Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_02g0019780 | OGI:02056010 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr02:20426214-20430979 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gatcaaatcaagtccattggattcaagaatgtacatgcaagtatactacgaagcgggAaaaaaaactaccatggctcgaactagaactgaaatcagaagcctgtaaaaacaatgttaataacaattaaacaagactggcccctacgtgatcctaaacacatcataatcccttctcgaccaaccatccatctggcgtataacagctggtacacgtgtcagactacagcactgcttcgctgcctctctatgcaacagtagtcatcgatggcccgcggcagcggcaggaggaggaggatgaggatgttcttctgcctgtccgccggcggcggcggacggcgcgggctgctcatcggagacgacgatctccagccggtcgtctgcggctgccgccggttggagcgcgtcggcgtccgacgacgaggacgcggtggcggagagctgctgctgctgctgccggaaggttgcacgcgcgggggccggggtggagggcctggcggcggcgggggggcagtagaggGGCggcggcagcatggcggcgggggaggggggtgggtgcttggcgttggcggcggcggcgcggagggaggcgcggcagacggggcaggtggagtgctgcctgagccaggcgtcgatgcaggcgacgtggaaggcgtggccgcaggaggggagcacgcgcaccacgtccttcgcctcgtactcctccaggcacaccgggcacctgcgcgcgcgcgccaagattacgtcagttttacccctgccccccccccccccccccccccccccgacagcaaattaagccgacatcagaaaccgtattgtcttgctttttctataaaaaaaggatataaattgttttagaacaatctagagagttttgttatttgctcacggcattcttaattcaattcggcactttgtgcgacatggaatatatacccacccataaaaaatatttaatatatattgaagtgaaaaatatgtgcaatgagtagtacttaaaaaataatcatatttatcgagagaaagaggagttaagataaacggaaccaagcgtgggaagctaattaattcattgtattgatttctcattggcaatcaatataattcaccagtatatacaaatattcatttgattaagatataagtaacaatacgacactataaaatgcttctctagagcaccacataattaatgaactattatgacgatatatcaggttccttttaaggccctttttctgctgaatggaatataaacgatatatgcaaaaaaaaatttgaatggttgaataattcgtgatacttatttaagagtatacacgaatttattaactattataaaatttaaaatggatttaaaacaatattttaagaatttcatatgtagctcaagaagcatgacactaaatagaatgcgacgtccatggctccaccattagataatgaatgtagtgaagttggtatgaaactcaagtgtgaacgtaactatgccgttgattttttttactcgcccgcccaacatgcggtgcttgcagcttcgcaaggcttctactggaagctgctagcgtcttttgagtactgaagtacgaatcgaacggttcatacagtttgctgcctgcatctaacggtggacaatttgcagcttacgtcactaaattaggattcaagaaagatcaattctttcactactttagatttgccaagagacaacttcaaccattattttaagaactacattatgaaaaagtagtgtgcactctctactggtataaaacaatctgaatcattgatctcgtttgattagagggtttcagatatattactaccacctcaataaacaacaatagtagaaacatggagggtatTAttataaaaagaaagatgcaaaggggaataattgtcatttagccgtgattaaacttttttttctccctttttagcttttccgatagaatatgagcgaagccatcgcaatgaatgattatagaatgatttagccaagaaaaaataatacataaatactccctccgtttcacaatgtaagtcattatatcattttccacattcatattaatgttaatgaatctagacatatatatatctatctagattcattaacatcaatataaatgtagaaaatggtagaataacttaaattgtgaaacggaggaagtaatagttactcttaatcatggtattagtaaattattaatttgtctataataatactggtagtataatactacagtattttaatatatcctctaagagagtgaaaactttacggagtacaattttacaggttgtgtcatattgcaacaaaggtaacgtaagttcaaagtaaaatatgtctattgcaactaaggtaacatatgctcaaagtaagccaacaaaagtaaaattatccagtttaaaatagaaacattaattaaaatatggttcaaaatatcgatataaaagatggcccaaaatttacttttatagagaagtgatatgttcctaactttgaaagtcaaaacaacttttggtaggagtacaataaagggcaacatagtacactaaacaaccccctccctattaatataagccataattatagtattagtgaccactttcgatctgactttgtctctctggtacgtcaagcacaaatgcacaattgactatttctgaaattgataggccgtcatggcctttattggtaagataagggcagttcgaacccagagaaccactaaactatcttgcttctgttaactaatatccataacccatcatatagtttccagtttcgaggtgatcttccccattttgcacttctacttcagtctaatgccAaaaaaacaggtttctgtgacttcgatcttacagaacattatattttttttcaagtaaagccaagtccagatcatcttgattcttaagtaaagctagctaaatccgcaaaattcttataaataaaaagcaaatccgcgcaacaagaccgttgcactctaaactatatttaaattaagagaacatgtgatttataccagggcgaaagctatcagccaatgtacctattatctctttatcaatctattttactctctccgttcttaaataatatttaccattttagtctaaagatttatctcataaaactttcttttaagtggacccattagacatttttaatacaacttcaatatccttcttcttgtttagccattgaaccagcaatgctccctcctcgtcgtcctcattttctcttcgcattaatgaataacaaagtaacattttaatctcttacttaatctacctttgactcgctagaacaatcgtcccttaggatggagggagtatattgctaagaaaagatagtgaaccatcacatttgtttcgagatcttagaaattactaaattaatatatgaggaaaacataaatatttgtAaaattttatcgcattgaatctagattataacctgaaaaatcgatcaatcTAtataggttatatacatgtatttttattcattatctaaaaatagttatatacaatataattatattaattatatttatagaactacaaataagacccccacataaatacaatttttttaaggaattaataaaattatttttctaaacaatttttaatctagctttctgtaattgtcaacgaaattcagcaagttgtgatcgatcgtaaagAaaaagaaatgattcagaaaaaagaagagctctctactgctaaaaaatAaaaagaaagcggccagctgcagtaaaaggaaaagggccacacgaattttgtttcgccacgccatcgctagatacgctcgcgcacaaagcgaattcgtctcgcctgacgtgatgcatttctagctagctactgtactagctagttgttgttggtattatccgcgacgagaaattaaattttgtcgaataatcgtggcatgagcgcgtgagattaaagccaatttaaaacccaacaaaaagagggagggattaattggtggtgccttaactgcgattcctccagcgccgccgccgcgcgaggccgcgagccgccgtcgccgaacttggccgtcgggaagctcgtcaccaccgccggctccagcccgcggatcccgcgctccacctGCgcgcgcgcgcgcGCCATGCGAACCGATCACAAACACGCTCGTACGTACGTAGCACGAACGATCAACGAGAGGATGGGGTTGCTGCGTACGTACGCTGAAGGCCGGGAAGGCGTCGCCGTGCGCCGCCGCGGCTGCGGCGGCGGATTGGCCCGCCCTGAGGTGGATGCGGGCGCAGAGCAGCCTGACGAAGATGAAGAGCACGAAGAAGGCGCTGACGGAGAAGGCCATCACCGTCGTCACCGTGTTCATGCTCATGCCGCCGCCGCCGCTCGTCGACTTCTCCGCCGGCGAGGACATTCGCCCTCCAGCATCTCACTCCGGGCTCCACCACCACCACCACCCAATCCGCGAGCTCAGCTAGCTCTGGATTGGATGGTATCCTCCTCCTCCTCCTCTCCTCGCCGTCGGAGAATCAACCAATTAACCAATCAAGCAATCAATCAAATCAATCGACCAATCCACAACTCCCCGCCGTAATAAAGAGGAAGAGGATGAGAAGGGCGGAGCGCgcatagcgcatagcggcaacagcgagtgtgtactcgcctcgcctgcacccgcctcggcctagggaaattgttttgtttccgctactggtaataatctatggtcgtctgccgattagttgcacgctaat
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| CDS seq | ATGTCCTCGCCGGCGGAGAAGTCGACGAGCGGCGGCGGCGGCATGAGCATGAACACGGTGACGACGGTGATGGCCTTCTCCGTCAGCGCCTTCTTCGTGCTCTTCATCTTCGTCAGGCTGCTCTGCGCCCGCATCCACCTCAGGGCGGGCCAATCCGCCGCCGCAGCCGCGGCGGCGCACGGCGACGCCTTCCCGGCCTTCAGCgtggagcgcgggatccgcgggctggagccggcggtggtgacgagcttcccgacggccaagttcggcgacggcggctcgcggcctcgcgcggcggcggcgctggaggaatcgcagtgcccggtgtgcctggaggagtacgaggcgaaggacgtggtgcgcgtgctcccctcctgcggccacgccttccacgtcgcctgcatcgacgcctggctcaggcagcactccacctgccccgtctgccgcgcctccctccgcgccgccgccgccaacgccaagcacccacccccctcccccgccgccatgctgccgccGCCcctctactgcccccccgccgccgccaggccctccaccccggcccccgcgcgtgcaaccttccggcagcagcagcagcagctctccgccaccgcgtcctcgtcgtcggacgccgacgcgctccaaccggcggcagccgcagacgaccggctggagatcgtcgtctccgatgagcagcccgcgccgtccgccgccgccggcggacaggcagaagaacatcctcatcctcctcctcctgccgctgccgcgggccatcgatga
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| Protein seq | MSSPAEKSTSGGGGMSMNTVTTVMAFSVSAFFVLFIFVRLLCARIHLRAGQSAAAAAAAHGDAFPAFSVERGIRGLEPAVVTSFPTAKFGDGGSRPRAAAALEESQCPVCLEEYEAKDVVRVLPSCGHAFHVACIDAWLRQHSTCPVCRASLRAAAANAKHPPPSPAAMLPPPLYCPPAAARPSTPAPARATFRQQQQQLSATASSSSDADALQPAAAADDRLEIVVSDEQPAPSAAAGGQAEEHPHPPPPAAAAGHR |
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| Function | RING-H2 finger protein ATL32 [UniProtKB/Swiss-Prot:Q8W571] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0019780 | OsGoSa_02g0019780.01 | Chr02 | 20426238 | 20430979 | - | NAM | ||
| CDS seq | ATGTCCTCGCCGGCGGAGAAGTCGACGAGCGGCGGCGGCGGCATGAGCATGAACACGGTGACGACGGTGATGGCCTTCTCCGTCAGCGCCTTCTTCGTGCTCTTCATCTTCGTCAGGCTGCTCTGCGCCCGCATCCACCTCAGGGCGGGCCAATCCGCCGCCGCAGCCGCGGCGGCGCACGGCGACGCCTTCCCGGCCTTCAGCgtggagcgcgggatccgcgggctggagccggcggtggtgacgagcttcccgacggccaagttcggcgacggcggctcgcggcctcgcgcggcggcggcgctggaggaatcgcagtgcccggtgtgcctggaggagtacgaggcgaaggacgtggtgcgcgtgctcccctcctgcggccacgccttccacgtcgcctgcatcgacgcctggctcaggcagcactccacctgccccgtctgccgcgcctccctccgcgccgccgccgccaacgccaagcacccacccccctcccccgccgccatgctgccgccGCCcctctactgcccccccgccgccgccaggccctccaccccggcccccgcgcgtgcaaccttccggcagcagcagcagcagctctccgccaccgcgtcctcgtcgtcggacgccgacgcgctccaaccggcggcagccgcagacgaccggctggagatcgtcgtctccgatgagcagcccgcgccgtccgccgccgccggcggacaggcagaagaacatcctcatcctcctcctcctgccgctgccgcgggccatcgatga
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| Protein seq | MSSPAEKSTSGGGGMSMNTVTTVMAFSVSAFFVLFIFVRLLCARIHLRAGQSAAAAAAAHGDAFPAFSVERGIRGLEPAVVTSFPTAKFGDGGSRPRAAAALEESQCPVCLEEYEAKDVVRVLPSCGHAFHVACIDAWLRQHSTCPVCRASLRAAAANAKHPPPSPAAMLPPPLYCPPAAARPSTPAPARATFRQQQQQLSATASSSSDADALQPAAAADDRLEIVVSDEQPAPSAAAGGQAEEHPHPPPPAAAAGHR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0019780 | OsGoSa_02g0019780.02 | Chr02 | 20426214 | 20426399 | - | IsoSeq | ||
| CDS seq | atggttggtcgagaagggattatgatgtgtttaggatcacgtaggggccagtcttgtttaattgttattaacattgtttttacaggc |
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| Protein seq | MVGREGIMMCLGSRRGQSCLIVINIVFTG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.580898 | 50.420223 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0528000 | RBH | 0.647168 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g45390 | SBH | 0.080689 | 0.133543 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0528000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0019600 | RBH | 0.272954 | 0.0 | 0.416993 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0019710 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0019650 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0019430 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0019390 | RBH | 0.000000 | 5.119490 | 1.257327 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0320500 | RBH | 2.2611235 | 5.8503205 | 9.1613405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0019100 | RBH | 0.096408 | 0.000000 | 0.154879 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0340600 | RBH | 6.0413795 | 8.9839575 | 0.06729 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0019640 | RBH | 0.000000 | 0.204399 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0019370 | RBH | 0.277155 | 5.493808 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0012670 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0019500 | RBH | 0.000000 | 0.659367 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0019290 | RBH | 0.218514 | 3.805357 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G019720 | RBH | 0.000000 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0019440 | RBH | 0.0 | 2.212818 | 0.000000 |
