Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsCMeo_02g0019650 OGI:02056010 | 16/16 CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) Chr02:19598573-19603285
Gene Symbol -
DNA seq

CAATCTTATAAGGACAACATGTGAAATGATCAAATCAAGTCCATTGGATTCAAGAATGTACATGCAAGTATACTACGAAGCGGGAAAAAAAAACTACCATGGCTCGAACTAGAACTGAAATCAGAAGCCTGTAAAAACAATGTTAATAACAATTAAACAAGACTGGCCCCTACGTGATCCTAAACACATCATAATCCCTTCTCGACCAACCATCCATCTGGCGTATAACAGCTGGTACACGTGTCAGACTACAGCACTGCTTCGCTGCCTCTCTATGCAACAGTAGTCATCGATGGCCCGCGGCAGCGGCAGGAGGAGGAGGATGAGGATGTTCTTCTGCCTGTCCGCCGGCGGCGGCGGACGGCGCGGGCTGCTCATCGGAGACGACGATCTCCAGCCGGTCGTCTGCGGCTGCCGCCGGTTGGAGCGCGTCGGCGTCCGACGACGAGGACGCGGTGGCGGAGAGCTGCTGCTGCTGCTGCCGGAAGGTTGCACGCGCGGGGGCCGGGGTGGAGGGCCTGGCGGCGGCGGGGGGGCAGTAGAGGGGCGGCGGCAGCATGGCGGCGGGGGAGGGGGGTGGGTGCTTGGCGTTGGCGGCGGCGGCGCGGAGGGAGGCGCGGCAGACGGGGCAGGTGGAGTGCTGCCTGAGCCAGGCGTCGATGCAGGCGACGTGGAAGGCGTGGCCGCAGGAGGGGAGCACGCGCACCACGTCCTTCGCCTCGTACTCCTCCAGGCACACCGGGCACCTGCGCGCGCGCGCCAAGATTACGTCAGTTTTACCCCCCCCCCCCCCCCCAACAGCAAATTAAGCCGACATCAGAAACCGTATTGTCTTGCTTTTTCTATAAAAAAAAGGATATAAATTGTTTTAGAACAATTTAGAGTTTTGTTATTTGCTCACGGCATTCTTAATTCAATTCGGCACTTTGTGCGACAAGGAACATATACCCACCCATAAAAAATATTTAATATATATTGAAGTGAAAAATATGTGCAATGAGTAGTACTTAAAAAATAATCATATTTATCGAGAGAAAGAGGAGTTAAGATAAACGGAACCAAGCGTGGGAAGCTAATTAATTCATTGTATTGATTTCTCATTGGCAATCAATATAAATTCACCAGTATATACAAATATTCATTTGATTAAGATATAAGTAACAATACGACACTATAAAATGCTTCTCTAGAGCACCACATAATTAATGAACTATTATGACGATATATCAGGTTCCTTTTAAGGCCCTTTTTCTGCTGAATGGAATATAAACGATATATGCAAAAAAAAATTGAATGGTTGAATAATTGGTGATACTTATTTAAGAGTATACACGAATTTATTAACTATTATAAAATTTAAAATGGATTTAAAACAATATTTTAAGAATTTCATATGTAGCTCGAGAAGCATGACACTAAATAGAATGCGACGTCCATGGCTCCACCATTAGATAATGAATGTAGTGAAGTTGGTATGAAACTCAAGTGTGAACGTAACTATGCCGTTGATTTTTTTTACTCGCCCGCCCAACATGCGGTGCTTGCAGCTTCGCGAGGCTTCTACTGGAAGCTGCTAGCGTCTTTTGAGTACTGAAGTACGAATCGAACGGTTCATACAGTTTGCTGCCTGCATCTAACGGTGGACAATTTGCAGCTTACGTCGCTAAATTAGGATTCAAGAAAGATCAATTCTTTCACTACTTTAGATTTGCCAAGAGACAACTTCAACCATTATTTTAACAACTTCAACCATTATTTTAAGAACTACATTATGAAAAAGTAGTGTGCACTATCTACTGGTATAAAACAATCTGAATCATTGATCTCGTTTGATTAGAGGGTTTCAGATATATTACTACCACCTCAATAAACAACAATAGTAGAAACATGGAGGGTATTATTATAAAAAGAAAGATGCAAAGGGGTATAATTGTCATTTAGCCGTGATTAAACTTTTTTTCTCCCTTTTTAGCTTTTCCGATAGAATATGAGCAAAGCCATCGCAATGAATGATTATAGAACGATTTAGCCAAGAAAAAATAATACATAAATACTCCCTCCGTTTCACAATGTAAGTCATTCTATCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAACATCAATATGAATGTAGAAAATGGTGGAATAACTTAAATTATGAAACAGAGGAAGTAATAGTTACTCTTAATCATGGTATTAGTAAATTATTAATTTATCTATAATAATACTGGTAGTATAATACTACAGTATTTTAATATATCCTCTAAGAGAGTGAAAACTTTACGGAATACAATTTTACAGGTTGTGTCATATTGCAACAAAGGTAACGTAAGTTCAAAGTAAAATATGTCTATTGCAACTAAGGTAACATACGCTCAAAGTAAGACAACAAAAGTAAAATTATCCAGTTTAAAATAGAAACATTAATTAAAATATGGTTCAAAATATCGATATAAAAGATGGCCCAAAATTTACTTTTATAGAGAAGTGATATGTTCCTAACTTTTAAAGTCAAAACAACTTTTGGTAGGAGTACAATAAAGGGCAACATATAGTACACTAAACAACCCCCTCCCTATTAATATAAGCCATAATTATAGTATTAGTGACCACTTTCGATCTGACTTTGTCTCTCTGGTACGTCAAGCACAAATGCACAATTGACTATTTCTGAAATTGATAGGCCATCATGGCCTTTATTGGTAAGATAAGGGCAGTTCGAACCCAGAGAACCACTAAACTATCTTGCTTCTGTTAACTAATATCCATAACCCATCATATAGTTTCCAGTTTCGAGGTGATCTTCCCCATTTTGCACTTCTACTTCAGTCTAATGGCAAAAAAACAGGTTTCTGTGACTTCGATCTTACAGAACATTATATTTTTTTTCAAGTAAAGCCAAGTCCAGATCATCTTGATTCTTAAGTAAAGCTAGCTAAATCCGCAAAATTCTTATAAATAAAAAGCAAATCCGCGCAACAAGACCGTTGCACTCTAAACTATATTTAAATTAAGAGAACATGTGATTTATACCAGGGCGAAAGCTATCAGCCAATGTACCTATTATCTCTTTATCAATCTATTTTACTCTCTCCGTTCTTAAATAATATTTACCATTTTAGTCTAAAGATTTATCTCATAAAACTTTCTTTTAAGTGGACCCATTAGACATTTTTAATACAACTTCAATATTCTTCTTCTTGTTTAGCCATTGAACCAGCAATGCTCCCTCCTCGTCGTCCTCATTTTCTCTTCGCATTAATGAATAACAAAGTAACATTTTAATCTCTTACTTAATCTACCTTTGACTCGCTAGAACAATCGTCCCTTAGGATGGAGGGAGTATATTGCTAAGAAAAGATAGTGAACCATCACATTTGTTTCGAGATCTTAGAAATTACTAAATTAATATATGAGGAAAACATAAATATTTGTAAAATTTTATCGCATTGAATCTAGATTATAACCTGAAAAATCGATCAATCTATATAGGTTATATACATGTATTTTTATTCATTATCTAAAAATAGTTATATACAATATAATTATATTAATTATATTTATAGAACTACAAATAAGACCCCCACATAAATACAATTTTTTTAAGGAATTAATAAAATTATTTTTCTAAACAATTTTTAATCTAGCTTTCTGTAATTGTCAACGAAATTCAGCAAGTTGTGATCGATCGTAAAGAAAAAGTAATGATTCAGAAAAAAGAAGAGCTCTCTACTGCTAAAAAATAAAAAGAAAGCGGCCAGCTGCCGTAAAAGGAAAAGGGCCACACGAATTTTGTTTCGCCACGCCATCGCTAGATACGCTCGCGCACAAAGCGAATTCGTCTCGCCTGACGTGATGCATTTCTAGCTAGCTACTGTACTAGCTAGTTGTTGTTGGTATTATCCGCGACGAGAAATTAAATTTGGTCGAATAATCGTGGCATGAGCGCGTGAGATTAAAGCCAATTTAAAACCCAACAAAAAGAGGGAAGGATTAATTGGTGGTGCCTTAACTGCGATTCCTCCAGCGCCGCCGCCGCGCGAGGCCGCGAGCCGCCGTCGCCGAACTTGGCCGTTGGGAAGCTCGTCACCACCGCCGGCTCCAGCCCGCGGATCCCGCGCTCCACCTGCGCGCGCGCGCGCCATGCGAACCGATCACAAACACGCTCGTACGTACGTAGCACGAACGATCAACGAGAGGATGGGGTTGCTGCGTACGTACGCTGAAGGCCGGGAAGGCGTCGCCGTGCGCCGCCGCGGCTGCGGCGGCGGATTGGCCCGCCCTGAGGTGGATGCGGGCGCAGAGCAGCCTGACGAAGATGAAGAGCACGAAGAAGGCGCTGACGGAGAAGGCCATCACCGTCGTCACCGTGTTCATGCTCATGCCGCCGCCGCCGCTCGTCGACTTCTCCGCCGGCGAGGACATTCGCCCTCCAGCATCTCACTCCGGGCTCCACCACCACCACCACCCAATCCGCGAGCTCAGCTAGCTCTGGATTGGATGGTATCCTCCTCCTCCTCCTCCTCTCCTCGCCGTCGGAGAATCAACCAATTAACCAATCAAGCAATCAATCAAATCAATCGACCAATCCACAGCTCCCCGCCGTAATAAAGAGGAAGAGGATGAGAAGGGCGGAGCGCATAGCGCATAGCGGCAACAGCGAGTGTGTACTCGCCTCGCCT

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CDS seq

ATGTCCTCGCCGGCGGAGAAGTCGACGAGCGGCGGCGGCGGCATGAGCATGAACACGGTGACGACGGTGATGGCCTTCTCCGTCAGCGCCTTCTTCGTGCTCTTCATCTTCGTCAGGCTGCTCTGCGCCCGCATCCACCTCAGGGCGGGCCAATCCGCCGCCGCAGCCGCGGCGGCGCACGGCGACGCCTTCCCGGCCTTCAGCGTGGAGCGCGGGATCCGCGGGCTGGAGCCGGCGGTGGTGACGAGCTTCCCAACGGCCAAGTTCGGCGACGGCGGCTCGCGGCCTCGCGCGGCGGCGGCGCTGGAGGAATCGCAGTGCCCGGTGTGCCTGGAGGAGTACGAGGCGAAGGACGTGGTGCGCGTGCTCCCCTCCTGCGGCCACGCCTTCCACGTCGCCTGCATCGACGCCTGGCTCAGGCAGCACTCCACCTGCCCCGTCTGCCGCGCCTCCCTCCGCGCCGCCGCCGCCAACGCCAAGCACCCACCCCCCTCCCCCGCCGCCATGCTGCCGCCGCCCCTCTACTGCCCCCCCGCCGCCGCCAGGCCCTCCACCCCGGCCCCCGCGCGTGCAACCTTCCGGCAGCAGCAGCAGCAGCTCTCCGCCACCGCGTCCTCGTCGTCGGACGCCGACGCGCTCCAACCGGCGGCAGCCGCAGACGACCGGCTGGAGATCGTCGTCTCCGATGAGCAGCCCGCGCCGTCCGCCGCCGCCGGCGGACAGGCAGAAGAACATCCTCATCCTCCTCCTCCTGCCGCTGCCGCGGGCCATCGATGA

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Protein seq

MSSPAEKSTSGGGGMSMNTVTTVMAFSVSAFFVLFIFVRLLCARIHLRAGQSAAAAAAAHGDAFPAFSVERGIRGLEPAVVTSFPTAKFGDGGSRPRAAAALEESQCPVCLEEYEAKDVVRVLPSCGHAFHVACIDAWLRQHSTCPVCRASLRAAAANAKHPPPSPAAMLPPPLYCPPAAARPSTPAPARATFRQQQQQLSATASSSSDADALQPAAAADDRLEIVVSDEQPAPSAAAGGQAEEHPHPPPPAAAAGHR

Function RING-H2 finger protein ATL32 [UniProtKB/Swiss-Prot:Q8W571]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsCMeo_02g0019650 OsCMeo_02g0019650.01 Chr02 19598859 19603028 - NAM
CDS seq

ATGTCCTCGCCGGCGGAGAAGTCGACGAGCGGCGGCGGCGGCATGAGCATGAACACGGTGACGACGGTGATGGCCTTCTCCGTCAGCGCCTTCTTCGTGCTCTTCATCTTCGTCAGGCTGCTCTGCGCCCGCATCCACCTCAGGGCGGGCCAATCCGCCGCCGCAGCCGCGGCGGCGCACGGCGACGCCTTCCCGGCCTTCAGCGTGGAGCGCGGGATCCGCGGGCTGGAGCCGGCGGTGGTGACGAGCTTCCCAACGGCCAAGTTCGGCGACGGCGGCTCGCGGCCTCGCGCGGCGGCGGCGCTGGAGGAATCGCAGTGCCCGGTGTGCCTGGAGGAGTACGAGGCGAAGGACGTGGTGCGCGTGCTCCCCTCCTGCGGCCACGCCTTCCACGTCGCCTGCATCGACGCCTGGCTCAGGCAGCACTCCACCTGCCCCGTCTGCCGCGCCTCCCTCCGCGCCGCCGCCGCCAACGCCAAGCACCCACCCCCCTCCCCCGCCGCCATGCTGCCGCCGCCCCTCTACTGCCCCCCCGCCGCCGCCAGGCCCTCCACCCCGGCCCCCGCGCGTGCAACCTTCCGGCAGCAGCAGCAGCAGCTCTCCGCCACCGCGTCCTCGTCGTCGGACGCCGACGCGCTCCAACCGGCGGCAGCCGCAGACGACCGGCTGGAGATCGTCGTCTCCGATGAGCAGCCCGCGCCGTCCGCCGCCGCCGGCGGACAGGCAGAAGAACATCCTCATCCTCCTCCTCCTGCCGCTGCCGCGGGCCATCGATGA

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Protein seq

MSSPAEKSTSGGGGMSMNTVTTVMAFSVSAFFVLFIFVRLLCARIHLRAGQSAAAAAAAHGDAFPAFSVERGIRGLEPAVVTSFPTAKFGDGGSRPRAAAALEESQCPVCLEEYEAKDVVRVLPSCGHAFHVACIDAWLRQHSTCPVCRASLRAAAANAKHPPPSPAAMLPPPLYCPPAAARPSTPAPARATFRQQQQQLSATASSSSDADALQPAAAADDRLEIVVSDEQPAPSAAAGGQAEEHPHPPPPAAAAGHR

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Gene Transcript Chromosome Start End Strand Source
OsCMeo_02g0019650 OsCMeo_02g0019650.02 Chr02 19598573 19603285 - IsoSeq
CDS seq

ATGCTGCCGCCGCCCCTCTACTGCCCCCCCGCCGCCGCCAGGCCCTCCACCCCGGCCCCCGCGCGTGCAACCTTCCGGCAGCAGCAGCAGCAGCTCTCCGCCACCGCGTCCTCGTCGTCGGACGCCGACGCGCTCCAACCGGCGGCAGCCGCAGACGACCGGCTGGAGATCGTCGTCTCCGATGAGCAGCCCGCGCCGTCCGCCGCCGCCGGCGGACAGGCAGAAGAACATCCTCATCCTCCTCCTCCTGCCGCTGCCGCGGGCCAT

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Protein seq

MLPPPLYCPPAAARPSTPAPARATFRQQQQQLSATASSSSDADALQPAAAADDRLEIVVSDEQPAPSAAAGGQAEEHPHPPPPAAAAGH

OsCMeo_02g0019650.02OsCMeo_02g0019650.01AS19599000 bp19600000 bp19601000 bp19602000 bp19603000 bp19604000 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A5 Chr02 19602729 19602825 - OsCMeo_02g0019650.02 OsCMeo_02g0019650.01,OsCMeo_02g0019650.02 All

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_02g0528000 RBH 0.647168 0.000000 0.000000
Nipponbare | IRGSP 1.0 | MSU LOC_Os02g45390 SBH 0.080689 0.133543 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os02g0528000 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0019600 RBH 0.272954 0.0 0.416993
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_02g0019710 RBH 0.0 0.000000 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0013600 SBH 1.661325 8.452540 0.652955
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0019430 RBH 0.000000 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0019390 RBH 0.000000 5.119490 1.257327
Minghui 63 | MH63RS3 | HZAU OsMH63_02G0320500 RBH 2.2611235 5.8503205 9.1613405
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_02g0019100 RBH 0.096408 0.000000 0.154879
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_02G0340600 RBH 6.0413795 8.9839575 0.06729
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0019640 RBH 0.000000 0.204399 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_02g0019370 RBH 0.277155 5.493808 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_02g0019780 RBH 2.580898 50.420223 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_02g0019500 RBH 0.000000 0.659367 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_02g0019290 RBH 0.218514 3.805357 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G019720 RBH 0.000000 0.000000 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_02g0019440 RBH 0.0 2.212818 0.000000
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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