Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_04g0001580 | OGI:04007210 | 1/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr04:2193606-2195570 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agtccaatcaatcatgataatcgattatatattaaatatagtattttgcattacatagacaatcatcagcataattcatggcattaaacctttgttcagaacattaatgcagaaaatagaatctaaagtatatacaaaaaaacacatcttgttgcccccattctccaccttgcagccatcatcattccgtgacatgtacaggtgacctagttgcgtactggcagtcacgaaatttcccccacatcttcacccattTAtcttgtcaacctataatagAaaaaatatataagcattaatataccattatgaagacgaaaagcacatctccgaagtaagaagtaagagataggaacatacgaaaattgcaggccacgcaatttcaagtcctacaacatgaccaacaattttgtagcctttgtatggcctaatcaaatcttcggattttgccaatgcaaaatcgacatgaaccattaaaaattcatttcctagctcaacacctccaactctgcgtgttggatcagaacttacaatagtggcaagagccacgtttgtattccgatttttccaactttttaagaatactttagttccaacctgaagtgcataaatacatccatcaatattatcaatgtactttaagaaattcaagtatcataaataagttcacagtaaaatacctccattgaattgtcagtgataaagtccattttgctgcactgttgtttctataaaaaaaaaatttggatcatggtttgcaatttaaccacaagatagaaagaaagaaagaccaaacagagccaattattgttctccaattcaatcataatactagtgaatcatgcatgttatagtttgaatggactgatatttgtaaacatggtgaataaaaaaataaccttgtatgcaccaccaactttatgtgcatgtaccatatggctgtcctgattgtcaggtttcttgttctataggggagggcaacaaatcagtgctaaaatTAtatatattaagaaattttactttcaaacTtttctatcaaataacttttgaactcaataagatgtgaaaactaaccttggcacaaataatctccatctgtttcccatggtcatttaggccaaaggttcgtttgttctagaatcaaagaatacatcacattatcatgaactatagtaaacattcatagttagttacaaacattaccaaataatataatgctatgtatccatgataaccatataataggatgcaaccatggtgagttcagaataaaaatataaattgaaagacaaggaccttgtgtgcagtagcatgcttggttggtggtgtcttatcctcatcttgaacatggctttgtgaattctgttgtcaaagagaacatatattcccagttacaaaatagtgcaactattcccatgtataaaacaatgaaatttatgcccatggtcatttaggccaaaggttcgtttgttctagaatcaaagaatacatcacattatcatgaactatagtaaacattcatagttagttacaaacattaccaaataatataatgctatgtatccatgataaccatataataggatgcaaccatggtgagttcagaataaaaatataattgaaagacaaggaccttgtgtgcagtagcatgcttggttggtggtgtcttatcctcatcttgaacatggctttgtgaattctgttgtcaaagagaacatatattcccagttacAaaatagtgcaactattcccatgtataaaacaatgaaatttatgtatattaccatcacaatgttttcctgctcaacatgacaaatttcttgcaagggaccgtcaccatacactttctatcacagtggaaaataaaaggacattaagaccagattttattaaactatttagactaaaatattagcaaggtttaccactgttgaattgtcagttaaaaagtccattgtgttgcattgc
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| CDS seq | gataatattgatggatgtatttatgcacttcaggttggaactaaagtattcttaaaaagttggaaaaatcggaatacaaacgtggctcttgccactattgtaagttctgatccaacacgcagagttggaggtgttgagctaggaaatgaatttttaatggttcatgtcgattttgcattggcaaaatccgaagatttgattaggccatacaaaggctacaaaattgttggtcatgttgtaggacttgaaattgcgtggcctgcaattttcgttgacaagaTAaatgggtga |
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| Protein seq | DNIDGCIYALQVGTKVFLKSWKNRNTNVALATIVSSDPTRRVGGVELGNEFLMVHVDFALAKSEDLIRPYKGYKIVGHVVGLEIAWPAIFVDKING |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_04g0001580 | OsGoSa_04g0001580.01 | Chr04 | 2193748 | 2194232 | - | NAM | ||
| CDS seq | gataatattgatggatgtatttatgcacttcaggttggaactaaagtattcttaaaaagttggaaaaatcggaatacaaacgtggctcttgccactattgtaagttctgatccaacacgcagagttggaggtgttgagctaggaaatgaatttttaatggttcatgtcgattttgcattggcaaaatccgaagatttgattaggccatacaaaggctacaaaattgttggtcatgttgtaggacttgaaattgcgtggcctgcaattttcgttgacaagaTAaatgggtga
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| Protein seq | DNIDGCIYALQVGTKVFLKSWKNRNTNVALATIVSSDPTRRVGGVELGNEFLMVHVDFALAKSEDLIRPYKGYKIVGHVVGLEIAWPAIFVDKING |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_04g0001580 | OsGoSa_04g0001580.02 | Chr04 | 2193606 | 2195570 | - | IsoSeq | ||
| CDS seq | atgaccatgggaaacagatggagattatttgtgccaagaacaagaaacctgacaatcaggacagccatatggtacatgcacataaagttggtggtgcatacaagaaacaacagtgcagcaaaatggactttatcactgacaattcaatggaggttggaactaaagtat |
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| Protein seq | MTMGNRWRLFVPRTRNLTIRTAIWYMHIKLVVHTRNNSAAKWTLSLTIQWRLELKY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 18.149158 | 62.964188 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g28010 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0008770 | SBH | 5.201477 | 7.930246 | 20.901375 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0008450 | SBH | 0.0 | 0.000000 | 0.817021 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0140200 | SBH | 8.170796 | 65.6157875 | 68.633514 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008150 | SBH | 1.303406 | 0.170754 | 1.803121 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0260900 | SBH | 0.1633855 | 4.9222585 | 0.003344 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0007750 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0012230 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0004930 | RBH | 11.888258 | 31.335684 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0008210 | SBH | 0.000000 | 0.114828 | 0.147641 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0008570 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G022630 | SBH | 0.512635 | 4.929079 | 6.489412 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0007990 | SBH | 0.228594 | 0.0 | 1.027620 |
