccaagtacattcaggaaacgctggtggagtccctgagcaaactgaacaaaatccaaacgctcaccattttaagcaaccatcaagaatcactggatgttttgggggaatgctgggtggtcgtcgcccctccaaatctgcgcaggttcgagctacacgggcttggctatttttcgaggatgccggtgtggataaagagggaccctttgctcctgacggagctctctgtgctgagcatcaacttcaatcggcggctgctgcaggcagacgacatgcaaatccttagtatgctgccggtcctagcctatctcacgatatgtgccccaagtgaaaggatgctcatcggccctgggttccgctgcttgagaaggttccatttctggaacataacggaggatggggtagtggtttttggacgagaagctatgccaagtgttgagagaatccggttcaatgccagcgtgcgcaagatgatagacgatggcagctatgagactgggctgggtttggggaacctgctgtcccttaaggaagctgacattagccttttgtggaccaaagccaaggtccaggaggtggagcaggtggaggctgcgctcatgcgcgcaatccgtgaccatcccaaccaagtcaccatttcaattaactcgtga
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| Protein seq | MQVAAGAMISPLIRKLGDLLLAELGLDKRTRKGIESLQRELTMMHAAMHKVAEVPPEQLDPVVRVWARQVRELSYDMEDAVDTYMVRIGMEEDHIGHPAANLKNKVKKFVKKTSRLFRKGKDLRQIVGAVGEAQDLAKQWAELRQRYGSLELHGANAAGVSTINPRLTALYKDDRELIGIDATSNELIEMILASDGSENSLKTVSVVGMGGLGKTTLARAVYDRILRSHFDCGAFVSIGRNPDMNKVFKDMLYGLDKEKYGNIHNTTRDETQLIDQVRSFIKHKRYAAILFFFLSYRFTDLATNARSNQIDTYRYFIVIDDIWNEKIWEFVKCALPENNLGNRIVTTTRIVSVSDKCCATHHGIYKMKPLSSEDSETLFYKRIFTDGKECPQYLLRLSKDILKKCAGVPLAITSIASLLANKKVQSEEQWSTVLKSIGRGMTEGGTVDDMRKILSLSYHDLPSHLKACLLYMSVFPEDHNIRRDRLIWTWIAQGFVQCKEEENSLFELGECCLNELVNRSMVQLLYSYSGIKQTCRLHDIVLDLISSASTEENFVSTPDDVGQSTCLQSKVRRLSLLVQDCRVEHTSPLATIDLSHVRSFTGFRTAIKLIPSLSRFHVLRVLDLEDCVFRSSGRNLSHVSKLFHLRYLGLRCTQIGELPIGLGKLRFLQVLDLENAEITELPSDVTQLEQLRGLYVDFSTRLPKGMAHLKFVEALSRIDISQQHPSFVRVLRNMTGLRELKIRWVGSADNRTKYIQETLVESLSKLNKIQTLTILSNHQESLDVLGECWVVVAPPNLRRFELHGLGYFSRMPVWIKRDPLLLTELSVLSINFNRRLLQADDMQILSMLPVLAYLTICAPSERMLIGPGFRCLRRFHFWNITEDGVVVFGREAMPSVERIRFNASVRKMIDDGSYETGLGLGNLLSLKEADISLLWTKAKVQEVEQVEAALMRAIRDHPNQVTISINS |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_11g0014130 | OsGoSa_11g0014130.01 | Chr11 | 19192810 | 19195713 | - | NAM | ||
| CDS seq | atgcaggtagcggcaggggcgatgatcagccccctcatccgcaagctcggcgacctgctgttggctgagctcggcctagacaagagaaccaggaaaggcatcgagtctcttcagagagagctgacgatgatgcacgctgccatgcacaaggtggccgaggtgcccccggagcaactcgaccctgtcgtcagggtgtgggcacgccaggtccgggagctgtcctacgacatggaggatgcagtcgacacctatatggtacgcataggcatggaggaggaccatattggacacccggcggccaacctgaagaacaaagtaaagaagttcgtcaagaagacgagcaggctgttcaggaagggcaaggatctccgtcagattgtcggagccgtcggggaagcccaggacctcgccaagcagtgggctgagctgcgtcaaaggtatgggtctcttgagctgcacggcgctaacgctgcaggtgtctccaccatcaaccctcgcctgacggctctctacaaagatgatagagaactcattgggatcgatgctacaagcaacgagctgatcgaaatgatattagcgtccgacgggtcggagaattcactgaagacggtctccgttgtaggaatgggtgggttgggcaagacgacccttgccagagcagtgtatgacaggatcctcagatctcattttgactgcggcgcatttgtttccattggtcgaaaccctgacatgaacaaagttttcaaagacatgctctatggacttgacaaggaaaagtatggcaatattcataatacaacaagggatgaaacacagctcattgaccaagtcagatcttttatcaagcacaagaggtacgctgctattcttttcttctttttgagctacagattcactgatttggcaactaatgcgcgctctaaccaaattgatacgtacaggtacttcatcgtaattgatgatatatggaatgaaaagatatgggaattcgtcaaatgtgcactcccggaaaacaatcttggcaatcgaatagtcacgacaacccgcattgtgagtgtctctgataagtgttgtgctactcatcacggcatttacaagatgaaacctctttctagtgaggactctgaaacactcttctataaaagaatatttactgacgggaaggaatgtcctcaatatttattaaggctatcaaaagatatcttaaagaaatgtgcaggggtaccattagccataaccagtatagctagtcttttggctaataagaaggttcaatcggaggagcagtggagtactgtgctgaaatccattgggcgtggaatgacagaaggtggtactgtggacgatatgcgcaagatattatcacttagctatcacgatcttccttctcatctaaaggcttgtttattgtacatgagtgtatttccagaagatcataatattagaagggatcgcttgatatggacatggatagctcagggttttgtccagtgtaaagaagaagagaatagcttatttgagcttggagagtgttgcttgaatgagcttgtaaacagaagcatggtccagttgttatactcctacagtggcatcaagcaaacatgtcgtttacatgatatagtgcttgatcttatatcttcggcgtcaacagaagaaaactttgtttctacaccggatgatgttgggcagagcacatgtttgcagagcaaggttcgtagattatcacttctagtccaagattgtagagtagagcacacgtcacctcttgctaccattgatctgtctcatgtgaggtccttcactggctttaggactgcaatcaaattgattccttccctatcacgctttcatgttttacgtgtattggatctggaagattgtgtctttcggagtagtggtcgtaaccttagtcatgtttcgaaattatttcacctgagatatctagggctaagatgcacacagattggtgagctcccaattggactaggaaagctccggtttttacaagtattagatttggaaaatgctgagataacagaactaccatcggacgttactcagctggaacagttgaggggcctatacgtggacttcagtactaggttgccaaaagggatggcgcatctgaaattcgtagaagcattgtcaaggatcgatatcagccagcagcacccaagcttcgtgagagtgctgcgcaatatgaccgggttaagggagctaaaaattcggtgggttggatcagcagacaacaggaccaagtacattcaggaaacgctggtggagtccctgagcaaactgaacaaaatccaaacgctcaccattttaagcaaccatcaagaatcactggatgttttgggggaatgctgggtggtcgtcgcccctccaaatctgcgcaggttcgagctacacgggcttggctatttttcgaggatgccggtgtggataaagagggaccctttgctcctgacggagctctctgtgctgagcatcaacttcaatcggcggctgctgcaggcagacgacatgcaaatccttagtatgctgccggtcctagcctatctcacgatatgtgccccaagtgaaaggatgctcatcggccctgggttccgctgcttgagaaggttccatttctggaacataacggaggatggggtagtggtttttggacgagaagctatgccaagtgttgagagaatccggttcaatgccagcgtgcgcaagatgatagacgatggcagctatgagactgggctgggtttggggaacctgctgtcccttaaggaagctgacattagccttttgtggaccaaagccaaggtccaggaggtggagcaggtggaggctgcgctcatgcgcgcaatccgtgaccatcccaaccaagtcaccatttcaattaactcgtga
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| Protein seq | MQVAAGAMISPLIRKLGDLLLAELGLDKRTRKGIESLQRELTMMHAAMHKVAEVPPEQLDPVVRVWARQVRELSYDMEDAVDTYMVRIGMEEDHIGHPAANLKNKVKKFVKKTSRLFRKGKDLRQIVGAVGEAQDLAKQWAELRQRYGSLELHGANAAGVSTINPRLTALYKDDRELIGIDATSNELIEMILASDGSENSLKTVSVVGMGGLGKTTLARAVYDRILRSHFDCGAFVSIGRNPDMNKVFKDMLYGLDKEKYGNIHNTTRDETQLIDQVRSFIKHKRYAAILFFFLSYRFTDLATNARSNQIDTYRYFIVIDDIWNEKIWEFVKCALPENNLGNRIVTTTRIVSVSDKCCATHHGIYKMKPLSSEDSETLFYKRIFTDGKECPQYLLRLSKDILKKCAGVPLAITSIASLLANKKVQSEEQWSTVLKSIGRGMTEGGTVDDMRKILSLSYHDLPSHLKACLLYMSVFPEDHNIRRDRLIWTWIAQGFVQCKEEENSLFELGECCLNELVNRSMVQLLYSYSGIKQTCRLHDIVLDLISSASTEENFVSTPDDVGQSTCLQSKVRRLSLLVQDCRVEHTSPLATIDLSHVRSFTGFRTAIKLIPSLSRFHVLRVLDLEDCVFRSSGRNLSHVSKLFHLRYLGLRCTQIGELPIGLGKLRFLQVLDLENAEITELPSDVTQLEQLRGLYVDFSTRLPKGMAHLKFVEALSRIDISQQHPSFVRVLRNMTGLRELKIRWVGSADNRTKYIQETLVESLSKLNKIQTLTILSNHQESLDVLGECWVVVAPPNLRRFELHGLGYFSRMPVWIKRDPLLLTELSVLSINFNRRLLQADDMQILSMLPVLAYLTICAPSERMLIGPGFRCLRRFHFWNITEDGVVVFGREAMPSVERIRFNASVRKMIDDGSYETGLGLGNLLSLKEADISLLWTKAKVQEVEQVEAALMRAIRDHPNQVTISINS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0588600 | SBH | 7.568878 | 7.147371 | 7.533903 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g43700 | SBH | 0.338432 | 0.094341 | 0.064541 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0588600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0022600 | SBH | 0.142832 | 0.0 | 0.795712 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0022650 | SBH | 0.107532 | 1.313498 | 0.726294 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022380 | SBH | 0.469252 | 1.244121 | 1.933624 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021910 | SBH | 0.000000 | 0.117333 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017710 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0349000 | RBH | 0.0049655 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0014590 | RBH | 0.140112 | 0.0 | 0.254217 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0281300 | RBH | 3.501624 | 0.5873895 | 0.0405155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0014500 | RBH | 0.040902 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014490 | RBH | 0.062602 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0014350 | RBH | 4.941029 | 10.167318 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0070630 | RBH | 0.0 | 0.0 | 0.118910 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0018910 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017650 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017950 | RBH | 0.0 | 0.0 | 0.000000 |
