Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0001180 | OGI:01002250 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:842717-845909 | ||||||||
| Gene Symbol | RLCK9, OsRLCK9 | ||||||||||
| DNA seq | atgagtaaattcctcgccatctctcttctgctcactcttctcagccattgcgcctacagctacagcagggccacagcttccgcctggcgtgaccaggacttcttcggatattgtagagtgtcccagtgcagcgacggtggaccagagatccggttccctcaccgcctgcaatccagcaatacatcatcagcatgcggcgcttcatgcgcgaggctagcatgctctggtccagacaccatcctacaccacccatttctgggcccttgcaacgtgacctccatagattacaggaaagctaccatgaagatcatacctctccggtctccgtgccctcttcagaagctcatcttcaacacgctaccgcctaatgacaatcttagctgtgaattatacagcaatgatcctgcaaaaatagtacaatgttcaaaaaagttcacaccaagtggtacttctccagtcgatggcgaggctttcatgaccaccgccgattatatagccggcccaatctcctgccttggtgacacaaagcacttctcatatttggtgtttgctcggctatacatgtatgtgcttcccttggactgcaggatcgtctcaaaaggctccattccaatacctcgcccactcaacatctatggtccaaccttcaaggaaagagcagaagcaatcatcaacttagctgagattactgtcagttggtggcccgatgaagtaacctttaactacaccaagtgcgatgaagtaacctttaactgcaccaagtgcgaacgtcaaaagcaacgctgtgcgttcagctcacaaaggaatcaaacattctgcatgagccacaagcatcacggtaccatcgctaactgctcaaaatccaacattatcgtaccacactacttttatttcctgaactacttttctattttcgaactagctactagtatgatttagctatacagtaatagtgtactgctctctatatttttaaactacatgagataggctgcaaaattttttttgcaggctagtagcatactgctagaaaccatttgaggagctagctagctagcttcatcaaatgttaagtcataatttcttccgcaattcccataaaaatgtcttatatactgaaatgaagatggaattatatctgttcaactagcaccaataagacgatataatattatgattgtaaaagtctggaacttctcagagatattttcaggcacatagaacactagaggactgctacaaaaaggactggaaaacaaaatacttacttaaacactgaaatagaattggaaaatccaaaagttgtttagaataactagcactagtgttaaacgtttccatgacaatacagtaatataatgttgttttACacaaaaagactgcacacatgataatgacctaagtcttttctgccaattaccagagttagtatgcagatactgctaactaagatactccctctgttttttaatagatggcgccattgacttttaaacatatatttgaccattcatcttattaaaaaattgtatgcaaacatataagatattaatcatgcttaaaatattttgagtgataaaacaacccatgacaaaataaattataattacgtaattactttggataagacgaacggtcaaatgtgtgacaaaaagtcaacagcgtcatctattaataaatggaggtagtataaggaaacattcattattgcaagtatatattcatataatcacagtgcagtagttccccaccagggccatgttctgttcacactgtataactatgttgaatcatactgatttctcaagaagtaactgtccagtatctgtaaaaccatcaatcagatctcattatcttctttgatacttgcaggtcagcgtgttaaagtcatttcaggtactattgtaattgaaatctccctttttactcaaaagagaaaagaaacaatgttcagtacacatagattcttatcgctggctgttatgactcagcatttttctgctacaaatacactaccttctcttatagtacacattaggcaatcagaattcgttgatcacttaggccatagctttctatcctaatgcaatgtgctgatctcccatgctctgtttattcagttacatcatctgtagccgcatttgttgttctttcattcatcgtggccactgcgctctatctttcactaaagtcaaggtatgacaaagaggtacatttgaaggttgaaatgttcctcaggacatatggcacatctaaacccacaaggtacagtttctctgatattaagaagatagcaagacgcttcaaggaacaaataggtcagggtggatttggaagtgtatacaaaggagaactaccaaatggagtgcccgtggcggttaagatgctagaacactctacaggaaagggagaagaattcatcaatgaagtagcaacaattggacaaattcatcatacgaacgttgtgcatcttctaggcttctgctctgaaggaacaagacgcgttcttatttatgaattcatgcctaatgagtcattggagaagtatatattcttgtgtggtcctaatacttctcaagaactcctggcaccaaataagatgctagatattgctttaggtattgcccgaggaatggagtacctgcatcaaggatgcaaccagcgcatcctccattttgatatcaagcctcataatatattgctggactataacttcaatccgaagatttcagactttggtcttgcaaagctgtgtgctagggaccaaagcattgttaccttgaccaaagcaagaggcacaatgggctacattgcaccagagctatattctaggaactttggggagatatcttacaagtcagatgtatatagttttggcatgcttatgttagaaatggttagtggaaggaggaactcagacccaagtattgagaaccagaatgaggtctactttctggagtggatctatgataaagtaattactgggcaggactttgtacttagtggggaaatgacagaagaagatagactgaaggttagacagatggccctcgtggcactttggtgcattcagtggaacccaagaaaccgtccctcgatgacgaaggttgtaaacatgctaacaggaaggttgcagaatatacaggtgccccctaagccatttgtttcatatgaaagccatgctgtgccataa
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| CDS seq | atgagtaaattcctcgccatctctcttctgctcactcttctcagccattgcgcctacagctacagcagggccacagcttccgcctggcgtgaccaggacttcttcggatattgtagagtgtcccagtgcagcgacggtggaccagagatccggttccctcaccgcctgcaatccagcaatacatcatcagcatgcggcgcttcatgcgcgaggctagcatgctctggtccagacaccatcctacaccacccatttctgggcccttgcaacgtgacctccatagattacaggaaagctaccatgaagatcatacctctccggtctccgtgccctcttcagaagctcatcttcaacacgctaccgcctaatgacaatcttagctgtgaattatacagcaatgatcctgcaaaaatagtacaatgttcaaaaaagttcacaccaagtggtacttctccagtcgatggcgaggctttcatgaccaccgccgattatatagccggcccaatctcctgccttggtgacacaaagcacttctcatatttggtgtttgctcggctatacatgtatgtgcttcccttggactgcaggatcgtctcaaaaggctccattccaatacctcgcccactcaacatctatggtccaaccttcaaggaaagagcagaagcaatcatcaacttagctgagattactgtcagttggtggcccgatgaagtaacctttaactacaccaagtgcgatgaagtaacctttaactgcaccaagtgcgaacgtcaaaagcaacgctgtcagcgtgttaaagtcatttcagttacatcatctgtagccgcatttgttgttctttcattcatcgtggccactgcgctctatctttcactaaagtcaaggtatgacaaagaggtacatttgaaggttgaaatgttcctcaggacatatggcacatctaaacccacaaggtacagtttctctgatattaagaagatagcaagacgcttcaaggaacaaataggtcagggtggatttggaagtgtatacaaaggagaactaccaaatggagtgcccgtggcggttaagatgctagaacactctacaggaaagggagaagaattcatcaatgaagtagcaacaattggacaaattcatcatacgaacgttgtgcatcttctaggcttctgctctgaaggaacaagacgcgttcttatttatgaattcatgcctaatgagtcattggagaagtatatattcttgtgtggtcctaatacttctcaagaactcctggcaccaaataagatgctagatattgctttaggtattgcccgaggaatggagtacctgcatcaaggatgcaaccagcgcatcctccattttgatatcaagcctcataatatattgctggactataacttcaatccgaagatttcagactttggtcttgcaaagctgtgtgctagggaccaaagcattgttaccttgaccaaagcaagaggcacaatgggctacattgcaccagagctatattctaggaactttggggagatatcttacaagtcagatgtatatagttttggcatgcttatgttagaaatggttagtggaaggaggaactcagacccaagtattgagaaccagaatgaggtctactttctggagtggatctatgataaagtaattactgggcaggactttgtacttagtggggaaatgacagaagaagatagactgaaggttagacagatggccctcgtggcactttggtgcattcagtggaacccaagaaaccgtccctcgatgacgaaggttgtaaacatgctaacaggaaggttgcagaatatacaggtgccccctaagccatttgtttcatatgaaagccatgctgtgccataa
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| Protein seq | MSKFLAISLLLTLLSHCAYSYSRATASAWRDQDFFGYCRVSQCSDGGPEIRFPHRLQSSNTSSACGASCARLACSGPDTILHHPFLGPCNVTSIDYRKATMKIIPLRSPCPLQKLIFNTLPPNDNLSCELYSNDPAKIVQCSKKFTPSGTSPVDGEAFMTTADYIAGPISCLGDTKHFSYLVFARLYMYVLPLDCRIVSKGSIPIPRPLNIYGPTFKERAEAIINLAEITVSWWPDEVTFNYTKCDEVTFNCTKCERQKQRCQRVKVISVTSSVAAFVVLSFIVATALYLSLKSRYDKEVHLKVEMFLRTYGTSKPTRYSFSDIKKIARRFKEQIGQGGFGSVYKGELPNGVPVAVKMLEHSTGKGEEFINEVATIGQIHHTNVVHLLGFCSEGTRRVLIYEFMPNESLEKYIFLCGPNTSQELLAPNKMLDIALGIARGMEYLHQGCNQRILHFDIKPHNILLDYNFNPKISDFGLAKLCARDQSIVTLTKARGTMGYIAPELYSRNFGEISYKSDVYSFGMLMLEMVSGRRNSDPSIENQNEVYFLEWIYDKVITGQDFVLSGEMTEEDRLKVRQMALVALWCIQWNPRNRPSMTKVVNMLTGRLQNIQVPPKPFVSYESHAVP |
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| Function | Rust resistance kinase Lr10 [UniProtKB/Swiss-Prot:P93604] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0001180 | OsGoSa_01g0001180.01 | Chr01 | 842717 | 845909 | + | NAM | ||
| CDS seq | atgagtaaattcctcgccatctctcttctgctcactcttctcagccattgcgcctacagctacagcagggccacagcttccgcctggcgtgaccaggacttcttcggatattgtagagtgtcccagtgcagcgacggtggaccagagatccggttccctcaccgcctgcaatccagcaatacatcatcagcatgcggcgcttcatgcgcgaggctagcatgctctggtccagacaccatcctacaccacccatttctgggcccttgcaacgtgacctccatagattacaggaaagctaccatgaagatcatacctctccggtctccgtgccctcttcagaagctcatcttcaacacgctaccgcctaatgacaatcttagctgtgaattatacagcaatgatcctgcaaaaatagtacaatgttcaaaaaagttcacaccaagtggtacttctccagtcgatggcgaggctttcatgaccaccgccgattatatagccggcccaatctcctgccttggtgacacaaagcacttctcatatttggtgtttgctcggctatacatgtatgtgcttcccttggactgcaggatcgtctcaaaaggctccattccaatacctcgcccactcaacatctatggtccaaccttcaaggaaagagcagaagcaatcatcaacttagctgagattactgtcagttggtggcccgatgaagtaacctttaactacaccaagtgcgatgaagtaacctttaactgcaccaagtgcgaacgtcaaaagcaacgctgtcagcgtgttaaagtcatttcagttacatcatctgtagccgcatttgttgttctttcattcatcgtggccactgcgctctatctttcactaaagtcaaggtatgacaaagaggtacatttgaaggttgaaatgttcctcaggacatatggcacatctaaacccacaaggtacagtttctctgatattaagaagatagcaagacgcttcaaggaacaaataggtcagggtggatttggaagtgtatacaaaggagaactaccaaatggagtgcccgtggcggttaagatgctagaacactctacaggaaagggagaagaattcatcaatgaagtagcaacaattggacaaattcatcatacgaacgttgtgcatcttctaggcttctgctctgaaggaacaagacgcgttcttatttatgaattcatgcctaatgagtcattggagaagtatatattcttgtgtggtcctaatacttctcaagaactcctggcaccaaataagatgctagatattgctttaggtattgcccgaggaatggagtacctgcatcaaggatgcaaccagcgcatcctccattttgatatcaagcctcataatatattgctggactataacttcaatccgaagatttcagactttggtcttgcaaagctgtgtgctagggaccaaagcattgttaccttgaccaaagcaagaggcacaatgggctacattgcaccagagctatattctaggaactttggggagatatcttacaagtcagatgtatatagttttggcatgcttatgttagaaatggttagtggaaggaggaactcagacccaagtattgagaaccagaatgaggtctactttctggagtggatctatgataaagtaattactgggcaggactttgtacttagtggggaaatgacagaagaagatagactgaaggttagacagatggccctcgtggcactttggtgcattcagtggaacccaagaaaccgtccctcgatgacgaaggttgtaaacatgctaacaggaaggttgcagaatatacaggtgccccctaagccatttgtttcatatgaaagccatgctgtgccataa
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| Protein seq | MSKFLAISLLLTLLSHCAYSYSRATASAWRDQDFFGYCRVSQCSDGGPEIRFPHRLQSSNTSSACGASCARLACSGPDTILHHPFLGPCNVTSIDYRKATMKIIPLRSPCPLQKLIFNTLPPNDNLSCELYSNDPAKIVQCSKKFTPSGTSPVDGEAFMTTADYIAGPISCLGDTKHFSYLVFARLYMYVLPLDCRIVSKGSIPIPRPLNIYGPTFKERAEAIINLAEITVSWWPDEVTFNYTKCDEVTFNCTKCERQKQRCQRVKVISVTSSVAAFVVLSFIVATALYLSLKSRYDKEVHLKVEMFLRTYGTSKPTRYSFSDIKKIARRFKEQIGQGGFGSVYKGELPNGVPVAVKMLEHSTGKGEEFINEVATIGQIHHTNVVHLLGFCSEGTRRVLIYEFMPNESLEKYIFLCGPNTSQELLAPNKMLDIALGIARGMEYLHQGCNQRILHFDIKPHNILLDYNFNPKISDFGLAKLCARDQSIVTLTKARGTMGYIAPELYSRNFGEISYKSDVYSFGMLMLEMVSGRRNSDPSIENQNEVYFLEWIYDKVITGQDFVLSGEMTEEDRLKVRQMALVALWCIQWNPRNRPSMTKVVNMLTGRLQNIQVPPKPFVSYESHAVP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 3.269714 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0114900 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g02460 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0114900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001330 | SBH | 0.173494 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001080 | RBH | 0.069754 | 0.307502 | 0.332710 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001240 | SBH | 0.214158 | 1.921973 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001230 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001080 | SBH | 0.185952 | 2.071903 | 1.005281 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0013800 | RBH | 1.126013 | 2.7424635 | 3.4048895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001150 | RBH | 0.105398 | 0.0 | 0.256867 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0015700 | RBH | 1.1551705 | 1.3876635 | 4.9051195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001130 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001390 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001150 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001290 | SBH | 1.755259 | 0.526992 | 0.360528 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001180 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001390 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0000980 | RBH | 0.068539 | 1.712051 | 0.473257 |
