Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g45390 | OGI:02077860 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:27602320-27606781 | ||||||||
| Gene Symbol | OsRFPH2-2 | ||||||||||
| DNA seq | ATCATTCGTTGCCAGCGCCCCACGCAAATCCCAAATCCCAAACCCCGCGGCGATGGCCACCGTCGCCCAGCCCGACCCCAGCAGCAGCAGCCGCCGCACCGCCGCTCTTATACGCCGCAGCGGCAGCGTCCTGCTCGAGCAACCGTATTATTAGCCACGGCCCCGCACGCCCGCTTGATCCGCCTGCTGCGCGCGCGCGAGTTTTTTTTTTTTCCTTTTTTCCTGTTGGTGTTGCGCGGTGGGCGAGAGGTGTTGGGGGGAAGATGCTGGGGTCGGGGCTGAATCTGGTGACCACGGTGATCGGCTTCGGGATGAGTGCCACCTTCATCGTCTTCGTCTGCGCGCGCCTCATCTGCGGCCGCGCCGCGCGGGCCGACGCCGAGGCCGACGCCGCCGAGGGCAGGGTCGCGGCCGCGCGGGCCATGGCGGCTGGCCCCGCGCCGTTCGACTTCGACGTCGAGTTCCGGGCCACGGATCTCGACCGCACGGTAAGATTTCTGTGCTCTACTCCGGTAATAACATCATCTAGCGTTTAGCTGGTTGGCGTGGGATGGCTCTGTGCGCATTGCTGCGTGGTGAATTGTTGATGCTGTGCCGCTTGAATTGCTTTTTAACATGACTCCATAAGCGATGGGTCCAATAGTTCGCAATTTCTACGGGTATGGCAACCAGTTCACGGAAATGACAAATCGCCACGCCTCACACTGATTTAATTTGTTCCAGCAGTGGAAAATCTAAAAAAAAAAACGAATGGTTCCTCCATTTACTTCCAATTATCTGGATACAAATTAGACAACAATTCAAGGCTTCAAGCTTGTTTATGAATGGCTCCTTCATTTGATTTCAGTTATAACCAGGGTTTAATCTTTCGGTTTGGACGTTTCTATCAGAGGGTGCTGATATACTGAAATTGCAGAAATTTCGTTCTGAAATTTTGAAGACATTTTAGTCAAAGTTGAATAAAATAATTCCAAATTCACAAAAAAAAATTCGGCCAAAATAATATCATTGGGGGGGGGGGTCCGATATGATCGAAATTTCGTTCCGGAATTTTGAACCCTGGATATACCTGGATACAAATTAGACAACAATTCAATGCTTCAAACTTGTTTAGTTGTGCATGACGTGCAAATTCTGTTATATAGCAATTGAGCAATAAATGCACATCACACTTTAACTCAGGATTGATGCATACTATTTGCAATGCAAGCTATTCTTTCTAACAGAAAGATAGATGGGCATTGCCTTTTTAAAACCTAACTAAGCTTCAAATGTGGAAAAAATGCTTGCTCCAAATGCGTCTGAAAAATCCTAGTAACAATGAGGTGATAAAATGGAGAAGGAAATTATGTGTCTGAATTGAGCAAGGAGTGATAACTTGGGAACCAAAAGTACTACTAATCCTACTAATAAAAACTATTAACTTGAGTAAACATCGTAATAAAAAAGATTTTGTAGTTATATTAAAAAGAGAGAGAGAAGACATGGTCTTGTTCCAAAATAAATGCAGTTCGTGTTGGCCATATAGTTATGCCAAAGATTTCCTTTGCTAATCAAACCAGCCATAGAAATTTCAAGTTACTTAACATAATGTAAACTTGTTTTTTCTTCTGATGTATGTCTAATGCTTGGTCACAATATAATCGAGTTGTCATAGTGTATTTTTTCTCTTGGTTGTTGTGAGAGTGTCTGAATTACTCTCATCACCAATTTATGTCAATATCACATTATTTTCTATAACTCAATAGAAGATTAGACATCTGCGCTGTCTGTTTCAACTGTGAATATGACATGATAGGTTAATATGTAATATATCACTTCACAAACATGCAAGTTCAAATTCGACTTCTACAAGTTATAACAAAAAGTCAAAAAATAACAAATTTGACTGTGAATATACGTATACTAGTTAGAGTTTGATTTGTTATTTTTGTTACAACTTGTAGAAGTCGAATTTGAACTTGCATGTTTGTGAAGTGATATATTACATATTAACCTATCTTGTGAATTTTTTTGGAATTTTTTCATAATCATTTAGGTGGCATGCAAGAAACGGGTGGACGTCCACCCAAGAGATTAGAATCCATCCTCCATATATAAAGCATCTTTTATATTGCTTACGGACAACCTAGAGGCCTAGGACCAGATTCTTGCCAGTTTTGTGCCCATTGATCACCTTTACAGACATGCTAACTTCCACTTGTTCATGACAATAATATTTTCAGTGAGTAGCCTTTTGGGAAGATAAACTTCTAATCTATTGAGAGTTTTGAATTCTTCATGCAAACTATCGTAGTATTGTATATATATTGATAATATAACAATATTACTGAAAAGTTACACAACAATTACCAGATTCCAAATTCCAAATGTAATGGCACACTAAGGTGCTCCTGTTGTATCTTTTGATGGGCTCCCTTTTGTCCTTATTTACTTGTTGCATCATTCCTAATTAGAAAATGATGCTTGAACTGCTAAAATCAGATATTTGTAATACTAAATGGAAAACCACTGTGCTAATTAGGTATGTGCTTGTGTTCGGAAATTAACTTGGTCATTCCTTTTTTTTTCAATAGATTGAGCATACCCGTAGTGGATTGGAACCTTTTGTTGTTGCTGCAATTCCTACAATGAAGTACAGCTACGAGGCCTTCCAATCAAAAGATGATGCCCAGTAAGTGTACTGTATACTGTAGAGCTACTTACGTGCTTCCATCTTTTGGTCTCCTGTCTATCATGTTTGCCTGTTCTGGATTGGCAGCAAACTTCATGAGGTAGTATCTGCAACTGTCCAGTTACCTGCATCAAACTTTCTTTGCTCTGCTGGAATGCCTGTACAGTTTTTCTTTTCGACAATTGTCAGTGAAATTCACTGAAAAGAATATTCAAGAAGTTTGTTAGTGTGCATAATATGTTAATATTAGATGAACAATTGCAAACAACTCCATTCCAAAAATGATGATCCGATGCTGATAGCCTGAAAAATATTTCATATTTAATATTGGTGATCTCATGTGTTGTGAAGCATGTGGTACAGCTGGCTAAGAAACTGAAATATGTTGGAACAACTCACCAGCCAGACTAGCTCTCTAGTTGTGATTTACAAGCTATATAGCATACTAGTGCTTTTGGGAACAAGAATTGCATGAGCTATCTGTTGTTATTCTTTTATCCCATTTTTGAATGGAGGAAAGGAAAACAAGCAGACCTGATAATTGAACATTGACCCATGCTTGCTAATCTAACATGACTATTGAAGATAGTGAGCAATCAATCAAATAAAACTACTGGTAGCCTAAAAAAAACACCGGTGAAATTGATACAGATAATCATCAGAGTTTTTGTGTGTATGTGTGCTTGTGTTTCATGATGTATCGGATATGCATAACATGAATTATGTGTGGAAAAGAGGGCAGTTGAATAGAATTATATTTTTGATTAAAAACGGTCTCTAGCACTTATTTGGTGAACAGAATAGCACTGGACCTGCATATGCTTCGCTGTCTTTTCTTTTTTATCTTGGATCTGTGTCTTCATGGCAAGAAGTTACTTTCTTGTCCAACAGATATCATTTGTAACCGAGTCTTCCCTGCCAAAAAATGGAATAATCAAGAGAAAATACCATTTTGTGTTAGGATTTATATTACTGGGCTGACTATCATGTCAAAAATAATATTACTGGTTGATGATTATGGTTCCTTATTTGTGCTGCGACATGCTCGGAGAAAGTTACCATCTTGCAGAAATAATGTTATAAGCTATTTGACCTTTTTTTTTTGTTTAACAGGTGCTCCATATGTTTAGGTGAATACAATGAGAAAGAGATTCTGCGCATCATGCCCAAATGCCGTCATAATTTTCATCTTTCCTGTATAGATGTATGGTTACAAAAGCAAACTACTTGTCCGATATGCCGGATCTCATTGAAGGACCTACCCAGTGGAAAACCTGCCGAGTCCCCTGTCCGTAGTCTCCCTCAACTATTCAGCCACCCTGAAAGCTCAGTGAGTCGATCACCTCATTGGATACTTCCTATCCATCGTGATCGTACTGGAGGTAGAGAAAGCAGCCCGGCTTCACAAGAAACAGTAGAGGTGGTCATTGAAATCCAACAAGAAATGCACTGAGGACATGGATGTATAGAGGCGAGATATCGATAGAAGTTGATGAAACTATTTTGTTTTTCGGTTGAGCAACAAAGATATCTTCTATTGCAGAAACGCCGTGCGTTCTTCCAGCAGCAGGGCAGCACGTACACGGCTTTGGCACAGAATTGCAAGGAATTTGTTTACGACAGGACTGGATTTTAGGCATTCTTTGTACATTTGAGGGTGTAGATTAGCGGGTTGCCTTTTGCCCCTCTGTTCATTTTTTATGTGTCCTTGATGTATAGTGTAAAAGGAAGCATTAACAATACTGATCAGATTCGGGGCCGCGAAAATATTTGTAGCAGCGCCGTTGT
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| CDS seq | ATGCTGGGGTCGGGGCTGAATCTGGTGACCACGGTGATCGGCTTCGGGATGAGTGCCACCTTCATCGTCTTCGTCTGCGCGCGCCTCATCTGCGGCCGCGCCGCGCGGGCCGACGCCGAGGCCGACGCCGCCGAGGGCAGGGTCGCGGCCGCGCGGGCCATGGCGGCTGGCCCCGCGCCGTTCGACTTCGACGTCGAGTTCCGGGCCACGGATCTCGACCGCACGATTGAGCATACCCGTAGTGGATTGGAACCTTTTGTTGTTGCTGCAATTCCTACAATGAAGTACAGCTACGAGGCCTTCCAATCAAAAGATGATGCCCAGTGCTCCATATGTTTAGGTGAATACAATGAGAAAGAGATTCTGCGCATCATGCCCAAATGCCGTCATAATTTTCATCTTTCCTGTATAGATGTATGGTTACAAAAGCAAACTACTTGTCCGATATGCCGGATCTCATTGAAGGACCTACCCAGTGGAAAACCTGCCGAGTCCCCTGTCCGTAGTCTCCCTCAACTATTCAGCCACCCTGAAAGCTCAGTGAGTCGATCACCTCATTGGATACTTCCTATCCATCGTGATCGTACTGGAGGTAGAGAAAGCAGCCCGGCTTCACAAGAAACAGTAGAGGTGGTCATTGAAATCCAACAAGAAATGCACTGA
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| Protein seq | MLGSGLNLVTTVIGFGMSATFIVFVCARLICGRAARADAEADAAEGRVAAARAMAAGPAPFDFDVEFRATDLDRTIEHTRSGLEPFVVAAIPTMKYSYEAFQSKDDAQCSICLGEYNEKEILRIMPKCRHNFHLSCIDVWLQKQTTCPICRISLKDLPSGKPAESPVRSLPQLFSHPESSVSRSPHWILPIHRDRTGGRESSPASQETVEVVIEIQQEMH |
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| Function | Putative RING-H2 finger protein ATL36 [UniProtKB/Swiss-Prot:Q9M0R5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g45390 | LOC_Os02g45390.1 | Chr02 | 27602320 | 27606781 | + | MSU_osa1r7 | ||
| CDS seq | ATGCTGGGGTCGGGGCTGAATCTGGTGACCACGGTGATCGGCTTCGGGATGAGTGCCACCTTCATCGTCTTCGTCTGCGCGCGCCTCATCTGCGGCCGCGCCGCGCGGGCCGACGCCGAGGCCGACGCCGCCGAGGGCAGGGTCGCGGCCGCGCGGGCCATGGCGGCTGGCCCCGCGCCGTTCGACTTCGACGTCGAGTTCCGGGCCACGGATCTCGACCGCACGATTGAGCATACCCGTAGTGGATTGGAACCTTTTGTTGTTGCTGCAATTCCTACAATGAAGTACAGCTACGAGGCCTTCCAATCAAAAGATGATGCCCAGTGCTCCATATGTTTAGGTGAATACAATGAGAAAGAGATTCTGCGCATCATGCCCAAATGCCGTCATAATTTTCATCTTTCCTGTATAGATGTATGGTTACAAAAGCAAACTACTTGTCCGATATGCCGGATCTCATTGAAGGACCTACCCAGTGGAAAACCTGCCGAGTCCCCTGTCCGTAGTCTCCCTCAACTATTCAGCCACCCTGAAAGCTCAGTGAGTCGATCACCTCATTGGATACTTCCTATCCATCGTGATCGTACTGGAGGTAGAGAAAGCAGCCCGGCTTCACAAGAAACAGTAGAGGTGGTCATTGAAATCCAACAAGAAATGCACTGA
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| Protein seq | MLGSGLNLVTTVIGFGMSATFIVFVCARLICGRAARADAEADAAEGRVAAARAMAAGPAPFDFDVEFRATDLDRTIEHTRSGLEPFVVAAIPTMKYSYEAFQSKDDAQCSICLGEYNEKEILRIMPKCRHNFHLSCIDVWLQKQTTCPICRISLKDLPSGKPAESPVRSLPQLFSHPESSVSRSPHWILPIHRDRTGGRESSPASQETVEVVIEIQQEMH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.080689 | 0.133543 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0676500 | RBH | 0.118220 | 0.199185 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g48310 | RBH | 1.294018 | 1.151749 | 0.703839 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0676500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0028840 | RBH | 0.0 | 0.0 | 2.597882 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0028920 | RBH | 0.0 | 0.0 | 0.683265 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0028790 | RBH | 0.0 | 4.959711 | 0.526729 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028390 | RBH | 0.0 | 0.174791 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0028500 | RBH | 0.0 | 5.516127 | 3.609654 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0447200 | RBH | 1.0533 | 2.8349495 | 1.4944855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0028310 | RBH | 0.0 | 0.511195 | 0.295080 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0475200 | RBH | 0.6665835 | 1.3570125 | 2.2313025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0028650 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028360 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0028650 | RBH | 0.0 | 5.043327 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0028520 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0028210 | RBH | 0.0 | 3.321672 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G028790 | RBH | 0.0 | 2.130565 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0028570 | RBH | 0.0 | 0.0 | 2.709167 |
